NO22G00510.1, NO22G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00510.1
Unique NameNO22G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length474
Alignment locationchr22:171123..172464 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:171123..172464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00510.1 vs.
Match: XP_005854700.1 (hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526]; EKU21656.1 hypothetical protein NGA_0347602 [Nannochloropsis gaditana CCMP526]; EWM21388.1 hypothetical protein Naga_100215g6 [Nannochloropsis gaditana])

HSP 1 Score: 208.8 bits (530), Expect = 1.300e-50
Identity = 119/158 (75.32%), Postives = 129/158 (81.65%), Query Frame = 0 
Query:    1 MTVKVCFSSLLLLGLL-SSALAFVPRQLVRTPRQQQRVQGRMQMALPQNALASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYGEYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQYFWYVKDD 158
            M+ K   SSLL+L  L +S  AFVPRQL RTP QQ R QGR+ MALP NA+ASLGLLLTASTGLY+P S     P  S +NQAFTS TLSKEVE RQGMY EYTVEKTGQQ+ENAEGTFKTK+ET  NKNKYVAILAVLL+GSCVIPMAQYFWYVKDD
Sbjct:    2 MSSKAFASSLLILSFLFASTWAFVPRQLTRTPLQQ-RGQGRLHMALPGNAMASLGLLLTASTGLYAPSS-----PPPSFHNQAFTSTTLSKEVESRQGMYKEYTVEKTGQQYENAEGTFKTKDETAGNKNKYVAILAVLLVGSCVIPMAQYFWYVKDD 153
The following BLAST results are available for this feature:
BLAST of NO22G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854700.11.300e-5075.32hypothetical protein NGA_0347602 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00510NO22G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00510.1NO22G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00510.1.cds1NO22G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00510.1.cds2NO22G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00510.1.cds3NO22G00510.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00510.1.cds4NO22G00510.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00510.1.cds5NO22G00510.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00510.1 ID=NO22G00510.1|Name=NO22G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTC
CTCTGCCTTGGCATTTGTGCCGCGTCAACTCGTGCGCACGCCCCGGCAGC
AACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTG
GCATCCCTCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCC
CTCGCATGCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCA
CGAGCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGC
GAGTACACCGTGGAGAAGACCGGGCAGCAGTTTGAGAACGCCGAAGGGAC
ATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGTTGCTA
TCCTGGCCGTGCTTTTGATCGGAAGTTGCGTCATTCCCATGGCTCAATAT
TTCTGGTACGTCAAGGACGACTAA
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protein sequence of NO22G00510.1

>NO22G00510.1-protein ID=NO22G00510.1-protein|Name=NO22G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MTVKVCFSSLLLLGLLSSALAFVPRQLVRTPRQQQRVQGRMQMALPQNAL
ASLGLLLTASTGLYSPPSHASSLPSFSLNNQAFTSATLSKEVEVRQGMYG
EYTVEKTGQQFENAEGTFKTKEETGENKNKYVAILAVLLIGSCVIPMAQY
FWYVKDD*
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mRNA from alignment at chr22:171123..172464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00510.1 ID=NO22G00510.1|Name=NO22G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1342bp|location=Sequence derived from alignment at chr22:171123..172464- (Nannochloropsis oceanica)
ATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTC
CTCTGCCTTGGCATTTGTGCCGCGTCAACTCGGTACGTGGTTGGCTCATT
CTGAGGGGCGAAAGAAAGAAGAAAGGACTTGTGCCCGAGGTGATTGATGC
CTTGATGCAAGGCGTCAGTAGAGGGCTGTGGTTAGAGTGCCAAGCGGGTC
GGCATTTGCGCTCTAGAAGCTGGCTTCGGTATTGTGGACTGGCAGGGAGA
GAGAGGGGATGAATAATCCGGCCAGATATGGGACGGATCGGAGGGATAAT
GGCTGCAAGAGTTTGAAGACACGCGCGCACTAGCCTACGAGGATTGATAT
TTTCATTTCCTTCCACCCAATTCATACACAGTGCGCACGCCCCGGCAGCA
ACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTGG
GTAAGTGACGTGTTTGTAAGGGAAAGAAGAGCAAGGAGGGAGGGAGATAA
AGAGGGCATGCCAGTCTCTCTCTGTTTGATCTTTGCGTTTGCTTTTTCCC
CTCCTTGCCTGCTTGTATGGAGGTACATGTGAACAGCATCATCAGATTTA
TGTTTTCTTTCTTTACCATCCATTTCTCCCTCACAGCATCCCTCGGCCTC
CTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCCCTCGCATGCGTCCTC
CCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCACGAGCGCTACCCTGA
GTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGCGAGTACACCGTGGAG
AAGACCGGGCAGCAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGA
GGGAGAGAGGGAATGGAGGAGGGAAGAATTGAAGGGGTATTCTTATTTTC
TGTTTACTTCTGCATGTACACTACTCTCTCGTACGCCCTCTGATTGATCA
ATTATATGCTCACGTTACTGTCTACACACACGTAGTTTGAGAACGCCGAA
GGGACATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGT
TGCTATCCTGGCCGTGCTTTTGATCGTAAGTATGCCTACGAAAGGACGGA
AGGAGGAGGACGCAGGGACTAAGGAAGGGTAAAATAGAAGCGAGACGGTG
TGTGTGGGATTAGTCGTGTCGCTAATTCAGTGTACACGTAGTGTAACGGC
TGCCTCTTTTCTCTCATCCCAGCAAGATTATACCTGCACCACTCAAGTTC
TCCTCCCTACCAACTCATCACCTTTCCATCCACTACAGGGAAGTTGCGTC
ATTCCCATGGCTCAATATTTCTGGTACGTCAAGGACGACTAA
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Coding sequence (CDS) from alignment at chr22:171123..172464-

>NO22G00510.1 ID=NO22G00510.1|Name=NO22G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at chr22:171123..172464- (Nannochloropsis oceanica)
ATGACGGTCAAGGTTTGCTTCTCGAGCTTGCTGCTCTTGGGTCTCCTCTC
CTCTGCCTTGGCATTTGTGCCGCGTCAACTCGTGCGCACGCCCCGGCAGC
AACAGCGCGTGCAGGGCCGCATGCAAATGGCCTTGCCTCAGAATGCCTTG
GCATCCCTCGGCCTCCTCCTCACTGCCTCGACGGGCCTCTACTCTCCCCC
CTCGCATGCGTCCTCCCTCCCTTCCTTCTCATTGAACAACCAGGCGTTCA
CGAGCGCTACCCTGAGTAAGGAGGTAGAGGTTCGTCAAGGCATGTATGGC
GAGTACACCGTGGAGAAGACCGGGCAGCAGTTTGAGAACGCCGAAGGGAC
ATTTAAGACGAAGGAGGAGACCGGGGAGAACAAGAACAAATACGTTGCTA
TCCTGGCCGTGCTTTTGATCGGAAGTTGCGTCATTCCCATGGCTCAATAT
TTCTGGTACGTCAAGGACGACTAA
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Synonyms
Publications