Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr22 genome chr22:148694..150418 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00390.1 vs.
Match: OEL23518.1 (putative E3 ubiquitin-protein ligase RING1a [Dichanthelium oligosanthes])
HSP 1 Score: 95.5 bits (236), Expect = 3.100e-16
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 0
Query: 40 GDTLLIVP-PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE---NKDMQARERKYEQALLRGQFK 160
GD L++V IR++++C IC I+++ +A+ ECLHRFC+DC +K++RL + R ECP CRT+ S+R L DDP + L+A LYP + EE E N+ R +K + L +++
Sbjct: 90 GDELMLVKLAEIRKEVQCPICLGIIQKTRAVMECLHRFCRDCIDKSMRLGYDA----RLNNECPKCRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFNEQEMTRNKKVSSSALAMKYR 209
The following BLAST results are available for this feature:
BLAST of NO22G00390.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
100 200 300 400 500 600 700 800 900 Expect = 3.10e-16 / Id = 38.71 Sequence OEL23518.1
Match Name E-value Identity Description
OEL23518.1 3.100e-16 38.71 putative E3 ubiquitin-protein ligase RING1a [Dicha... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT ATGA back to top protein sequence of NO22G00390.1
>NO22G00390.1-protein ID=NO22G00390.1-protein|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp MVYRYNMAHLPLHAGRMVQAMGDNLRPYDIARSGIPVLPGDTLLIVPPSI REDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAE CPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERKYE QALLRGQFKHIRGSPLPFSSSSLSTTPLPPIFSSVPFSPSNSGTTPPRLP YAPSQPPPATTTAAAAAAAAAASVGDSAISLGRIMTADSAAAAQDGEKGV EVEQQQQKMASIARKPESLFQICYVLLPYDPPLLPPRPPSLLPSFSHLST APSRLPPVCGEVPGMPL* back to top mRNA from alignment at chr22:148694..150418+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica)ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GG GTGGGTGTGAATGGCCAATGGATGAAAAAATATCGTCAACCACTGGCA
TGTGTCCAGACTGACGACCTCCTCACCCCACTCTCCCTCCTCTGTCCCTG
CCCTTTGCCCCCTCTCCTTCCGCACTCTAGTCCAGGCCATGGGAGACAAT
CTCCGTCCCTACGATATTGCACGCAGCGGTATCCCTGTCCTTCCGGGAGA
TACTCTATTGATCGTCCCGCCGTCCATTCGGGAGGACATGCGTTGCCGGA
TCTGCTTCGATATCGTCAAGGAGGCCAAG GTACGCTCGAAAAACAGGAGG
AAAGGAAAGAAATAAACGAGGGGACGAAGTGGCTCTGAGAGAAATATTCA
CATGCCGGGTCATTTATCCGTTTTGACTTTTCCCTCCTTCCCTTCTTCCC
TCCCTCTCTTCCTCCCTCCGTCAGGCCCTCCGTGAGTGCCTCCACCGCTT
TTGCAAGGACTGTGGGGAGAAGGCGTTGCGGCTGTCGAACGAAACAAAAA
CCATGAAAAGAACAGGAGCAGAGTGCCCACTCTGCCGTACCAACATCGGG
TCCAAGCGGGACTTGTA GTAAGTAGAGAGAAGAGAAAGAAGGGATGGAGG
GAGGGAAAGGAACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCATTCAC
CACTCCCACCCCCTCACTCCATTAAACCGCCACAGCGACGACCCCATTTT
TCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGGACGAAGAAG
CCGAGAACAAGGACATGCAAGCACGGGAACGGAAG GTCGGAAGGAGAGAG
AAAGAGGGGGATGGGGAGAAAGGGAGGGAGGGAGGAAAAAGGAAAGATAA
GGAGGGAGGAGACGAGAAATTGAAAGAAGAAGTGAAAATGAGAGGTCAGG
CAACTAAATAGCGCTACAAATAATCAATACACTTTTCTCACTCCTCTCTT
CACTCTACCGACTCACGCATCTCCCTCCCTCCCTCCTTCTCACCCTCCCT
CCCTCCTCAGTACGAACAAGCCCTCCTCCGCGGGCAATTTAAGCATATCC
GGGGCTCCCCTCTCCCCTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTT
CCCCCCATTTTCTCTTCTGTTCCTTTCTCGCCCAGCAACAGCGGCACCAC
CCCTCCTCGTCTTCCCTACGCTCCTTCTCAGCCTCCCCCGGCTACTACTA
CTGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCC
ATTTCGTTGGGGAGAATAATGACTGCTGATTCGGCTGCGGCGGCGCAAGA
CGGAGAAAAAGGAGTAGAAGTAGAACAACAACAGCAGAAAATGGCGAGCA
TCGCGAGGAAACCGGAG GTAAGGAGTAAGGGAGGTGGGGAGGGTGGGAGG
GAGAGAGAGGGGAACATGATATTCTCCAATCTATCCCCCTGTCGAGGCAC
CCACCCACATATACACGCCGCATCTTAATCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCCCCAAGTCCCTTTTTCAAATCTGCTACGTCCTCC
TGCCCTACGATCCCCCCCTTCTTCCACCGCGCCCTCCATCCCTCCTTCCT
TCGTTCTCCCACCTCTCCACGGCCCCAAGTCGTCTGCCCCCCGTCTGTGG
CGAGGTCCCGGGGATGCCACTATGA back to top Coding sequence (CDS) from alignment at chr22:148694..150418+
>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica) ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT ATGA back to top