NO22G00990.1, NO22G00990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00990.1
Unique NameNO22G00990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length765
Alignment locationchr22:313014..313778 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:313014..313778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00990.1 vs.
Match: EWM21446.1 (WD40-repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 3.400e-29
Identity = 82/157 (52.23%), Postives = 101/157 (64.33%), Query Frame = 0 
Query:  101 VQEEEEEWEDEEEAGKE-------GYQYHGPRHRYLAPILSARPLHGVAMGGVTSVKLSATGSMVLLGYGGVRV---SREVGREGEREGYHVVAEVYETGRMVRVRSLRSGGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRG 248
            V+E + +W+ +E   +E       GY+Y G R  YLAPIL+ARPL GV++G +TSVKLS +GS+V+LGYGG R    SR  G      G H + EVYET RM RVRS+RSG           E+EDVNIARFHP   HGFVYGTKQG +CV+   RG
Sbjct:  455 VEETDRKWDRKEAREREAEAVSTVGYRYQGQRQGYLAPILAARPLRGVSLGEITSVKLSPSGSLVMLGYGGARAVPGSRGAG------GGHTMVEVYETERMGRVRSVRSG-----------EDEDVNIARFHPIPAHGFVYGTKQGGLCVFATPRG 594
The following BLAST results are available for this feature:
BLAST of NO22G00990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21446.13.400e-2952.23WD40-repeat-containing protein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00990NO22G00990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00990.1NO22G00990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00990.1.cds1NO22G00990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00990.1 ID=NO22G00990.1|Name=NO22G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp
ATGTGTGGGCAGGGGAGAAGAAAACAACAACCAGATCAGCTGCAGCAGCA
ACAGCAGCAGCAGCCAGAAGAATTGAAAGTGGAGGGGGAAGCAGCAGCAG
CAACAACAACAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGTCCACACCG
AGCTGGTACAACGACGTGCCCGCTGCCACAGGCATGGGTGGTGAGGAGAG
CGATGGTGGGGGAATTGCGGCAGACCCAAAGAACAAGAAAGAAGACCAGA
AAATGGACGGGAAGCAGCAGGAAGAGGACGGAGAGAAGAAAGGAAAGGAG
GTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAGGAGGAGGCGGGAAAGGA
AGGGTATCAATATCACGGCCCTCGCCATAGATACTTGGCTCCTATTCTAT
CGGCGCGACCATTACATGGTGTAGCAATGGGAGGAGTGACTTCGGTCAAG
CTCTCGGCGACTGGCTCCATGGTGTTGCTAGGCTATGGGGGGGTAAGGGT
CTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGAGGGATACCATGTTGTGG
CGGAAGTGTATGAGACGGGGAGGATGGTAAGGGTGCGATCGTTGAGGAGT
GGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTAGAAGAGGAGGAAGATGT
GAATATCGCGAGGTTCCATCCAAGCGCGGGCCATGGGTTTGTGTACGGGA
CGAAGCAAGGGAGAATCTGTGTTTATGGGCCAAAGAGGGGCCCGTTCGGT
GTGGAGCGGGGGTAG
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protein sequence of NO22G00990.1

>NO22G00990.1-protein ID=NO22G00990.1-protein|Name=NO22G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MCGQGRRKQQPDQLQQQQQQQPEELKVEGEAAAATTTAAAAAAAAAASTP
SWYNDVPAATGMGGEESDGGGIAADPKNKKEDQKMDGKQQEEDGEKKGKE
VQEEEEEWEDEEEAGKEGYQYHGPRHRYLAPILSARPLHGVAMGGVTSVK
LSATGSMVLLGYGGVRVSREVGREGEREGYHVVAEVYETGRMVRVRSLRS
GGGEEGRERRVEEEEDVNIARFHPSAGHGFVYGTKQGRICVYGPKRGPFG
VERG*
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mRNA from alignment at chr22:313014..313778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00990.1 ID=NO22G00990.1|Name=NO22G00990.1|organism=Nannochloropsis oceanica|type=mRNA|length=765bp|location=Sequence derived from alignment at chr22:313014..313778- (Nannochloropsis oceanica)
ATGTGTGGGCAGGGGAGAAGAAAACAACAACCAGATCAGCTGCAGCAGCA
ACAGCAGCAGCAGCCAGAAGAATTGAAAGTGGAGGGGGAAGCAGCAGCAG
CAACAACAACAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGTCCACACCG
AGCTGGTACAACGACGTGCCCGCTGCCACAGGCATGGGTGGTGAGGAGAG
CGATGGTGGGGGAATTGCGGCAGACCCAAAGAACAAGAAAGAAGACCAGA
AAATGGACGGGAAGCAGCAGGAAGAGGACGGAGAGAAGAAAGGAAAGGAG
GTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAGGAGGAGGCGGGAAAGGA
AGGGTATCAATATCACGGCCCTCGCCATAGATACTTGGCTCCTATTCTAT
CGGCGCGACCATTACATGGTGTAGCAATGGGAGGAGTGACTTCGGTCAAG
CTCTCGGCGACTGGCTCCATGGTGTTGCTAGGCTATGGGGGGGTAAGGGT
CTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGAGGGATACCATGTTGTGG
CGGAAGTGTATGAGACGGGGAGGATGGTAAGGGTGCGATCGTTGAGGAGT
GGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTAGAAGAGGAGGAAGATGT
GAATATCGCGAGGTTCCATCCAAGCGCGGGCCATGGGTTTGTGTACGGGA
CGAAGCAAGGGAGAATCTGTGTTTATGGGCCAAAGAGGGGCCCGTTCGGT
GTGGAGCGGGGGTAG
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Coding sequence (CDS) from alignment at chr22:313014..313778-

>NO22G00990.1 ID=NO22G00990.1|Name=NO22G00990.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr22:313014..313778- (Nannochloropsis oceanica)
ATGTGTGGGCAGGGGAGAAGAAAACAACAACCAGATCAGCTGCAGCAGCA
ACAGCAGCAGCAGCCAGAAGAATTGAAAGTGGAGGGGGAAGCAGCAGCAG
CAACAACAACAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGTCCACACCG
AGCTGGTACAACGACGTGCCCGCTGCCACAGGCATGGGTGGTGAGGAGAG
CGATGGTGGGGGAATTGCGGCAGACCCAAAGAACAAGAAAGAAGACCAGA
AAATGGACGGGAAGCAGCAGGAAGAGGACGGAGAGAAGAAAGGAAAGGAG
GTGCAGGAGGAAGAGGAGGAGTGGGAGGACGAGGAGGAGGCGGGAAAGGA
AGGGTATCAATATCACGGCCCTCGCCATAGATACTTGGCTCCTATTCTAT
CGGCGCGACCATTACATGGTGTAGCAATGGGAGGAGTGACTTCGGTCAAG
CTCTCGGCGACTGGCTCCATGGTGTTGCTAGGCTATGGGGGGGTAAGGGT
CTCCAGGGAAGTAGGGAGGGAGGGAGAGCGGGAGGGATACCATGTTGTGG
CGGAAGTGTATGAGACGGGGAGGATGGTAAGGGTGCGATCGTTGAGGAGT
GGGGGTGGGGAGGAAGGGAGGGAGAGAAGGGTAGAAGAGGAGGAAGATGT
GAATATCGCGAGGTTCCATCCAAGCGCGGGCCATGGGTTTGTGTACGGGA
CGAAGCAAGGGAGAATCTGTGTTTATGGGCCAAAGAGGGGCCCGTTCGGT
GTGGAGCGGGGGTAG
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Synonyms
Publications