NO22G00510, NO22G00510 (gene) Nannochloropsis oceanica

Overview
NameNO22G00510
Unique NameNO22G00510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1342
Alignment locationchr22:171123..172464 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:171123..172464 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO22G00510 vs. NCBI_GenBank
Match: XP_005854700.1 (hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >EKU21656.1 hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526] >EWM21388.1 hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 1.300e-50
Identity = 119/158 (75.32%), Postives = 129/158 (81.65%), Query Frame = 0
Query:    1 MTVKVCFSSLLLLG-LLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            M+ K   SSLL+L  L +S  AFVPRQL RTP  QQR QGR+ MALP NA+ASLGLLLTASTGLY+P S     P  S +NQAFTS TLSKEVE RQGMY EYTVEKTGQQ+ENAEGTFKTK+ET  NKNKYVAILAVLL+GSCVIPMAQYFWYVKDD
Sbjct:    2 MSSKAFASSLLILSFLFASTWAFVPRQLTRTP-LQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSS-----PPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: EWM21387.1 (hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 1.300e-50
Identity = 119/158 (75.32%), Postives = 129/158 (81.65%), Query Frame = 0
Query:    1 MTVKVCFSSLLLLG-LLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            M+ K   SSLL+L  L +S  AFVPRQL RTP  QQR QGR+ MALP NA+ASLGLLLTASTGLY+P S     P  S +NQAFTS TLSKEVE RQGMY EYTVEKTGQQ+ENAEGTFKTK+ET  NKNKYVAILAVLL+GSCVIPMAQYFWYVKDD
Sbjct:    9 MSSKAFASSLLILSFLFASTWAFVPRQLTRTP-LQQRGQGRLHMALPGNAMASLGLLLTASTGLYAPSS-----PPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 160          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: XP_002176725.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC51188.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 85.1 bits (209), Expect = 2.100e-13
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 0
Query:   47 QNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            Q A A      T +T   S P+  +  P FS +N      T       R+GMYGEYT +   Q +++A  TFK  +ET   K KY A+LAVL++GS +IPMAQYFWYV+DD
Sbjct:   35 QKAAAGAFAAFTIATSSLSAPAADALTPVFSSSNVVAEKVT-------REGMYGEYTTDLV-QTYDDARSTFKDAKETKSKKGKYTALLAVLIVGSFIIPMAQYFWYVRDD 137          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: EJK77761.1 (hypothetical protein THAOC_00385 [Thalassiosira oceanica])

HSP 1 Score: 80.5 bits (197), Expect = 5.200e-12
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 0
Query:   48 NALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            NALA   L   AS  +  P + A  + +   +   F S++L  E   R+G+YGEY V+   Q +++A   FK+ +ET   K KY A++AVL++GS +IPMAQYFWYV+DD
Sbjct:   38 NALAGASL---ASALVVGPMADAVDMMA---DAPTFGSSSLVAERVKREGIYGEYEVDLGDQVYDDASSKFKSAKETKSKKGKYTALIAVLVVGSFIIPMAQYFWYVRDD 141          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: CBN73992.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9 bits (167), Expect = 1.600e-8
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 0
Query:    8 SSLLLLGLLSSALAFVPRQL------VRTPRQQQRVQG-RMQMALPQNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEG--TFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            SS L+LGL+  + AFV   +      V   R      G RM + +   A A++  L+ ++      P H  S  S   +  A+         E R+G+YG Y VE   +  E   G  TFK KEET E ++KY ++LAVLL GS VIPM QY+WY++DD
Sbjct:    7 SSGLVLGLVGCSQAFVTPPVTGLGGRVSAGRSAASASGPRMMLPMAPFAGAAVAHLIGSNP---INPEHLVSAKSQPTHLVAYK--------ETREGLYGPYEVEVQERAPETDFGISTFKKKEETEEGRDKYTSVLAVLLAGSFVIPMVQYWWYIRDD 154          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: GAX21772.1 (hypothetical protein FisN_31Lh061 [Fistulifera solaris])

HSP 1 Score: 68.6 bits (166), Expect = 2.000e-8
Identity = 38/103 (36.89%), Postives = 65/103 (63.11%), Query Frame = 0
Query:   47 QNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQ 150
            Q A A      T ++ + + P  A+++P       AF +  L+++V +R+G+YGEY ++   Q++++A  TFK+ +ET   K KY A+LA+L++GS +IPMAQ
Sbjct:   35 QKAAAGAFAAFTIASSVLTMPPAANAVP-------AFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQ 129          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: GAX10853.1 (hypothetical protein FisN_31Hh061 [Fistulifera solaris])

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-7
Identity = 37/103 (35.92%), Postives = 64/103 (62.14%), Query Frame = 0
Query:   47 QNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQ 150
            Q A A      T ++ + +    A+++P       AF +  L+++V +R+G+YGEY ++   Q++++A  TFK+ +ET   K KY A+LA+L++GS +IPMAQ
Sbjct:   34 QKAAAGAFAAFTIASSVLTMSPAANAVP-------AFPTQVLAEKV-IREGVYGEYEIDLPEQKYDDARSTFKSAKETKTKKGKYTALLAILIVGSFIIPMAQ 128          
BLAST of NO22G00510 vs. NCBI_GenBank
Match: XP_002289546.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED93083.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.9 bits (154), Expect = 5.000e-7
Identity = 53/148 (35.81%), Postives = 77/148 (52.03%), Query Frame = 0
Query:    3 VKVCFSSLLLLGLLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQY 151
            +K  F SL L+   SS  A  P    R  +    +Q   ++A+   A ASL     AS  +  P + A  +     N   F S+ L  E   R+G+Y EY V+   Q F++A  T+K+ +ET   K KY A++AVL++GS +IPMAQY
Sbjct:    1 MKTGFLSLALVA--SSVSALAPNAQPRATKPAFNIQ---KVAVNSMAAASL-----ASALVIGPMADAVDMMDIQPN---FGSSNLVAERVTREGLYREYDVDVGDQVFDDARSTYKSAKETKTKKGKYTALIAVLVVGSFIIPMAQY 135          
The following BLAST results are available for this feature:
BLAST of NO22G00510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
XP_005854700.11.300e-5075.32hypothetical protein NGA_0347602 [Nannochloropsis ... [more]
EWM21387.11.300e-5075.32hypothetical protein Naga_100215g6 [Nannochloropsi... [more]
XP_002176725.12.100e-1344.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK77761.15.200e-1242.73hypothetical protein THAOC_00385 [Thalassiosira oc... [more]
CBN73992.11.600e-837.11conserved unknown protein [Ectocarpus siliculosus][more]
GAX21772.12.000e-836.89hypothetical protein FisN_31Lh061 [Fistulifera sol... [more]
GAX10853.11.700e-735.92hypothetical protein FisN_31Hh061 [Fistulifera sol... [more]
XP_002289546.15.000e-735.81predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004228NSK004228Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00510.1NO22G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595416gene_7048Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100215g6gene9028Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00510.1NO22G00510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00510 ID=NO22G00510|Name=NO22G00510|organism=Nannochloropsis oceanica|type=gene|length=1342bp
ATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTC
CTCTGCCTTGGCATTTGTGCCGCGTCAACTCGgtacgtggttggctcatt
ctgaggggcgaaagaaagaagaaaggacttgtgcccgaggtgattgatgc
cttgatgcaaggcgtcagtagagggctgtggttagagtgccaagcgggtc
ggcatttgcgctctagaagctggcttcggtattgtggactggcagggaga
gagaggggatgaataatccggccagatatgggacggatcggagggataat
ggctgcaagagtttgaagacacgcgcgcactagcctacgaggattgatat
tttcatttccttccacccaattcatacacagTGCGCACGCCCCGGCAGCA
ACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTGG
gtaagtgacgtgtttgtaagggaaagaagagcaaggagggagggagataa
agagggcatgccagtctctctctgtttgatctttgcgtttgctttttccc
ctccttgcctgcttgtatggaggtacatgtgaacagcatcatcagattta
tgttttctttctttaccatccatttctccctcacagCATCCCTCGGCCTC
CTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCCCTCGCATGCGTCCTC
CCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCACGAGCGCTACCCTGA
GTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGCGAGTACACCGTGGAG
AAGACCGGGCAGCAGgtagggagggagggagggagggagggagagaggga
gggagagagggaatggaggagggaagaattgaaggggtattcttattttc
tgtttacttctgcatgtacactactctctcgtacgccctctgattgatca
attatatgctcacgttactgtctacacacacgtagTTTGAGAACGCCGAA
GGGACATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGT
TGCTATCCTGGCCGTGCTTTTGATCgtaagtatgcctacgaaaggacgga
aggaggaggacgcagggactaaggaagggtaaaatagaagcgagacggtg
tgtgtgggattagtcgtgtcgctaattcagtgtacacgtagtgtaacggc
tgcctcttttctctcatcccagcaagattatacctgcaccactcaagttc
tcctccctaccaactcatcacctttccatccactacagGGAAGTTGCGTC
ATTCCCATGGCTCAATATTTCTGGTACGTCAAGGACGACTAA
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protein sequence of NO22G00510.1

>NO22G00510.1-protein ID=NO22G00510.1-protein|Name=NO22G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MTVKVCFSSLLLLGLLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNAL
ASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYG
EYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQY
FWYVKDD*
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Synonyms
Publications