NO22G00390.1, NO22G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00390.1
Unique NameNO22G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length954
Alignment locationchr22:148694..150418 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:148694..150418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO22G00390.1 vs.
Match: OEL23518.1 (putative E3 ubiquitin-protein ligase RING1a [Dichanthelium oligosanthes])

HSP 1 Score: 95.5 bits (236), Expect = 3.100e-16
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 0
Query:   40 GDTLLIVP-PSIREDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAECPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAE---NKDMQARERKYEQALLRGQFK 160
            GD L++V    IR++++C IC  I+++ +A+ ECLHRFC+DC +K++RL  +     R   ECP CRT+  S+R L DDP +  L+A LYP +   EE E   N+    R +K   + L  +++
Sbjct:   90 GDELMLVKLAEIRKEVQCPICLGIIQKTRAVMECLHRFCRDCIDKSMRLGYDA----RLNNECPKCRTHCASRRSLRDDPNYDALIAALYPDIDKYEEEELAFNEQEMTRNKKVSSSALAMKYR 209          
The following BLAST results are available for this feature:
BLAST of NO22G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
100200300400500600700800900SequenceOEL23518.1
Match NameE-valueIdentityDescription
OEL23518.13.100e-1638.71putative E3 ubiquitin-protein ligase RING1a [Dicha... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00390NO22G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00390.1NO22G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00390.1.cds1NO22G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds2NO22G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds3NO22G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds4NO22G00390.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds5NO22G00390.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00390.1.cds6NO22G00390.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=954bp
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG
GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT
CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA
GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG
CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG
TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA
CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG
ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA
CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC
CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT
CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC
TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC
TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA
TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA
GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA
GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC
TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG
GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT
ATGA
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protein sequence of NO22G00390.1

>NO22G00390.1-protein ID=NO22G00390.1-protein|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MVYRYNMAHLPLHAGRMVQAMGDNLRPYDIARSGIPVLPGDTLLIVPPSI
REDMRCRICFDIVKEAKALRECLHRFCKDCGEKALRLSNETKTMKRTGAE
CPLCRTNIGSKRDLYDDPIFQELVALLYPHVAADEEAENKDMQARERKYE
QALLRGQFKHIRGSPLPFSSSSLSTTPLPPIFSSVPFSPSNSGTTPPRLP
YAPSQPPPATTTAAAAAAAAAASVGDSAISLGRIMTADSAAAAQDGEKGV
EVEQQQQKMASIARKPESLFQICYVLLPYDPPLLPPRPPSLLPSFSHLST
APSRLPPVCGEVPGMPL*
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mRNA from alignment at chr22:148694..150418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica)
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT GGGTGGGTGTGAATGGCCAATGGATGAAAAAATATCGTCAACCACTGGCA TGTGTCCAGACTGACGACCTCCTCACCCCACTCTCCCTCCTCTGTCCCTG CCCTTTGCCCCCTCTCCTTCCGCACTCTAGTCCAGGCCATGGGAGACAAT CTCCGTCCCTACGATATTGCACGCAGCGGTATCCCTGTCCTTCCGGGAGA TACTCTATTGATCGTCCCGCCGTCCATTCGGGAGGACATGCGTTGCCGGA TCTGCTTCGATATCGTCAAGGAGGCCAAGGTACGCTCGAAAAACAGGAGG AAAGGAAAGAAATAAACGAGGGGACGAAGTGGCTCTGAGAGAAATATTCA CATGCCGGGTCATTTATCCGTTTTGACTTTTCCCTCCTTCCCTTCTTCCC TCCCTCTCTTCCTCCCTCCGTCAGGCCCTCCGTGAGTGCCTCCACCGCTT TTGCAAGGACTGTGGGGAGAAGGCGTTGCGGCTGTCGAACGAAACAAAAA CCATGAAAAGAACAGGAGCAGAGTGCCCACTCTGCCGTACCAACATCGGG TCCAAGCGGGACTTGTAGTAAGTAGAGAGAAGAGAAAGAAGGGATGGAGG GAGGGAAAGGAACCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCATTCAC CACTCCCACCCCCTCACTCCATTAAACCGCCACAGCGACGACCCCATTTT TCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGGACGAAGAAG CCGAGAACAAGGACATGCAAGCACGGGAACGGAAGGTCGGAAGGAGAGAG AAAGAGGGGGATGGGGAGAAAGGGAGGGAGGGAGGAAAAAGGAAAGATAA GGAGGGAGGAGACGAGAAATTGAAAGAAGAAGTGAAAATGAGAGGTCAGG CAACTAAATAGCGCTACAAATAATCAATACACTTTTCTCACTCCTCTCTT CACTCTACCGACTCACGCATCTCCCTCCCTCCCTCCTTCTCACCCTCCCT CCCTCCTCAGTACGAACAAGCCCTCCTCCGCGGGCAATTTAAGCATATCC GGGGCTCCCCTCTCCCCTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTT CCCCCCATTTTCTCTTCTGTTCCTTTCTCGCCCAGCAACAGCGGCACCAC CCCTCCTCGTCTTCCCTACGCTCCTTCTCAGCCTCCCCCGGCTACTACTA CTGCTGCGGCTGCTGCTGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCC ATTTCGTTGGGGAGAATAATGACTGCTGATTCGGCTGCGGCGGCGCAAGA CGGAGAAAAAGGAGTAGAAGTAGAACAACAACAGCAGAAAATGGCGAGCA TCGCGAGGAAACCGGAGGTAAGGAGTAAGGGAGGTGGGGAGGGTGGGAGG GAGAGAGAGGGGAACATGATATTCTCCAATCTATCCCCCTGTCGAGGCAC CCACCCACATATACACGCCGCATCTTAATCCTCCCTCCCTCCCTCCCTCC CTCCCTCCCTCCCTTCCCCAAGTCCCTTTTTCAAATCTGCTACGTCCTCC TGCCCTACGATCCCCCCCTTCTTCCACCGCGCCCTCCATCCCTCCTTCCT TCGTTCTCCCACCTCTCCACGGCCCCAAGTCGTCTGCCCCCCGTCTGTGG CGAGGTCCCGGGGATGCCACTATGA
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Coding sequence (CDS) from alignment at chr22:148694..150418+

>NO22G00390.1 ID=NO22G00390.1|Name=NO22G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at chr22:148694..150418+ (Nannochloropsis oceanica)
ATGGTGTACAGATACAACATGGCTCATTTACCACTCCATGCAGGGCGGAT
GGTCCAGGCCATGGGAGACAATCTCCGTCCCTACGATATTGCACGCAGCG
GTATCCCTGTCCTTCCGGGAGATACTCTATTGATCGTCCCGCCGTCCATT
CGGGAGGACATGCGTTGCCGGATCTGCTTCGATATCGTCAAGGAGGCCAA
GGCCCTCCGTGAGTGCCTCCACCGCTTTTGCAAGGACTGTGGGGAGAAGG
CGTTGCGGCTGTCGAACGAAACAAAAACCATGAAAAGAACAGGAGCAGAG
TGCCCACTCTGCCGTACCAACATCGGGTCCAAGCGGGACTTGTACGACGA
CCCCATTTTTCAAGAGCTGGTCGCCTTGCTCTACCCCCATGTGGCCGCGG
ACGAAGAAGCCGAGAACAAGGACATGCAAGCACGGGAACGGAAGTACGAA
CAAGCCCTCCTCCGCGGGCAATTTAAGCATATCCGGGGCTCCCCTCTCCC
CTTCTCCTCCTCCTCCCTCTCCACGACGCCCCTTCCCCCCATTTTCTCTT
CTGTTCCTTTCTCGCCCAGCAACAGCGGCACCACCCCTCCTCGTCTTCCC
TACGCTCCTTCTCAGCCTCCCCCGGCTACTACTACTGCTGCGGCTGCTGC
TGCTGCTGCTGCTGCTTCTGTTGGTGACAGTGCCATTTCGTTGGGGAGAA
TAATGACTGCTGATTCGGCTGCGGCGGCGCAAGACGGAGAAAAAGGAGTA
GAAGTAGAACAACAACAGCAGAAAATGGCGAGCATCGCGAGGAAACCGGA
GTCCCTTTTTCAAATCTGCTACGTCCTCCTGCCCTACGATCCCCCCCTTC
TTCCACCGCGCCCTCCATCCCTCCTTCCTTCGTTCTCCCACCTCTCCACG
GCCCCAAGTCGTCTGCCCCCCGTCTGTGGCGAGGTCCCGGGGATGCCACT
ATGA
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Synonyms
Publications