NO22G00280, NO22G00280 (gene) Nannochloropsis oceanica

Overview
NameNO22G00280
Unique NameNO22G00280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1835
Alignment locationchr22:103596..105430 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:103596..105430 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00280.1NO22G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530517gene_7027Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00280.1NO22G00280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00280 ID=NO22G00280|Name=NO22G00280|organism=Nannochloropsis oceanica|type=gene|length=1835bp
ATGACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACG
CCATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCA
CGgtacgtcgacggatcacgtgaggatggaggcatgtgtagacccaaggg
agagggaggggagggaggaaaagcgcaagattcgagaacgcgcggcaagg
gcgcggaaaagagtaagacgggatgccatttgttgcttgcatgtttgttc
atctctgcatctggattgtgtcactgttgggcatgatgagtgcggcgttg
tgttgctcgacattccatgcctcacggcgaagggcaggtaagggggggga
gtggtggaggaggggaagggagggaaggtgggatgtgttcgaagaagcaa
ccaggcaccttgctactgttctacaggagcagaaatgtaagtgctcggtc
agttaccctatagtatggttcgtgaaatacatgaggagggagggaagaaa
agggcaagaaagacgagtgtgtgtagctgtcacgatgatatagcccgcca
agtctgaaaatttcaaggcctttgcaggtacattactccccctccccccc
tccttcttccctcggcatgtcttctttcctccactcactctcgtcatcct
agcactcggcgtttcgtttactcactgatctctcctcatgttgcttccct
attccgacaccaccagGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAG
AGGAGGAAGGTACCTTCGACTTCGACGACCTCCCTTCCCACGACTATCAC
GGACAACCTCAGCACCTTCCTGCTGCTGCATCAACATCGTCATCGCAACC
TCATGCTATCAGTGCTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCG
AAGCCGGAGTCGGAGCTGGAGCTGGAGCAGGATGCGTTTACCTACACCAG
CATCAGTATTACCCGCAGCAGCAGCATGCCATGATGGTAGCGGTACAACA
GCAACGGCAACAGCAGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACC
AACAAGTCCTCGCTCAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTG
CAGCGGCAACTCCACGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCT
TGCTTCCTCCTCCTCCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCG
ACTACCACTATGTCCAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGA
TGGTTGAGTCGTGCGGCTGCTCCTGAGGATGACGAGGAGGAAGAGGAGGA
ATGGAGAGAGGAAGAGGAGGACGACCAGATGATGTTCCACGACACGATGT
GTCATCATCAGCAGCAGCAGGTTTTCGGTTCCATGGACGGAGTGTGCTCG
TCGGGGAAAGGAGGGAAGGAGGAGGAGGAGGAGGAAGATGAGGATGTGGA
GTCAATGATGCAATCCGACCCCGAGGAGATCCAGGCCGCAACGGAAGCAG
CAGCTGCTGCAGCTCGACGAGAAGAAGCACGGCAACGCGCCCGCTCTGCC
TCGTTTCCGTGCACCTCGTCATCTTCCTCTGCCACCATCCCCCCTTCCTC
CTCCCTCCCTCCCTCCTCTTCGTCCTCCTGCCAACGACCCACGGCCTCCT
CCCCCCCTCGGCAGGCTGCACCTCCACCCCCTTGCCTCCCTCCTTCCCGT
CTTCCTCCTCGACCCCTGGCTTCGAAGGGTGGCTCGTGGGAGAACGCTAT
CGAATGGTGCGCGCGTTGGGCTCAGGTTCCTATGGAGAGGTGGCCGAGGC
CTGGGACTTGGAGGGAGGGAGGAGGGTGGCGGTGA
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protein sequence of NO22G00280.1

>NO22G00280.1-protein ID=NO22G00280.1-protein|Name=NO22G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MTTTLTSPLGALLKGRRHPFHHSQKEEDIHYAITEPSTEGEEEEEEEEGT
FDFDDLPSHDYHGQPQHLPAAASTSSSQPHAISAAGYLPNASSATEAGVG
AGAGAGCVYLHQHQYYPQQQHAMMVAVQQQRQQQQQQQQQFFYYHQQVLA
QRQAHARHQQHLQRQLHARQQCLSMPSSLASSSSPTPSSFPTKASDYHYV
QQQQQQQQQPRRWLSRAAAPEDDEEEEEEWREEEEDDQMMFHDTMCHHQQ
QQVFGSMDGVCSSGKGGKEEEEEEDEDVESMMQSDPEEIQAATEAAAAAA
RREEARQRARSASFPCTSSSSSATIPPSSSLPPSSSSSCQRPTASSPPRQ
AAPPPPCLPPSRLPPRPLASKGGSWENAIEWCARWAQVPMERWPRPGTWR
EGGGWR*
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Synonyms
Publications