NO22G00390, NO22G00390 (gene) Nannochloropsis oceanica

Overview
NameNO22G00390
Unique NameNO22G00390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1725
Alignment locationchr22:148694..150418 +

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Properties
Property NameValue
DescriptionRING 1A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:148694..150418 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: PON34838.1 (TNF receptor-associated factor [Parasponia andersonii])

HSP 1 Score: 94.0 bits (232), Expect = 9.100e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0 
Query:   48 PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERK 149
            P IR D++C IC  I+K+ + + ECLHRFC++C +K++R+ N          ECP CRT+  S+R L DDP +  L+ALLYP +   EE  ++++   E +
Sbjct:  100 PDIRRDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNN---------ECPACRTHCASRRSLRDDPNYDNLIALLYPDIEKYEEEFSQELAFHEEE 191
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: PON74847.1 (TNF receptor-associated factor [Trema orientalis])

HSP 1 Score: 94.0 bits (232), Expect = 9.100e-16
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 0 
Query:   48 PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERK 149
            P IR D++C IC  I+K+ + + ECLHRFC++C +K++R+ N          ECP CRT+  S+R L DDP +  L+ALLYP +   EE  ++++   E +
Sbjct:  101 PDIRRDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNN---------ECPACRTHCASRRSLRDDPNYDNLIALLYPDIEKYEEEFSQELAFHEEE 192
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: CBI21880.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 0 
Query:   48 PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE---NKDMQARERKYEQAL 154
            P IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP +   EE E   +++ Q R ++ + ++
Sbjct:  173 PDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFHEEEQTRNKQIQASI 272
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: XP_013465131.1 (putative E3 ubiquitin-protein ligase RING1a [Medicago truncatula] >KEH39166.1 RING zinc finger protein [Medicago truncatula])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 0 
Query:   50 IREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVA--ADEEAENKDMQARERKYEQALLRGQFK 160
            IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP++    +EE E ++ +    K  QA +   FK
Sbjct:  119 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFK 221
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: KEH39167.1 (RING zinc finger protein [Medicago truncatula])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 0 
Query:   50 IREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVA--ADEEAENKDMQARERKYEQALLRGQFK 160
            IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP++    +EE E ++ +    K  QA +   FK
Sbjct:  119 IRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFK 221
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: KHG01207.1 (Putative E3 ubiquitin-protein ligase RING1a -like protein [Gossypium arboreum])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:   43 LLIVPPSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE 139
            +L+  P IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP +   EE E
Sbjct:  105 VLVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEE 191
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: XP_012438175.1 (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Gossypium raimondii] >KJB50123.1 hypothetical protein B456_008G154600 [Gossypium raimondii])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:   43 LLIVPPSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE 139
            +L+  P IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP +   EE E
Sbjct:  105 VLVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEE 191
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: KJB50124.1 (hypothetical protein B456_008G154600 [Gossypium raimondii])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:   43 LLIVPPSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE 139
            +L+  P IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP +   EE E
Sbjct:  105 VLVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEE 191
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: OAE25718.1 (hypothetical protein AXG93_4368s1780 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 0 
Query:   39 PGDTLLIVPPSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENK--DMQARERKYEQALLRGQFK 160
            P + + +    IR++M+C IC  I+++ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP F  L+A LYP +   EE E    + + R  K  QA +   FK
Sbjct:  116 PNEYVTVCLSEIRKEMQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPKFDSLIAALYPDLEKYEEEEMALLEDETRRNKQIQASIAETFK 229
[Close]
BLAST of NO22G00390 vs. NCBI_GenBank
Match: XP_016722702.1 (PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Gossypium hirsutum])

HSP 1 Score: 93.2 bits (230), Expect = 1.600e-15
Identity = 42/96 (43.75%), Postives = 61/96 (63.54%), Query Frame = 0 
Query:   43 LLIVPPSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE 139
            +L+  P IR+D++C IC  I+K+ + + ECLHRFC++C +K++RL N          ECP CRT+  S+R L DDP +  L+A LYP +   EE E
Sbjct:  105 VLVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNN---------ECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEE 191
The following BLAST results are available for this feature:
BLAST of NO22G00390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PON34838.19.100e-1640.59TNF receptor-associated factor [Parasponia anderso... [more]
PON74847.19.100e-1640.59TNF receptor-associated factor [Trema orientalis][more]
CBI21880.31.600e-1539.45unnamed protein product, partial [Vitis vinifera][more]
XP_013465131.11.600e-1540.18putative E3 ubiquitin-protein ligase RING1a [Medic... [more]
KEH39167.11.600e-1540.18RING zinc finger protein [Medicago truncatula][more]
KHG01207.11.600e-1543.75Putative E3 ubiquitin-protein ligase RING1a -like ... [more]
XP_012438175.11.600e-1543.75PREDICTED: putative E3 ubiquitin-protein ligase RI... [more]
KJB50124.11.600e-1543.75hypothetical protein B456_008G154600 [Gossypium ra... [more]
OAE25718.11.600e-1538.21hypothetical protein AXG93_4368s1780 [Marchantia p... [more]
XP_016722702.11.600e-1543.75PREDICTED: putative E3 ubiquitin-protein ligase RI... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004239NSK004239Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00390.1NO22G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595375gene_7038Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00390.1NO22G00390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00390 ID=NO22G00390|Name=NO22G00390|organism=Nannochloropsis oceanica|type=gene|length=1725bp
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGgtgggtgtgaatggccaatggatgaaaaaatatcgtcaaccactggca
tgtgtccagactgacgacctcctcaccccactctccctcctctgtccctg
ccctttgccccctctccttccgcactctagTCCAGGCCATGGGAGACAAT
CTCCGTCCCTACGATATTGCACGCAGCGGTATCCCTGTCCTTCCGGGAGA
TACTCTATTGATCGTCCCGCCGTCCATTCGGGAGGACATGCGTTGCCGGA
TCTGCTTCGATATCGTCAAGGAGGCCAAGgtacgctcgaaaaacaggagg
aaaggaaagaaataaacgaggggacgaagtggctctgagagaaatattca
catgccgggtcatttatccgttttgacttttccctccttcccttcttccc
tccctctcttcctccctccgtcagGCCCTCCGTGAGTGCCTCCACCGCTT
TTGCAAGGACTGTGGGGAGAAGGCGTTGCGGCTGTCGAACGAAACAAAAA
CCATGAAAAGAACAGGAGCAGAGTGCCCACTCTGCCGTACCAACATCGGG
TCCAAGCGGGACTTGTAgtaagtagagagaagagaaagaagggatggagg
gagggaaaggaaccctcccctccctccctccctccctccctcccattcac
cactcccaccccctcactccattaaaccgccacagCGACGACCCCATTTT
TCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGGACGAAGAAG
CCGAGAACAAGGACATGCAAGCACGGGAACGGAAGgtcggaaggagagag
aaagagggggatggggagaaagggagggagggaggaaaaaggaaagataa
ggagggaggagacgagaaattgaaagaagaagtgaaaatgagaggtcagg
caactaaatagcgctacaaataatcaatacacttttctcactcctctctt
cactctaccgactcacgcatctccctccctccctccttctcaccctccct
ccctcctcagTACGAACAAGCCCTCCTCCGCGGGCAATTTAAGCATATCC
GGGGCTCCCCTCTCCCCTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTT
CCCCCCATTTTCTCTTCTGTTCCTTTCTCGCCCAGCAACAGCGGCACCAC
CCCTCCTCGTCTTCCCTACGCTCCTTCTCAGCCTCCCCCGGCTACTACTA
CTGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCC
ATTTCGTTGGGGAGAATAATGACTGCTGATTCGGCTGCGGCGGCGCAAGA
CGGAGAAAAAGGAGTAGAAGTAGAACAACAACAGCAGAAAATGGCGAGCA
TCGCGAGGAAACCGGAGgtaaggagtaagggaggtggggagggtgggagg
gagagagaggggaacatgatattctccaatctatccccctgtcgaggcac
ccacccacatatacacgccgcatcttaatcctccctccctccctccctcc
ctccctccctcccttccccaagTCCCTTTTTCAAATCTGCTACGTCCTCC
TGCCCTACGATCCCCCCCTTCTTCCACCGCGCCCTCCATCCCTCCTTCCT
TCGTTCTCCCACCTCTCCACGGCCCCAAGTCGTCTGCCCCCCGTCTGTGG
CGAGGTCCCGGGGATGCCACTATGA
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protein sequence of NO22G00390.1

>NO22G00390.1-protein ID=NO22G00390.1-protein|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVYRYNMAHLPLHAGRMVQAMGDNLRPYDIARSGIPVLPGDTLLIVPPSI
REDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAE
CPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERKYE
QALLRGQFKHIRGSPLPFSSSSLSTTPLPPIFSSVPFSPSNSGTTPPRLP
YAPSQPPPATTTAAAAAAAAAASVGDSAISLGRIMTADSAAAAQDGEKGV
EVEQQQQKMASIARKPESLFQICYVLLPYDPPLLPPRPPSLLPSFSHLST
APSRLPPVCGEVPGMPL*
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Synonyms
Publications