NO22G00940.1, NO22G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00940.1
Unique NameNO22G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length879
Alignment locationchr22:299308..300186 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:299308..300186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00940.1 vs.
Match: EWM21452.1 (hypothetical protein Naga_100019g13 [Nannochloropsis gaditana])

HSP 1 Score: 118.2 bits (295), Expect = 4.200e-23
Identity = 117/289 (40.48%), Postives = 149/289 (51.56%), Query Frame = 0 
Query:    9 PAPADTSKRGRKLSIISGLTLLVMVAVALGAYIHLTRHDARSLFHGHRKSPAIRA-----TSTVSAQLRRHLAWGDEEDMEDVLAVGDVGEEDGEDMEGPGVPEDGSATSTKKKKKKFSFDDELDGDEELAAEEDGNDDEEDGEVDEEDGEDEGDDGGEDDEDAGDEEGDGDDEEEPDDMAEGGTMTASKKGKKKRKSRVGDASGANGEKEAPKKKKKNKKKTATKKKKGGSSRGGRSSRMSNAGSLNQPLDGTKDPLIPTLDTRDNRRFADEVVLPDGHTVSIDVPSP 293
            P+ +  S++GR  +I   LTL+V+VA A G Y H +    R++      + A        T T+S +LRRHLAWG   D+E+   + D+   D  D E PGVPED   T  KKKKKKFSFDD LD                         +D GD+    D+D GD++  GDD       A+ G     KKGK         A+   G K+ P   KK + +T        +  GG +SR+S  G  + P DG KDPL PTLDTRD RR+ADEVVLPDGHTV IDVPSP
Sbjct:    8 PSASLPSRKGRNWTIGVSLTLIVLVAAATGTYFHFSSQKLRNVSGRDVAAAATTLEEPILTRTIS-RLRRHLAWG-AADVEEDNVIEDI--HDTLD-EAPGVPEDDD-TPKKKKKKKFSFDDNLD-------------------------DDLGDEADMSDDDMGDDDVPGDD-------ADVGPKRPKKKGK---------ATTKKGSKKKP-VGKKGRGRTDDSPVVINARPGGGASRVSRGGGRSSPEDGKKDPLTPTLDTRDTRRYADEVVLPDGHTVHIDVPSP 248
The following BLAST results are available for this feature:
BLAST of NO22G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21452.14.200e-2340.48hypothetical protein Naga_100019g13 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00940NO22G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00940.1NO22G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00940.1.cds1NO22G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00940.1 ID=NO22G00940.1|Name=NO22G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCTCAAAACG
AGGCAGGAAACTTAGCATTATTAGTGGCCTGACCTTGCTCGTGATGGTGG
CCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGCCCGCTCC
CTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTAGCACGGT
AAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAGGACATGG
AGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGAAGACATG
GAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGAAGAAGAA
GAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAGGAGCTGG
CTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGTCGATGAG
GAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACGAGGATGC
GGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGATGATATGG
CAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAAGAGAAAA
TCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGAGGCGCCCAA
GAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAGAAGGGTG
GGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGGAAGTCTG
AACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACACTGGACAC
GCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGACGGTCACA
CAGTCAGCATTGATGTTCCTAGTCCTTAA
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protein sequence of NO22G00940.1

>NO22G00940.1-protein ID=NO22G00940.1-protein|Name=NO22G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MATHAAAAPAPADTSKRGRKLSIISGLTLLVMVAVALGAYIHLTRHDARS
LFHGHRKSPAIRATSTVSAQLRRHLAWGDEEDMEDVLAVGDVGEEDGEDM
EGPGVPEDGSATSTKKKKKKFSFDDELDGDEELAAEEDGNDDEEDGEVDE
EDGEDEGDDGGEDDEDAGDEEGDGDDEEEPDDMAEGGTMTASKKGKKKRK
SRVGDASGANGEKEAPKKKKKNKKKTATKKKKGGSSRGGRSSRMSNAGSL
NQPLDGTKDPLIPTLDTRDNRRFADEVVLPDGHTVSIDVPSP*
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mRNA from alignment at chr22:299308..300186-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00940.1 ID=NO22G00940.1|Name=NO22G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=879bp|location=Sequence derived from alignment at chr22:299308..300186- (Nannochloropsis oceanica)
ATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCTCAAAACG
AGGCAGGAAACTTAGCATTATTAGTGGCCTGACCTTGCTCGTGATGGTGG
CCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGCCCGCTCC
CTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTAGCACGGT
AAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAGGACATGG
AGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGAAGACATG
GAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGAAGAAGAA
GAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAGGAGCTGG
CTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGTCGATGAG
GAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACGAGGATGC
GGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGATGATATGG
CAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAAGAGAAAA
TCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGAGGCGCCCAA
GAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAGAAGGGTG
GGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGGAAGTCTG
AACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACACTGGACAC
GCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGACGGTCACA
CAGTCAGCATTGATGTTCCTAGTCCTTAA
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Coding sequence (CDS) from alignment at chr22:299308..300186-

>NO22G00940.1 ID=NO22G00940.1|Name=NO22G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=879bp|location=Sequence derived from alignment at chr22:299308..300186- (Nannochloropsis oceanica)
ATGGCGACACATGCTGCTGCTGCCCCGGCCCCTGCGGACACCTCAAAACG
AGGCAGGAAACTTAGCATTATTAGTGGCCTGACCTTGCTCGTGATGGTGG
CCGTGGCACTGGGTGCCTACATCCACCTGACCCGCCATGACGCCCGCTCC
CTCTTCCACGGCCACCGCAAATCGCCGGCCATCAGAGCCACTAGCACGGT
AAGTGCCCAGCTTCGACGGCACTTGGCGTGGGGTGACGAAGAGGACATGG
AGGATGTGCTTGCAGTTGGAGATGTTGGTGAGGAGGATGGGGAAGACATG
GAGGGGCCGGGCGTGCCAGAAGACGGATCGGCGACTTCCACGAAGAAGAA
GAAGAAGAAGTTTAGTTTTGACGATGAGTTGGATGGGGACGAGGAGCTGG
CTGCAGAGGAGGATGGGAATGATGACGAGGAGGATGGGGAGGTCGATGAG
GAGGATGGGGAGGACGAGGGGGATGATGGGGGCGAAGATGACGAGGATGC
GGGCGACGAGGAGGGGGATGGGGACGACGAGGAGGAGCCGGATGATATGG
CAGAAGGCGGCACGATGACGGCCTCCAAGAAGGGGAAAAAGAAGAGAAAA
TCTCGAGTGGGTGACGCATCAGGGGCGAACGGGGAGAAAGAGGCGCCCAA
GAAGAAGAAGAAGAATAAGAAGAAGACTGCGACAAAGAAGAAGAAGGGTG
GGTCTTCACGCGGGGGAAGGTCCTCGCGCATGTCAAATGCGGGAAGTCTG
AACCAACCATTGGACGGGACGAAGGATCCCTTAATCCCTACACTGGACAC
GCGGGATAATAGGCGATTCGCAGACGAGGTGGTGCTCCCGGACGGTCACA
CAGTCAGCATTGATGTTCCTAGTCCTTAA
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Synonyms
Publications