NO22G00590, NO22G00590 (gene) Nannochloropsis oceanica

Overview
NameNO22G00590
Unique NameNO22G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2253
Alignment locationchr22:199416..201668 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:199416..201668 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G00590 vs. NCBI_GenBank
Match: EWM21401.1 (hypothetical protein Naga_100300g5 [Nannochloropsis gaditana])

HSP 1 Score: 161.8 bits (408), Expect = 4.500e-36
Identity = 123/274 (44.89%), Postives = 151/274 (55.11%), Query Frame = 0 
Query:  125 VRYPRLNYSEAIPPSDRTLLSPDISDADKLLYLATRVMETDTLQVERILLSTKYNHLSQEMGKYAKIVEKRLGTALARDXXXXXXXXXXXXXXXXXXXXEGRICEGLEEEVGRLRKDLAKWEGMEREVMADEGGEGGIKNKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPFPSPVMDETTALLSQGPAIRQKVLSTATQLLEALEQQLPTWEEKEAEGREKQKELAAAFTGGAFAGLPAVGAPKEAAKKVVGG 399
            VRYPRLNY+EA+PP++RT +SPD+ D DKLLYLA+RVME DTLQVER+L+STKY HLS EM KYA +V KRL   L  D     XXXXXXXXXXXXXXX          E G+LRK L  WE M+RE M  EGG                                                         + SPV +ET  LL+QGP IR  +L +A QL++ALE ++    + E   + +QK LAAAF   +FAG+PA+G P  A K+  GG
Sbjct:  148 VRYPRLNYAEAVPPTERTFISPDVPDTDKLLYLASRVMEADTLQVERMLMSTKYQHLSHEMEKYAGMVGKRLRRVLEEDARAEVXXXXXXXXXXXXXXXXXXXXXXXXXEAGKLRKVLRIWEEMDRE-MEVEGGR--------------------FTDQVGAARAAEMERAEGALASQERSRTGGTETAAGYTSPVTEETLTLLAQGPGIRAHILESAGQLVDALEGKVAEVRQVEEAAKGQQKALAAAFRAVSFAGIPAMGEPAVALKRAGGG 400
The following BLAST results are available for this feature:
BLAST of NO22G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21401.14.500e-3644.89hypothetical protein Naga_100300g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004211NSK004211Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00590.1NO22G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00590.1NO22G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00590 ID=NO22G00590|Name=NO22G00590|organism=Nannochloropsis oceanica|type=gene|length=2253bp
ACAGGACATTGCCTTAGCCCAGTGCTAAGGAGAGCTCCGTGTTGGACGTC
GCCCATACACAAGTCGCAACACGACAACCTTGCGCACACCCGCGACCAGC
GAACGATGCGGAACGGCAAGAGTAGTGTGGCGGGTGGGGGTAGCGCCACG
ATTGATTATGCGgtgagtgttgtttgtaggtcgtgagtatggccgccgcc
tcatcatcatcatcagccggccatgtcccttcactaacgatcagtctatc
acctgtccttcataccacggcgaaatgagtggtgatattgctgctgaatg
ggatggttgtagtttttggatgcatggtcactctcgttaccggctgcttt
ctcacatgcccgccctcacttcaccctccctccccaccctcccctccacc
agGACGTGGCCCACACCACCGTGACGACACCCGTGGCGTCGGGCAAGTCT
TCTTCCTCCGCTGGAGCAGCAGCAGCAAAGCGAAAGCAGCAGGCTATGGG
CAAGGGTGGAGTTGGGAAGGATGGAGCAGCACCATTAGCAGGAGCGGGAG
CTAGGGGAGGAGACAAGGAGAATCAACGGCGGAATGGACATGGGGGAGGA
GCAGCAACAGCAGCAGCAGCAGAGGACGAGAAGAAGAAAGGCCACAAACG
TGCTAAGACTCAGGAGTCCTCCCACCCACCACCATCACAATCTTCTTCCT
CCTCCACCACCACCTCAGTCCGATATCCCCGCCTCAATTACTCCGAAGCC
ATTCCCCCCTCCGATCGGACACTCCTCTCTCCCGACATCAGCGACGCCGA
CAAGCTGCTTTATCTCGCGACTCGAGTCATGGAAACAGACACTTTGCAAG
TCGAACGGATTTTGCTGTCCACCAAATACAACCATTTATCCCAAGAAATG
GGAAAATACGCAAAAATTGTGGAGAAACGACTTGGCACAGCCCTAGCCCG
CGATGCGAAGGAAGAGAAGGAGGAGGTGGAGATGCTGAAAAAGCTGAAAC
AGCAGCGGGAGGAGGAAGGGAGGATATGCGAAGGGTTGGAAGAGGAAGTG
GGGAGGCTGAGAAAAGACCTCGCCAAGTGGGAAGGTATGGAGAGGGAGGT
CATGGCGGATGAGGGGGGGGAGGGAGGGATCAAGAATAAGGTGATGGCTG
CGAGAAAAGAGGAGGAAGCTCGGGAAGATGCAGCCATGACCGCCTCCGCA
GCCGTCGCCGCTGCCGCCGCAACAGCTTTAACGACGAAAGGGAAAAGAAA
ATCCTCTTCTTCCTCCCTGCAGCAGCCGCAGCAACGTCCTTTCCCTTCTC
CTGTCATGGACGAGACGACCGCTCTCCTGTCACAAGGGCCGGCAATCCGC
CAAAAAGTACTTAGTACAGCCACGCAGCTTCTCGAGGCGCTCGAACAGCA
ATTACCGACGTGGGAGGAGAAGGAGGCAGAAGGGAGGGAGAAGCAGAAGG
AGCTTGCTGCTGCGTTTACGGGCGGAGCGTTTGCAGGTTTGCCTGCCGTT
GGAGCGCCGAAGGAGGCAGCGAAGAAGGTTGTGGGGGGAGTGGGCAAGAA
AAAGTGAGATGGAGTAGAAGAAGGATGTGGTGGAGGAGGAAGAAGAAGAG
ATGCAGGGACAGAAAGAGCAGCAGAAGCGGAAATGGAAAGGAAAGAAAAA
TGTACCCATATATGAATTTATAACGACATACGCGTGTAATGTGACAAAGG
AATTTGCGGATATTCTCCCTGTGTGTTGAGTTCTTGTGTGGCTGATGGAA
GAAGAACGAAGAAGAACGAAGAAGGTGTTAGAGAAGGAAAAAGGGGAGAA
GATGATGTAGGGAAGAAAGCGGAGGAAAAGATGATAGTAGAGAGGAAAGT
AGTCAAGAAGGATGGAAAGGTTGACGGAAGGCACAATTTACACCATTAAT
ATCAGCAGATCAAGAACAGCAGCAATACGAAAAGCATCTCCATCATCATC
ATTATCATCACCATCGGCAGCAGGAGTAGCCGCAGCGGAGGCAGCAGGCG
ACACTTGTACGAAGGGCAGTGGTCGCACAAGTTCGGTCTTTCATGTGAAG
TAGGGAGGTGACAAATGCGAGGAGGAAAACGAGCAAGGCCGAGGGAAAAC
GACAAAAAAAAATGAACCCTGAAAGCTACACAGGAAATCTGAGGGTGTAC
GGAAGAAGAGGAAGGGAGGAGAAGAAGCGATGGGGAAAAAGGGAGACATT
TCTTGAAAATAAATCAAAGAAAGATCGGACGAGCAAGCGCTAGCAGCCCC
CCA
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protein sequence of NO22G00590.1

>NO22G00590.1-protein ID=NO22G00590.1-protein|Name=NO22G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MRNGKSSVAGGGSATIDYADVAHTTVTTPVASGKSSSSAGAAAAKRKQQA
MGKGGVGKDGAAPLAGAGARGGDKENQRRNGHGGGAATAAAAEDEKKKGH
KRAKTQESSHPPPSQSSSSSTTTSVRYPRLNYSEAIPPSDRTLLSPDISD
ADKLLYLATRVMETDTLQVERILLSTKYNHLSQEMGKYAKIVEKRLGTAL
ARDAKEEKEEVEMLKKLKQQREEEGRICEGLEEEVGRLRKDLAKWEGMER
EVMADEGGEGGIKNKVMAARKEEEAREDAAMTASAAVAAAAATALTTKGK
RKSSSSSLQQPQQRPFPSPVMDETTALLSQGPAIRQKVLSTATQLLEALE
QQLPTWEEKEAEGREKQKELAAAFTGGAFAGLPAVGAPKEAAKKVVGGVG
KKK*
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Synonyms
Publications