NO22G00590.1, NO22G00590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00590.1
Unique NameNO22G00590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2013
Alignment locationchr22:199416..201668 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:199416..201668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00590.1 vs.
Match: EWM21401.1 (hypothetical protein Naga_100300g5 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 8.500e-59
Identity = 195/428 (45.56%), Postives = 246/428 (57.48%), Query Frame = 0 
Query:    1 MRNGKSSVAGGGSATIDYADVAHTTVTTPVASGKSSSSAGAAAAKRKQQAMGKGGVGKDGAAPLAGAGARGG--------DKENQRRNGHGGGAAT------AAAAEDEKKKGHKRAKTQ---ESSHPPPSQ--------SSSSSTTT-----SVRYPRLNYSEAIPPSDRTLLSPDISDADKLLYLATRVMETDTLQVERILLSTKYNHLSQEMGKYAKIVEKRLGTALARDAKEEKEEVEMLKKLKQQREEEGRICEGLEEEVGRLRKDLAKWEGMEREVMADEGGEGGIKNKVMAARKEEEAREDAAMTASAAVAAAAATALTTKGKRKSSSSSLQQPQQRPFPSPVMDETTALLSQGPAIRQKVLSTATQLLEALEQQLPTWEEKEAEGREKQKELAAAFTGGAFAGLPAVGAPKEAAKKVVGG 399
            MRNGKSSV GGG+ TI+YADVAHTTVTTPVAS     S G A  KRKQ A+ K       A    G    GG        DKEN+RR G  GG            A  +  K  KRAK      S  PPPS         SSSSS+ +     SVRYPRLNY+EA+PP++RT +SPD+ D DKLLYLA+RVME DTLQVER+L+STKY HLS EM KYA +V KRL   L  DA+ E  E+  L++L+++R E    C+ L+EE G+LRK L  WE M+RE M  EGG     ++V AAR  E  R + A+        A+     T G   ++           + SPV +ET  LL+QGP IR  +L +A QL++ALE ++    + E   + +QK LAAAF   +FAG+PA+G P  A K+  GG
Sbjct:    1 MRNGKSSV-GGGNTTINYADVAHTTVTTPVAS----KSVGGA--KRKQAAITKNERRHPEAGARTGGDRAGGPTVRDVAVDKENRRRQGATGGNGRDKEEMGRERAGGDLSKAAKRAKPSGPITSVPPPPSHPQSSPSAPSSSSSSASGAQPASVRYPRLNYAEAVPPTERTFISPDVPDTDKLLYLASRVMEADTLQVERMLMSTKYQHLSHEMEKYAGMVGKRLRRVLEEDARAEVAELGELERLRRERREAVAACDALDEEAGKLRKVLRIWEEMDRE-MEVEGGR--FTDQVGAARAAEMERAEGAL--------ASQERSRTGGTETAAG----------YTSPVTEETLTLLAQGPGIRAHILESAGQLVDALEGKVAEVRQVEEAAKGQQKALAAAFRAVSFAGIPAMGEPAVALKRAGGG 400
The following BLAST results are available for this feature:
BLAST of NO22G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21401.18.500e-5945.56hypothetical protein Naga_100300g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00590NO22G00590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00590.1NO22G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00590.1.cds1NO22G00590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00590.1.cds2NO22G00590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00590.1 ID=NO22G00590.1|Name=NO22G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2013bp
ACAGGACATTGCCTTAGCCCAGTGCTAAGGAGAGCTCCGTGTTGGACGTC
GCCCATACACAAGTCGCAACACGACAACCTTGCGCACACCCGCGACCAGC
GAACGATGCGGAACGGCAAGAGTAGTGTGGCGGGTGGGGGTAGCGCCACG
ATTGATTATGCGGACGTGGCCCACACCACCGTGACGACACCCGTGGCGTC
GGGCAAGTCTTCTTCCTCCGCTGGAGCAGCAGCAGCAAAGCGAAAGCAGC
AGGCTATGGGCAAGGGTGGAGTTGGGAAGGATGGAGCAGCACCATTAGCA
GGAGCGGGAGCTAGGGGAGGAGACAAGGAGAATCAACGGCGGAATGGACA
TGGGGGAGGAGCAGCAACAGCAGCAGCAGCAGAGGACGAGAAGAAGAAAG
GCCACAAACGTGCTAAGACTCAGGAGTCCTCCCACCCACCACCATCACAA
TCTTCTTCCTCCTCCACCACCACCTCAGTCCGATATCCCCGCCTCAATTA
CTCCGAAGCCATTCCCCCCTCCGATCGGACACTCCTCTCTCCCGACATCA
GCGACGCCGACAAGCTGCTTTATCTCGCGACTCGAGTCATGGAAACAGAC
ACTTTGCAAGTCGAACGGATTTTGCTGTCCACCAAATACAACCATTTATC
CCAAGAAATGGGAAAATACGCAAAAATTGTGGAGAAACGACTTGGCACAG
CCCTAGCCCGCGATGCGAAGGAAGAGAAGGAGGAGGTGGAGATGCTGAAA
AAGCTGAAACAGCAGCGGGAGGAGGAAGGGAGGATATGCGAAGGGTTGGA
AGAGGAAGTGGGGAGGCTGAGAAAAGACCTCGCCAAGTGGGAAGGTATGG
AGAGGGAGGTCATGGCGGATGAGGGGGGGGAGGGAGGGATCAAGAATAAG
GTGATGGCTGCGAGAAAAGAGGAGGAAGCTCGGGAAGATGCAGCCATGAC
CGCCTCCGCAGCCGTCGCCGCTGCCGCCGCAACAGCTTTAACGACGAAAG
GGAAAAGAAAATCCTCTTCTTCCTCCCTGCAGCAGCCGCAGCAACGTCCT
TTCCCTTCTCCTGTCATGGACGAGACGACCGCTCTCCTGTCACAAGGGCC
GGCAATCCGCCAAAAAGTACTTAGTACAGCCACGCAGCTTCTCGAGGCGC
TCGAACAGCAATTACCGACGTGGGAGGAGAAGGAGGCAGAAGGGAGGGAG
AAGCAGAAGGAGCTTGCTGCTGCGTTTACGGGCGGAGCGTTTGCAGGTTT
GCCTGCCGTTGGAGCGCCGAAGGAGGCAGCGAAGAAGGTTGTGGGGGGAG
TGGGCAAGAAAAAGTGAGATGGAGTAGAAGAAGGATGTGGTGGAGGAGGA
AGAAGAAGAGATGCAGGGACAGAAAGAGCAGCAGAAGCGGAAATGGAAAG
GAAAGAAAAATGTACCCATATATGAATTTATAACGACATACGCGTGTAAT
GTGACAAAGGAATTTGCGGATATTCTCCCTGTGTGTTGAGTTCTTGTGTG
GCTGATGGAAGAAGAACGAAGAAGAACGAAGAAGGTGTTAGAGAAGGAAA
AAGGGGAGAAGATGATGTAGGGAAGAAAGCGGAGGAAAAGATGATAGTAG
AGAGGAAAGTAGTCAAGAAGGATGGAAAGGTTGACGGAAGGCACAATTTA
CACCATTAATATCAGCAGATCAAGAACAGCAGCAATACGAAAAGCATCTC
CATCATCATCATTATCATCACCATCGGCAGCAGGAGTAGCCGCAGCGGAG
GCAGCAGGCGACACTTGTACGAAGGGCAGTGGTCGCACAAGTTCGGTCTT
TCATGTGAAGTAGGGAGGTGACAAATGCGAGGAGGAAAACGAGCAAGGCC
GAGGGAAAACGACAAAAAAAAATGAACCCTGAAAGCTACACAGGAAATCT
GAGGGTGTACGGAAGAAGAGGAAGGGAGGAGAAGAAGCGATGGGGAAAAA
GGGAGACATTTCTTGAAAATAAATCAAAGAAAGATCGGACGAGCAAGCGC
TAGCAGCCCCCCA
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protein sequence of NO22G00590.1

>NO22G00590.1-protein ID=NO22G00590.1-protein|Name=NO22G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MRNGKSSVAGGGSATIDYADVAHTTVTTPVASGKSSSSAGAAAAKRKQQA
MGKGGVGKDGAAPLAGAGARGGDKENQRRNGHGGGAATAAAAEDEKKKGH
KRAKTQESSHPPPSQSSSSSTTTSVRYPRLNYSEAIPPSDRTLLSPDISD
ADKLLYLATRVMETDTLQVERILLSTKYNHLSQEMGKYAKIVEKRLGTAL
ARDAKEEKEEVEMLKKLKQQREEEGRICEGLEEEVGRLRKDLAKWEGMER
EVMADEGGEGGIKNKVMAARKEEEAREDAAMTASAAVAAAAATALTTKGK
RKSSSSSLQQPQQRPFPSPVMDETTALLSQGPAIRQKVLSTATQLLEALE
QQLPTWEEKEAEGREKQKELAAAFTGGAFAGLPAVGAPKEAAKKVVGGVG
KKK*
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mRNA from alignment at chr22:199416..201668+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00590.1 ID=NO22G00590.1|Name=NO22G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=2253bp|location=Sequence derived from alignment at chr22:199416..201668+ (Nannochloropsis oceanica)
ACAGGACATTGCCTTAGCCCAGTGCTAAGGAGAGCTCCGTGTTGGACGTC
GCCCATACACAAGTCGCAACACGACAACCTTGCGCACACCCGCGACCAGC
GAACGATGCGGAACGGCAAGAGTAGTGTGGCGGGTGGGGGTAGCGCCACG
ATTGATTATGCGGTGAGTGTTGTTTGTAGGTCGTGAGTATGGCCGCCGCC
TCATCATCATCATCAGCCGGCCATGTCCCTTCACTAACGATCAGTCTATC
ACCTGTCCTTCATACCACGGCGAAATGAGTGGTGATATTGCTGCTGAATG
GGATGGTTGTAGTTTTTGGATGCATGGTCACTCTCGTTACCGGCTGCTTT
CTCACATGCCCGCCCTCACTTCACCCTCCCTCCCCACCCTCCCCTCCACC
AGGACGTGGCCCACACCACCGTGACGACACCCGTGGCGTCGGGCAAGTCT
TCTTCCTCCGCTGGAGCAGCAGCAGCAAAGCGAAAGCAGCAGGCTATGGG
CAAGGGTGGAGTTGGGAAGGATGGAGCAGCACCATTAGCAGGAGCGGGAG
CTAGGGGAGGAGACAAGGAGAATCAACGGCGGAATGGACATGGGGGAGGA
GCAGCAACAGCAGCAGCAGCAGAGGACGAGAAGAAGAAAGGCCACAAACG
TGCTAAGACTCAGGAGTCCTCCCACCCACCACCATCACAATCTTCTTCCT
CCTCCACCACCACCTCAGTCCGATATCCCCGCCTCAATTACTCCGAAGCC
ATTCCCCCCTCCGATCGGACACTCCTCTCTCCCGACATCAGCGACGCCGA
CAAGCTGCTTTATCTCGCGACTCGAGTCATGGAAACAGACACTTTGCAAG
TCGAACGGATTTTGCTGTCCACCAAATACAACCATTTATCCCAAGAAATG
GGAAAATACGCAAAAATTGTGGAGAAACGACTTGGCACAGCCCTAGCCCG
CGATGCGAAGGAAGAGAAGGAGGAGGTGGAGATGCTGAAAAAGCTGAAAC
AGCAGCGGGAGGAGGAAGGGAGGATATGCGAAGGGTTGGAAGAGGAAGTG
GGGAGGCTGAGAAAAGACCTCGCCAAGTGGGAAGGTATGGAGAGGGAGGT
CATGGCGGATGAGGGGGGGGAGGGAGGGATCAAGAATAAGGTGATGGCTG
CGAGAAAAGAGGAGGAAGCTCGGGAAGATGCAGCCATGACCGCCTCCGCA
GCCGTCGCCGCTGCCGCCGCAACAGCTTTAACGACGAAAGGGAAAAGAAA
ATCCTCTTCTTCCTCCCTGCAGCAGCCGCAGCAACGTCCTTTCCCTTCTC
CTGTCATGGACGAGACGACCGCTCTCCTGTCACAAGGGCCGGCAATCCGC
CAAAAAGTACTTAGTACAGCCACGCAGCTTCTCGAGGCGCTCGAACAGCA
ATTACCGACGTGGGAGGAGAAGGAGGCAGAAGGGAGGGAGAAGCAGAAGG
AGCTTGCTGCTGCGTTTACGGGCGGAGCGTTTGCAGGTTTGCCTGCCGTT
GGAGCGCCGAAGGAGGCAGCGAAGAAGGTTGTGGGGGGAGTGGGCAAGAA
AAAGTGAGATGGAGTAGAAGAAGGATGTGGTGGAGGAGGAAGAAGAAGAG
ATGCAGGGACAGAAAGAGCAGCAGAAGCGGAAATGGAAAGGAAAGAAAAA
TGTACCCATATATGAATTTATAACGACATACGCGTGTAATGTGACAAAGG
AATTTGCGGATATTCTCCCTGTGTGTTGAGTTCTTGTGTGGCTGATGGAA
GAAGAACGAAGAAGAACGAAGAAGGTGTTAGAGAAGGAAAAAGGGGAGAA
GATGATGTAGGGAAGAAAGCGGAGGAAAAGATGATAGTAGAGAGGAAAGT
AGTCAAGAAGGATGGAAAGGTTGACGGAAGGCACAATTTACACCATTAAT
ATCAGCAGATCAAGAACAGCAGCAATACGAAAAGCATCTCCATCATCATC
ATTATCATCACCATCGGCAGCAGGAGTAGCCGCAGCGGAGGCAGCAGGCG
ACACTTGTACGAAGGGCAGTGGTCGCACAAGTTCGGTCTTTCATGTGAAG
TAGGGAGGTGACAAATGCGAGGAGGAAAACGAGCAAGGCCGAGGGAAAAC
GACAAAAAAAAATGAACCCTGAAAGCTACACAGGAAATCTGAGGGTGTAC
GGAAGAAGAGGAAGGGAGGAGAAGAAGCGATGGGGAAAAAGGGAGACATT
TCTTGAAAATAAATCAAAGAAAGATCGGACGAGCAAGCGCTAGCAGCCCC
CCA
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Coding sequence (CDS) from alignment at chr22:199416..201668+

>NO22G00590.1 ID=NO22G00590.1|Name=NO22G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at chr22:199416..201668+ (Nannochloropsis oceanica)
ATGCGGAACGGCAAGAGTAGTGTGGCGGGTGGGGGTAGCGCCACGATTGA
TTATGCGGACGTGGCCCACACCACCGTGACGACACCCGTGGCGTCGGGCA
AGTCTTCTTCCTCCGCTGGAGCAGCAGCAGCAAAGCGAAAGCAGCAGGCT
ATGGGCAAGGGTGGAGTTGGGAAGGATGGAGCAGCACCATTAGCAGGAGC
GGGAGCTAGGGGAGGAGACAAGGAGAATCAACGGCGGAATGGACATGGGG
GAGGAGCAGCAACAGCAGCAGCAGCAGAGGACGAGAAGAAGAAAGGCCAC
AAACGTGCTAAGACTCAGGAGTCCTCCCACCCACCACCATCACAATCTTC
TTCCTCCTCCACCACCACCTCAGTCCGATATCCCCGCCTCAATTACTCCG
AAGCCATTCCCCCCTCCGATCGGACACTCCTCTCTCCCGACATCAGCGAC
GCCGACAAGCTGCTTTATCTCGCGACTCGAGTCATGGAAACAGACACTTT
GCAAGTCGAACGGATTTTGCTGTCCACCAAATACAACCATTTATCCCAAG
AAATGGGAAAATACGCAAAAATTGTGGAGAAACGACTTGGCACAGCCCTA
GCCCGCGATGCGAAGGAAGAGAAGGAGGAGGTGGAGATGCTGAAAAAGCT
GAAACAGCAGCGGGAGGAGGAAGGGAGGATATGCGAAGGGTTGGAAGAGG
AAGTGGGGAGGCTGAGAAAAGACCTCGCCAAGTGGGAAGGTATGGAGAGG
GAGGTCATGGCGGATGAGGGGGGGGAGGGAGGGATCAAGAATAAGGTGAT
GGCTGCGAGAAAAGAGGAGGAAGCTCGGGAAGATGCAGCCATGACCGCCT
CCGCAGCCGTCGCCGCTGCCGCCGCAACAGCTTTAACGACGAAAGGGAAA
AGAAAATCCTCTTCTTCCTCCCTGCAGCAGCCGCAGCAACGTCCTTTCCC
TTCTCCTGTCATGGACGAGACGACCGCTCTCCTGTCACAAGGGCCGGCAA
TCCGCCAAAAAGTACTTAGTACAGCCACGCAGCTTCTCGAGGCGCTCGAA
CAGCAATTACCGACGTGGGAGGAGAAGGAGGCAGAAGGGAGGGAGAAGCA
GAAGGAGCTTGCTGCTGCGTTTACGGGCGGAGCGTTTGCAGGTTTGCCTG
CCGTTGGAGCGCCGAAGGAGGCAGCGAAGAAGGTTGTGGGGGGAGTGGGC
AAGAAAAAGTGA
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Synonyms
Publications