NO22G00940, NO22G00940 (gene) Nannochloropsis oceanica

Overview
NameNO22G00940
Unique NameNO22G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr22:299308..300186 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:299308..300186 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO22G00940 vs. NCBI_GenBank
Match: EWM21452.1 (hypothetical protein Naga_100019g13 [Nannochloropsis gaditana])

HSP 1 Score: 77.4 bits (189), Expect = 8.100e-11
Identity = 123/291 (42.27%), Postives = 143/291 (49.14%), Query Frame = 0 
Query:    9 PAPADTSKRGRKLSIISGLTLLVMVAVALGAYIHLTRHDARSLFHGHRKSPAIR-----ATSTVSAQLRRHLAWGDEEDMEDVLAVGDVGEEDGEDMEGPGVPE--DGSAXXXXXXXXXXXXXDELDGDEELAAEEDGNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGTMTASKKGKXXXXXXVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMSNAGSLNQPLDGTKDPLIPTLDTRDNRRFADEVVLPDGHTVSIDVPSP 293
            P+ +  S++GR  +I   LTL+V+VA A G Y H +    R++      + A        T T+S +LRRHLAWG   D+E+   + D+   D  D E PGVPE      XXXXXXXXXXX  D   GDE                                    XXXXXXXXXXXXXXXXXX G     KKGK           XXXXXXXXX                          R+S  G  + P DG KDPL PTLDTRD RR+ADEVVLPDGHTV IDVPSP
Sbjct:    8 PSASLPSRKGRNWTIGVSLTLIVLVAAATGTYFHFSSQKLRNVSGRDVAAAATTLEEPILTRTIS-RLRRHLAWG-AADVEEDNVIEDI--HDTLD-EAPGVPEXXXXXXXXXXXXXXXXXNLDXXLGDE-----------------------------------AXXXXXXXXXXXXXXXXXXXGPKRPKKKGK----------AXXXXXXXXXPVGKKGRGRTDDSPVVINARPGGGASRVSRGGGRSSPEDGKKDPLTPTLDTRDTRRYADEVVLPDGHTVHIDVPSP 248
The following BLAST results are available for this feature:
BLAST of NO22G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21452.18.100e-1142.27hypothetical protein Naga_100019g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR078ngnoR078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00940.1NO22G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631642gene_7093Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100019g13gene8978Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00940.1NO22G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00940 ID=NO22G00940|Name=NO22G00940|organism=Nannochloropsis oceanica|type=gene|length=879bp
ATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCTCAAAACG
AGGCAGGAAACTTAGCATTATTAGTGGCCTGACCTTGCTCGTGATGGTGG
CCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGCCCGCTCC
CTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTAGCACGGT
AAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAGGACATGG
AGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGAAGACATG
GAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGAAGAAGAA
GAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAGGAGCTGG
CTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGTCGATGAG
GAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACGAGGATGC
GGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGATGATATGG
CAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAAGAGAAAA
TCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGAGGCGCCCAA
GAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAGAAGGGTG
GGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGGAAGTCTG
AACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACACTGGACAC
GCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGACGGTCACA
CAGTCAGCATTGATGTTCCTAGTCCTTAA
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protein sequence of NO22G00940.1

>NO22G00940.1-protein ID=NO22G00940.1-protein|Name=NO22G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MATHAAAAPAPADTSKRGRKLSIISGLTLLVMVAVALGAYIHLTRHDARS
LFHGHRKSPAIRATSTVSAQLRRHLAWGDEEDMEDVLAVGDVGEEDGEDM
EGPGVPEDGSATSTKKKKKKFSFDDELDGDEELAAEEDGNDDEEDGEVDE
EDGEDEGDDGGEDDEDAGDEEGDGDDEEEPDDMAEGGTMTASKKGKKKRK
SRVGDASGANGEKEAPKKKKKNKKKTATKKKKGGSSRGGRSSRMSNAGSL
NQPLDGTKDPLIPTLDTRDNRRFADEVVLPDGHTVSIDVPSP*
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Synonyms
Publications