NO22G00600, NO22G00600 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00600
Unique Name	NO22G00600
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1820
Alignment location	chr22:201662..203481 -

Link to JBrowse

Properties


Property Name	Value
Description	Peptidylprolyl isomerase

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:201662..203481 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP
IPR001179	PPIase_FKBP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006464	cellular protein modification process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Homology

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: EWM21403.1 (peptidyl-prolyl isomerase fkbp12 [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 5.900e-50
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            M FEK V+QEGTGP PT GSTVTVHCEGLGKNGDLN PFWSTKDPGQ PFTF+IGMG VI+AWDEGVMTMKVGEK+ IKA+PDYAYGA GF AWGI PNSPLNFVIEVLS
Sbjct:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_019418800.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Lupinus angustifolius] >OIV96191.1 hypothetical protein TanjilG_14868 [Lupinus angustifolius])

HSP 1 Score: 173.3 bits (438), Expect = 4.200e-40
Identity = 78/110 (70.91%), Postives = 87/110 (79.09%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            MG EK++L+ GTGP P KG  VTVHC G GKNGDL+  FWSTKDPGQ PFTFKIG G VIK WDEGV+ M++GE S ++ SPDYAYGAGGF AWGI PNS L F IEVLS
Sbjct:    1 MGVEKQLLRPGTGPKPVKGQNVTVHCTGYGKNGDLSQKFWSTKDPGQQPFTFKIGQGSVIKGWDEGVLGMQIGEVSRLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLS 110

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_014518567.1 (peptidyl-prolyl cis-trans isomerase FKBP12 [Vigna radiata var. radiata])

HSP 1 Score: 172.9 bits (437), Expect = 5.500e-40
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLSVN 113
            MG EK++L+ GTGP P  G  VTVHC G GKNGDL   FWSTKDPGQTPF+FKIG G VIK WDEGV+ M++GE + ++ +PDYAYGAGGF AWGI PNS L F IEVLSVN
Sbjct:    1 MGVEKQLLRPGTGPKPLPGQNVTVHCTGFGKNGDLTQKFWSTKDPGQTPFSFKIGQGSVIKGWDEGVIGMQIGEVARLRCTPDYAYGAGGFPAWGIQPNSVLEFEIEVLSVN 112

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_007148377.1 (hypothetical protein PHAVU_006G203300g [Phaseolus vulgaris] >ESW20371.1 hypothetical protein PHAVU_006G203300g [Phaseolus vulgaris])

HSP 1 Score: 172.2 bits (435), Expect = 9.400e-40
Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLSVN 113
            MG EK++L+ GTGP P  G  VTVHC G GKNGDL   FWSTKDPGQTPF+FKIG G VIK WDEGV+ M++GE + ++ +PDYAYGAGGF AWGI PNS L F IEVLS N
Sbjct:    1 MGVEKQLLRPGTGPKPNPGQNVTVHCTGFGKNGDLTQKFWSTKDPGQTPFSFKIGQGSVIKGWDEGVLGMQIGEVARLRCTPDYAYGAGGFPAWGIQPNSVLEFEIEVLSAN 112

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_017435296.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Vigna angularis] >KOM53950.1 hypothetical protein LR48_Vigan09g260900 [Vigna angularis] >BAT86903.1 hypothetical protein VIGAN_05023200 [Vigna angularis var. angularis])

HSP 1 Score: 172.2 bits (435), Expect = 9.400e-40
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLSVN 113
            MG EK++L+ GTGP P  G  VTVHC G GKNGDL   FWSTKDPGQTPF+FKIG G VIK WDEGV+ M++GE + ++ +PDYAYGAGGF AWGI PNS L F IEVLSVN
Sbjct:    1 MGVEKQLLRPGTGPKPLPGQHVTVHCTGFGKNGDLTQKFWSTKDPGQTPFSFKIGQGSVIKGWDEGVIGMQIGEVARLRCTPDYAYGAGGFPAWGIQPNSVLEFEIEVLSVN 112

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_004953995.1 (peptidyl-prolyl cis-trans isomerase FKBP12 [Setaria italica] >KQL31604.1 hypothetical protein SETIT_018759mg [Setaria italica])

HSP 1 Score: 171.8 bits (434), Expect = 1.200e-39
Identity = 77/110 (70.00%), Postives = 90/110 (81.82%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            MGFEKE+L++GTGP PTKG  VTVHC G GK+ DL+  FWSTKDPGQ PF+F IG+G VIK WDEGVMTM+VGE + I+ +PDYAYGA GF+AWGI PNS L F IEV+S
Sbjct:    1 MGFEKEILRDGTGPKPTKGQKVTVHCTGYGKDRDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQVGEVARIQCTPDYAYGANGFSAWGIQPNSVLVFEIEVIS 110

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_006647940.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12 [Oryza brachyantha])

HSP 1 Score: 171.8 bits (434), Expect = 1.200e-39
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            MGFEK++L+ GTGP P KG  VTVHC G GK+GDL+  FWSTKDPGQ PF+F IG G VIK WDEGVMTM++GE + I+ +PDYAYGAGGF AWGI PNS L F IEVLS
Sbjct:    1 MGFEKQILKAGTGPTPVKGQKVTVHCTGFGKDGDLSKKFWSTKDPGQEPFSFNIGQGSVIKGWDEGVMTMQLGEVARIQCTPDYAYGAGGFPAWGIRPNSVLIFEIEVLS 110

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_004290422.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP12-like [Fragaria vesca subsp. vesca] >AEQ63297.1 FK506-binding protein 12 [Fragaria x ananassa])

HSP 1 Score: 171.4 bits (433), Expect = 1.600e-39
Identity = 78/111 (70.27%), Postives = 87/111 (78.38%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLSV 112
            MG EKEVL  GTGP P  G  VTVHC G GKNGDLN+ FWSTKDPGQ PF+FKIG G VIK WDEGV+ M+VGE + ++ SPDYAYG+GGF AWGI PNS L F IEVLS+
Sbjct:    1 MGVEKEVLSAGTGPKPVPGQKVTVHCTGYGKNGDLNLKFWSTKDPGQQPFSFKIGQGSVIKGWDEGVLGMQVGEVARLRCSPDYAYGSGGFPAWGIQPNSVLVFEIEVLSL 111

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: XP_003570588.2 (peptidyl-prolyl cis-trans isomerase FKBP12 [Brachypodium distachyon] >PNT69591.1 hypothetical protein BRADI_3g58255v3 [Brachypodium distachyon])

HSP 1 Score: 171.4 bits (433), Expect = 1.600e-39
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            MGFEKE+L+ GTGP P KG  VTVHC G GK+GDL+  FWSTKDPGQ PF+F IG+G VIK WDEGVMTM++GE + I+ +PDYAYG+GGF AWGI PNS L F IEVLS
Sbjct:   89 MGFEKEILKVGTGPKPVKGQKVTVHCTGYGKDGDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQLGEIARIRCTPDYAYGSGGFPAWGIQPNSVLVFEIEVLS 198

[Close]

BLAST of NO22G00600 vs. NCBI_GenBank
Match: PNT69590.1 (hypothetical protein BRADI_3g58255v3 [Brachypodium distachyon])

HSP 1 Score: 171.4 bits (433), Expect = 1.600e-39
Identity = 77/110 (70.00%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            MGFEKE+L+ GTGP P KG  VTVHC G GK+GDL+  FWSTKDPGQ PF+F IG+G VIK WDEGVMTM++GE + I+ +PDYAYG+GGF AWGI PNS L F IEVLS
Sbjct:   94 MGFEKEILKVGTGPKPVKGQKVTVHCTGYGKDGDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQLGEIARIRCTPDYAYGSGGFPAWGIQPNSVLVFEIEVLS 203

The following BLAST results are available for this feature:

BLAST of NO22G00600 vs. NCBI_GenBank

BLAST of NO22G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21403.1	5.900e-50	85.45	peptidyl-prolyl isomerase fkbp12 [Nannochloropsis ...	[more]
XP_019418800.1	4.200e-40	70.91	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
XP_014518567.1	5.500e-40	68.75	peptidyl-prolyl cis-trans isomerase FKBP12 [Vigna ...	[more]
XP_007148377.1	9.400e-40	67.86	hypothetical protein PHAVU_006G203300g [Phaseolus ...	[more]
XP_017435296.1	9.400e-40	68.75	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
XP_004953995.1	1.200e-39	70.00	peptidyl-prolyl cis-trans isomerase FKBP12 [Setari...	[more]
XP_006647940.1	1.200e-39	70.00	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
XP_004290422.1	1.600e-39	70.27	PREDICTED: peptidyl-prolyl cis-trans isomerase FKB...	[more]
XP_003570588.2	1.600e-39	70.00	peptidyl-prolyl cis-trans isomerase FKBP12 [Brachy...	[more]
PNT69590.1	1.600e-39	70.00	hypothetical protein BRADI_3g58255v3 [Brachypodium...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL033	nonsL033	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR025	ncniR025	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR077	ngnoR077	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO22G00600.1	NO22G00600.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
Naga_100300g3	gene9019	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO22G00600.1	NO22G00600.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO22G00600 ID=NO22G00600|Name=NO22G00600|organism=Nannochloropsis oceanica|type=gene|length=1820bp
GTGATCGCTCACGAATCCTGTTCGCTTGGCGAGGCGTAGTCACACGGCCG
CTTTTCTTTGTCGCGCCGTAGCGCAGGTCTACCAGGACGGACCGGCAGAT
TTCCCGTACTCTGGCATCTGGACAGAGGCAGCAGAGGCAGTCCTTATCCT
AGCGTCGAAGCGAAGCACTGCCTTTTGCCTCTCACCCGTCTCACCGTCCA
CACCGCGTCCACTAAACGATGACTCCGCACAGGGCCTTTCCACATACATC
TCAAGACACTACCGTAACAAAAGATGGGTTTCGAAAAAGAAGTTCTGCAG
GAAGGCACCGGCCCCGCCCCTACCAAAGgtacgaaggagctacgaaagct
gatcttctaatgcggtctttgcagtgtgcgtgcgagttaggaatgacggc
gcgtcggaatgatgtgcgagataatatctgtttctatgtgtcattcgatt
gatctatagactaaccagttgtgcttgtactccgcaaactttctgctgtc
tcagtccttcctctcttcttccctttcctccctgccttcctccctcactt
tcatcagGTTCGACCGTGACGGTCCACTGCGAAGGCCTCGGAAAGAATGG
AGACTTGAACGTGCCGTTTTGGAGCACCAAGGgtatgtacgtgtgcggtg
gaaatcgacgaggggggaaggggataaaagaatctgaaaggggatcaagg
ggaagagaggaggaaagaagaaggaacagaaggggcgtcacttgtcaact
tcttgggtgaaacacacacacattcacacacacacattcacacacacaca
cattcgcacacacacgtacagACCCGGGACAGACGCCCTTTACTTTCAAG
ATCGGCATGGGGGGGgtaagtgatacttctcgcccttggtttgttcttgc
ctcgttctgcgtacttttctcgatttatctcatccatagtttcactttcc
tcttctctaccactgtgtacctttccaatgtactctcgcgctccatgtct
catatttttctcattcacgcttcttctgtcttccctccctccttccgtcc
ctccttttcatagGTGATCAAGGCATGGGATGAAGGTGTGATGACGATGA
AGGTGGGAGAAAAATCCATCATCAAGGCCTCTCCCGATTACGCCTATGGC
GCTGGAGGCTTCGCTGCCTGGGgtacgtgcatcatcttcttcctgacgtg
ttttccatgcccacctcccaagtcgcttatttctccctccctcactccgt
cctttcctccctccctgcttatttcacaccaacagGCATTCTGCCTAATT
CCCCCTTGAACTTCGTGATCGAGGTTCTATCCGTCAACTAAACTATGGCG
CGAAAATGAGTGCAAAGGAGGCACGAAAAAGTAAAAAATTCAAACATTTC
TAATTTTTCAAATATTGGCAACTGCCGAAGCTGAGTTGCTCCCTCAAGGC
GCTGGTCCTGGCTTCCCAAATCAAGAATCAAAAATAAAAAAACTCAGACG
AGAGGAGGAAAAGAAAGTGGAGGGAGTACGGTTTTAAGAAGAGTTAAGGT
ACGGAAGATAAAAATGTTTTGAGTGTTCTTGTAAGGCTGCGCTTCTTGCA
AAATGAGGTCTGTTGTAATGGTTGTGGTGAGACGAGAAAGCTCATGAAAT
AATGTGGGTTTGTGCCGACAGCTTTTTGACAGCAAGCCTTTCCCTCGCAC
CAACATCTATCGAAAGGGGAAGAACACGAGAGGAGAATAATATTTTAGAA
CGAGGAAAAAAGAAGCCAAGAAAGAGGATGTGCGGCAACAAATGCTTGAG
TAGCTTGAGTGGCTGGGGGG

protein sequence of NO22G00600.1

>NO22G00600.1-protein ID=NO22G00600.1-protein|Name=NO22G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPF
TFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNS
PLNFVIEVLSVN*

Synonyms

Publications