NO22G00380, NO22G00380 (gene) Nannochloropsis oceanica

Overview
NameNO22G00380
Unique NameNO22G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1698
Alignment locationchr22:146818..148515 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:146818..148515 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL033nonsL033Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00380.1NO22G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595372gene_7037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00380.1NO22G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00380 ID=NO22G00380|Name=NO22G00380|organism=Nannochloropsis oceanica|type=gene|length=1698bp
AAAACACACAGGGGGGAAGGCAAGGAGGCAGATTCTCGCTTTTAATCGGG
CAGGGAGGGACACGTCGTTGCAGCCCAGCCTCCTCACCCTTCGCTCCTTG
CTTCTTTCTCTCCACCAGAGGGGAGCAAGAGAAGCATCCCATCCCCCTCG
TCCCACCACACACACGCCGCTGTCGCCGCAGTTGTTGCTGTTACACGCTA
AACAGCAGCAGCAGCAGCTGCAGCAGCAGCCGTAGCGGAGGGCAACCATG
GCATCTCCGAAAAGAATGGCCTTGTCGATCCATGACTCGGTGCGACTGAC
AACAGTCAAGGGCGAGATAGTGCAAGGAAGTGTGCACGCGCTAGACGAGA
CCACAAGTACACTAGTGCTGCGTCTGGGAGgtaagtagggaagaagagag
aaaaggagggggggtgctgtccttggggcgtgagtgcatgcccctcaaaa
tttactctccctccttccctccctgtccatcaccctctccatcctctgtc
cacgccgcttgttgtctgacgacgggtaactgcgggatacccccacctcg
ctgcttgagctgcatcctcacctatcccccctccctcgcccttccatctt
ctttctgacacagATGACTCAACACTTTCCTCCACCTCCTCCGCCAACGC
TGCTGCTCGCGTCAGGGCGGGGAACGGTGGGGGTCACTTCCTTCGTTTCT
TGAGTGTCAAAAGCATCAGGACGATCGAGGTGGGAGGTGCCCACAGAGGG
AAAAAAAAGGGAGCAGCAGCAGGGGTGACTGGTGAAGAGTCCTCTTCCGC
CGCAACAGCTGCAGCTGCAGGGAGAGGGAGCGGGGGAGGGATCAACGACG
AAAAGCTGGCGAAGCTGGAGAAGGAGTCCAGGGGTAAGGCGGCGAGGGAA
ATGGCCAAGATCAATCCATCGGCAAGTCCCCAGGGGCAGATGAGCTTCGA
CCACATCAGCAAAATgtgcgcaaagggggagggagggaggcagggaggga
ggcaggaggaatttggttatggtacgggttatacatcggcgaatctggag
ggacaggaaagctttgaccacgcaagtaaaacgcatatgtcttcccttcc
tcttttcccttcccgtcttccttccttctaatccctttctttccttttcc
atgcactgaccctccctccctccctctttccctccctcgctcccttacgt
cagCTACTCAGACACGCGCTGGAGCGGTCAGAGCATCTTAATCATGGATC
AAGTGCGCATCGACCCCCCCTATCACAACAAGGGAGACATCAAGACACTC
GACGCTTCCGTGAAGAGTGAGTTTATCGATCGCCTGCTCACCATGATGGA
GAACGCGGATAAGAAGCTGGCAAGGAAGTAGGGAGGGAGGGAGGGACGGA
GGGGTGTGCTGCATATTCCTGGACATTGGCCACTAGGGCGATGAGTGATT
GAGCGGGAGGAAAAGGATGAAGCGAAGGAGATAGAGAGAGATCCAGATGG
AGTGTTGTATGTACATGTTCTGTTACTGTGGAGGATGGTTGAAATCGGGG
AGATGGAAGGGAGGAAGGGATGAAGGGAGGGGCGAGGGGAAGAAGAGGAG
GTGAGAGGTGTGGTGAGGCACATGTGGTGAAAGGAGAGCGCACCAATAAA
AGGCGGCATTTAACGAAACAAGAAAACAACAAAGCTGATCGCACGACC
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protein sequence of NO22G00380.1

>NO22G00380.1-protein ID=NO22G00380.1-protein|Name=NO22G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MASPKRMALSIHDSVRLTTVKGEIVQGSVHALDETTSTLVLRLGDDSTLS
STSSANAAARVRAGNGGGHFLRFLSVKSIRTIEVGGAHRGKKKGAAAGVT
GEESSSAATAAAAGRGSGGGINDEKLAKLEKESRGKAAREMAKINPSASP
QGQMSFDHISKIYSDTRWSGQSILIMDQVRIDPPYHNKGDIKTLDASVKS
EFIDRLLTMMENADKKLARK*
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Synonyms
Publications