NO22G00470, NO22G00470 (gene) Nannochloropsis oceanica

Overview
NameNO22G00470
Unique NameNO22G00470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1486
Alignment locationchr22:162265..163750 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:162265..163750 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0033588Elongator holoenzyme complex
Vocabulary: Biological Process
TermDefinition
GO:0002098tRNA wobble uridine modification
Vocabulary: INTERPRO
TermDefinition
IPR006849IKI3
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004232NSK004232Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00470.1NO22G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|650332gene_7045Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00470.1NO22G00470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00470 ID=NO22G00470|Name=NO22G00470|organism=Nannochloropsis oceanica|type=gene|length=1486bp
ATGGCGGTGTGGGCGGAGGGCTTGAAGGAGGAAGGGCAGTGGCCGCAAGC
ACTGGTGGTGTTTTTGGCAATGGTCAGGAGGAAGGGAGCGAGGAAGGGAG
CGAGGGAAGGAGGGGCATGGTTGTTGAAGGCTGCGGAGTGTGCGAGGTCT
CTGGGTGATTGGCGGTTGGCATTGACGCTGGTCGCACGTGTGGAGGAGGA
GGAGGGAGGGAGGGAGGGAGGGAGGGGAGGAGGGGGGGGAGGAGGAACTG
AAAGCATTAGTGATGGGAAGGTGGCACTGTCCCTTTCCCGTCCTCCCCCT
CCTTCTCTTGTCCAGACCTGGGCTCGCCATTTTGTGGCGTTTTTTTTGGG
AGGGGTGGAAGGAGGGAGGGAGGGGAAAGAACGCCTGAAAGAGGGGGCGC
GCGTGTGTTTGGAGTACTTGAATGACGTGGAGGGAGGGGTGGCTGCGTTG
GTCAAAGCGGGAGAATGGAAGGAGGCGATGCGGGAGGCAAGGAAGGGAGG
GAGGAAGGATATGATCGAAACCGACGTCTGGGCTGGTGTGAAGGAGGGGG
AGGAGGAGATGAAGGGATGGATCAAGGGAGGGAAGGAGAGATGGAAGGAG
GGAGGGGAGGAGTTGAGAGTGTTGGCGGGGAAGATTGAGAGGGAGGAGAA
GGAGAAGGAGGAGGCGGAGAGGGAGAGGAGGCGGAGGGTGGGATTGGAGG
GAGGAGGAAAGGAGGGTGAGGAAGGGAGTGTGTTTTCGGCTATGACGAAT
GAGACGATGACCAGTGTCGTCACTGATGCCTCCTTCCGCTCAGGTACATC
CTCGCATGCCTCCTCCCACTCACGGCTAACCTGGACACTACCCGGAAGTA
TCAGAAGTAGCAGCAGCAGCAGCAGCAGGTACAACAGCAGTGGCACCAGC
ACCGTTGGCTTCGGCGTAGCGTCTCAAATGGGGGGGGAGGGCGGGGGGGA
GGGAGGGTTACAGGACCGCCAACAGCAGCAGCAACGGCGAACGAAGAAGG
CCAAGAGGAAGATCAAACTGACGTTACGGGAGGAGGAGGAGAGGCTGAGG
AATGCGTTGCTGGGTCGTCGGCCCGGGGAAAAAGAGATGGAAGAGGTGAG
GGACCTTGTGGATGCGCTGCTGTTACTAAATGACATGAAGGCAGCGGGCA
CATTGGTGTGTCTTCTGAGTGCGTATGTGCAGGAGATTGCGGCCCATCCT
CTTCCTCCTCCTCCACCCCCGGTGGGGGCCAAAACAGAGGTGGAGGGAGG
AAAGGAGGGGGAGGGAGTGGGGGAAGGCGGGGGGGAGGAAGGCTTGATGG
GCCTGTTTGACAAGATATTCGCGGCTTATCGTTTTTTAGAGGGGTAAAGA
AGGGAGGGAGCAAGGTGGAGGGAGGAAGGTGGGTAGAGGAAGCAGTGAAT
GAAATGAAACATGAAGTATTATGACGGGCAATACGACCAAATAAATTAAA
TTCTGGTGAATCCAAAGGAACCAAAAGAATGCCGAT
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protein sequence of NO22G00470.1

>NO22G00470.1-protein ID=NO22G00470.1-protein|Name=NO22G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=449bp
MAVWAEGLKEEGQWPQALVVFLAMVRRKGARKGAREGGAWLLKAAECARS
LGDWRLALTLVARVEEEEGGREGGRGGGGGGGTESISDGKVALSLSRPPP
PSLVQTWARHFVAFFLGGVEGGREGKERLKEGARVCLEYLNDVEGGVAAL
VKAGEWKEAMREARKGGRKDMIETDVWAGVKEGEEEMKGWIKGGKERWKE
GGEELRVLAGKIEREEKEKEEAERERRRRVGLEGGGKEGEEGSVFSAMTN
ETMTSVVTDASFRSGTSSHASSHSRLTWTLPGSIRSSSSSSSRYNSSGTS
TVGFGVASQMGGEGGGEGGLQDRQQQQQRRTKKAKRKIKLTLREEEERLR
NALLGRRPGEKEMEEVRDLVDALLLLNDMKAAGTLVCLLSAYVQEIAAHP
LPPPPPPVGAKTEVEGGKEGEGVGEGGGEEGLMGLFDKIFAAYRFLEG*
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Synonyms
Publications