NO22G00600.1, NO22G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00600.1
Unique NameNO22G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1091
Alignment locationchr22:201662..203481 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:201662..203481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00600.1 vs.
Match: EWM21403.1 (peptidyl-prolyl isomerase fkbp12 [Nannochloropsis gaditana])

HSP 1 Score: 206.1 bits (523), Expect = 5.900e-50
Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 0 
Query:    1 MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPFTFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNSPLNFVIEVLS 111
            M FEK V+QEGTGP PT GSTVTVHCEGLGKNGDLN PFWSTKDPGQ PFTF+IGMG VI+AWDEGVMTMKVGEK+ IKA+PDYAYGA GF AWGI PNSPLNFVIEVLS
Sbjct:   16 MAFEKVVMQEGTGPTPTPGSTVTVHCEGLGKNGDLNAPFWSTKDPGQQPFTFQIGMGKVIRAWDEGVMTMKVGEKATIKATPDYAYGAAGFPAWGIQPNSPLNFVIEVLS 125
The following BLAST results are available for this feature:
BLAST of NO22G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21403.15.900e-5085.45peptidyl-prolyl isomerase fkbp12 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00600NO22G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00600.1NO22G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00600.1.cds1NO22G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00600.1.cds2NO22G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00600.1.cds3NO22G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00600.1.cds4NO22G00600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00600.1.cds5NO22G00600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00600.1 ID=NO22G00600.1|Name=NO22G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1091bp
GTGATCGCTCACGAATCCTGTTCGCTTGGCGAGGCGTAGTCACACGGCCG
CTTTTCTTTGTCGCGCCGTAGCGCAGGTCTACCAGGACGGACCGGCAGAT
TTCCCGTACTCTGGCATCTGGACAGAGGCAGCAGAGGCAGTCCTTATCCT
AGCGTCGAAGCGAAGCACTGCCTTTTGCCTCTCACCCGTCTCACCGTCCA
CACCGCGTCCACTAAACGATGACTCCGCACAGGGCCTTTCCACATACATC
TCAAGACACTACCGTAACAAAAGATGGGTTTCGAAAAAGAAGTTCTGCAG
GAAGGCACCGGCCCCGCCCCTACCAAAGGTTCGACCGTGACGGTCCACTG
CGAAGGCCTCGGAAAGAATGGAGACTTGAACGTGCCGTTTTGGAGCACCA
AGGACCCGGGACAGACGCCCTTTACTTTCAAGATCGGCATGGGGGGGGTG
ATCAAGGCATGGGATGAAGGTGTGATGACGATGAAGGTGGGAGAAAAATC
CATCATCAAGGCCTCTCCCGATTACGCCTATGGCGCTGGAGGCTTCGCTG
CCTGGGGCATTCTGCCTAATTCCCCCTTGAACTTCGTGATCGAGGTTCTA
TCCGTCAACTAAACTATGGCGCGAAAATGAGTGCAAAGGAGGCACGAAAA
AGTAAAAAATTCAAACATTTCTAATTTTTCAAATATTGGCAACTGCCGAA
GCTGAGTTGCTCCCTCAAGGCGCTGGTCCTGGCTTCCCAAATCAAGAATC
AAAAATAAAAAAACTCAGACGAGAGGAGGAAAAGAAAGTGGAGGGAGTAC
GGTTTTAAGAAGAGTTAAGGTACGGAAGATAAAAATGTTTTGAGTGTTCT
TGTAAGGCTGCGCTTCTTGCAAAATGAGGTCTGTTGTAATGGTTGTGGTG
AGACGAGAAAGCTCATGAAATAATGTGGGTTTGTGCCGACAGCTTTTTGA
CAGCAAGCCTTTCCCTCGCACCAACATCTATCGAAAGGGGAAGAACACGA
GAGGAGAATAATATTTTAGAACGAGGAAAAAAGAAGCCAAGAAAGAGGAT
GTGCGGCAACAAATGCTTGAGTAGCTTGAGTGGCTGGGGGG
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protein sequence of NO22G00600.1

>NO22G00600.1-protein ID=NO22G00600.1-protein|Name=NO22G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MGFEKEVLQEGTGPAPTKGSTVTVHCEGLGKNGDLNVPFWSTKDPGQTPF
TFKIGMGGVIKAWDEGVMTMKVGEKSIIKASPDYAYGAGGFAAWGILPNS
PLNFVIEVLSVN*
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mRNA from alignment at chr22:201662..203481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00600.1 ID=NO22G00600.1|Name=NO22G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at chr22:201662..203481- (Nannochloropsis oceanica)
GTGATCGCTCACGAATCCTGTTCGCTTGGCGAGGCGTAGTCACACGGCCG
CTTTTCTTTGTCGCGCCGTAGCGCAGGTCTACCAGGACGGACCGGCAGAT
TTCCCGTACTCTGGCATCTGGACAGAGGCAGCAGAGGCAGTCCTTATCCT
AGCGTCGAAGCGAAGCACTGCCTTTTGCCTCTCACCCGTCTCACCGTCCA
CACCGCGTCCACTAAACGATGACTCCGCACAGGGCCTTTCCACATACATC
TCAAGACACTACCGTAACAAAAGATGGGTTTCGAAAAAGAAGTTCTGCAG
GAAGGCACCGGCCCCGCCCCTACCAAAGGTACGAAGGAGCTACGAAAGCT
GATCTTCTAATGCGGTCTTTGCAGTGTGCGTGCGAGTTAGGAATGACGGC
GCGTCGGAATGATGTGCGAGATAATATCTGTTTCTATGTGTCATTCGATT
GATCTATAGACTAACCAGTTGTGCTTGTACTCCGCAAACTTTCTGCTGTC
TCAGTCCTTCCTCTCTTCTTCCCTTTCCTCCCTGCCTTCCTCCCTCACTT
TCATCAGGTTCGACCGTGACGGTCCACTGCGAAGGCCTCGGAAAGAATGG
AGACTTGAACGTGCCGTTTTGGAGCACCAAGGGTATGTACGTGTGCGGTG
GAAATCGACGAGGGGGGAAGGGGATAAAAGAATCTGAAAGGGGATCAAGG
GGAAGAGAGGAGGAAAGAAGAAGGAACAGAAGGGGCGTCACTTGTCAACT
TCTTGGGTGAAACACACACACATTCACACACACACATTCACACACACACA
CATTCGCACACACACGTACAGACCCGGGACAGACGCCCTTTACTTTCAAG
ATCGGCATGGGGGGGGTAAGTGATACTTCTCGCCCTTGGTTTGTTCTTGC
CTCGTTCTGCGTACTTTTCTCGATTTATCTCATCCATAGTTTCACTTTCC
TCTTCTCTACCACTGTGTACCTTTCCAATGTACTCTCGCGCTCCATGTCT
CATATTTTTCTCATTCACGCTTCTTCTGTCTTCCCTCCCTCCTTCCGTCC
CTCCTTTTCATAGGTGATCAAGGCATGGGATGAAGGTGTGATGACGATGA
AGGTGGGAGAAAAATCCATCATCAAGGCCTCTCCCGATTACGCCTATGGC
GCTGGAGGCTTCGCTGCCTGGGGTACGTGCATCATCTTCTTCCTGACGTG
TTTTCCATGCCCACCTCCCAAGTCGCTTATTTCTCCCTCCCTCACTCCGT
CCTTTCCTCCCTCCCTGCTTATTTCACACCAACAGGCATTCTGCCTAATT
CCCCCTTGAACTTCGTGATCGAGGTTCTATCCGTCAACTAAACTATGGCG
CGAAAATGAGTGCAAAGGAGGCACGAAAAAGTAAAAAATTCAAACATTTC
TAATTTTTCAAATATTGGCAACTGCCGAAGCTGAGTTGCTCCCTCAAGGC
GCTGGTCCTGGCTTCCCAAATCAAGAATCAAAAATAAAAAAACTCAGACG
AGAGGAGGAAAAGAAAGTGGAGGGAGTACGGTTTTAAGAAGAGTTAAGGT
ACGGAAGATAAAAATGTTTTGAGTGTTCTTGTAAGGCTGCGCTTCTTGCA
AAATGAGGTCTGTTGTAATGGTTGTGGTGAGACGAGAAAGCTCATGAAAT
AATGTGGGTTTGTGCCGACAGCTTTTTGACAGCAAGCCTTTCCCTCGCAC
CAACATCTATCGAAAGGGGAAGAACACGAGAGGAGAATAATATTTTAGAA
CGAGGAAAAAAGAAGCCAAGAAAGAGGATGTGCGGCAACAAATGCTTGAG
TAGCTTGAGTGGCTGGGGGG
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Coding sequence (CDS) from alignment at chr22:201662..203481-

>NO22G00600.1 ID=NO22G00600.1|Name=NO22G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at chr22:201662..203481- (Nannochloropsis oceanica)
ATGGGTTTCGAAAAAGAAGTTCTGCAGGAAGGCACCGGCCCCGCCCCTAC
CAAAGGTTCGACCGTGACGGTCCACTGCGAAGGCCTCGGAAAGAATGGAG
ACTTGAACGTGCCGTTTTGGAGCACCAAGGACCCGGGACAGACGCCCTTT
ACTTTCAAGATCGGCATGGGGGGGGTGATCAAGGCATGGGATGAAGGTGT
GATGACGATGAAGGTGGGAGAAAAATCCATCATCAAGGCCTCTCCCGATT
ACGCCTATGGCGCTGGAGGCTTCGCTGCCTGGGGCATTCTGCCTAATTCC
CCCTTGAACTTCGTGATCGAGGTTCTATCCGTCAACTAA
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Synonyms
Publications