NO22G00280.1, NO22G00280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00280.1
Unique NameNO22G00280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1221
Alignment locationchr22:103596..105430 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:103596..105430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO22G00280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00280NO22G00280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00280.1NO22G00280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00280.1.cds1NO22G00280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00280.1.cds2NO22G00280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00280.1 ID=NO22G00280.1|Name=NO22G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp
ATGACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACG
CCATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCA
CGGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAGAGGAGGAAGGTACC
TTCGACTTCGACGACCTCCCTTCCCACGACTATCACGGACAACCTCAGCA
CCTTCCTGCTGCTGCATCAACATCGTCATCGCAACCTCATGCTATCAGTG
CTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCGAAGCCGGAGTCGGA
GCTGGAGCTGGAGCAGGATGCGTTTACCTACACCAGCATCAGTATTACCC
GCAGCAGCAGCATGCCATGATGGTAGCGGTACAACAGCAACGGCAACAGC
AGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACCAACAAGTCCTCGCT
CAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTGCAGCGGCAACTCCA
CGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCTTGCTTCCTCCTCCT
CCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCGACTACCACTATGTC
CAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGATGGTTGAGTCGTGC
GGCTGCTCCTGAGGATGACGAGGAGGAAGAGGAGGAATGGAGAGAGGAAG
AGGAGGACGACCAGATGATGTTCCACGACACGATGTGTCATCATCAGCAG
CAGCAGGTTTTCGGTTCCATGGACGGAGTGTGCTCGTCGGGGAAAGGAGG
GAAGGAGGAGGAGGAGGAGGAAGATGAGGATGTGGAGTCAATGATGCAAT
CCGACCCCGAGGAGATCCAGGCCGCAACGGAAGCAGCAGCTGCTGCAGCT
CGACGAGAAGAAGCACGGCAACGCGCCCGCTCTGCCTCGTTTCCGTGCAC
CTCGTCATCTTCCTCTGCCACCATCCCCCCTTCCTCCTCCCTCCCTCCCT
CCTCTTCGTCCTCCTGCCAACGACCCACGGCCTCCTCCCCCCCTCGGCAG
GCTGCACCTCCACCCCCTTGCCTCCCTCCTTCCCGTCTTCCTCCTCGACC
CCTGGCTTCGAAGGGTGGCTCGTGGGAGAACGCTATCGAATGGTGCGCGC
GTTGGGCTCAGGTTCCTATGGAGAGGTGGCCGAGGCCTGGGACTTGGAGG
GAGGGAGGAGGGTGGCGGTGA
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protein sequence of NO22G00280.1

>NO22G00280.1-protein ID=NO22G00280.1-protein|Name=NO22G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MTTTLTSPLGALLKGRRHPFHHSQKEEDIHYAITEPSTEGEEEEEEEEGT
FDFDDLPSHDYHGQPQHLPAAASTSSSQPHAISAAGYLPNASSATEAGVG
AGAGAGCVYLHQHQYYPQQQHAMMVAVQQQRQQQQQQQQQFFYYHQQVLA
QRQAHARHQQHLQRQLHARQQCLSMPSSLASSSSPTPSSFPTKASDYHYV
QQQQQQQQQPRRWLSRAAAPEDDEEEEEEWREEEEDDQMMFHDTMCHHQQ
QQVFGSMDGVCSSGKGGKEEEEEEDEDVESMMQSDPEEIQAATEAAAAAA
RREEARQRARSASFPCTSSSSSATIPPSSSLPPSSSSSCQRPTASSPPRQ
AAPPPPCLPPSRLPPRPLASKGGSWENAIEWCARWAQVPMERWPRPGTWR
EGGGWR*
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mRNA from alignment at chr22:103596..105430+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00280.1 ID=NO22G00280.1|Name=NO22G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at chr22:103596..105430+ (Nannochloropsis oceanica)
ATGACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACG
CCATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCA
CGGTACGTCGACGGATCACGTGAGGATGGAGGCATGTGTAGACCCAAGGG
AGAGGGAGGGGAGGGAGGAAAAGCGCAAGATTCGAGAACGCGCGGCAAGG
GCGCGGAAAAGAGTAAGACGGGATGCCATTTGTTGCTTGCATGTTTGTTC
ATCTCTGCATCTGGATTGTGTCACTGTTGGGCATGATGAGTGCGGCGTTG
TGTTGCTCGACATTCCATGCCTCACGGCGAAGGGCAGGTAAGGGGGGGGA
GTGGTGGAGGAGGGGAAGGGAGGGAAGGTGGGATGTGTTCGAAGAAGCAA
CCAGGCACCTTGCTACTGTTCTACAGGAGCAGAAATGTAAGTGCTCGGTC
AGTTACCCTATAGTATGGTTCGTGAAATACATGAGGAGGGAGGGAAGAAA
AGGGCAAGAAAGACGAGTGTGTGTAGCTGTCACGATGATATAGCCCGCCA
AGTCTGAAAATTTCAAGGCCTTTGCAGGTACATTACTCCCCCTCCCCCCC
TCCTTCTTCCCTCGGCATGTCTTCTTTCCTCCACTCACTCTCGTCATCCT
AGCACTCGGCGTTTCGTTTACTCACTGATCTCTCCTCATGTTGCTTCCCT
ATTCCGACACCACCAGGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAG
AGGAGGAAGGTACCTTCGACTTCGACGACCTCCCTTCCCACGACTATCAC
GGACAACCTCAGCACCTTCCTGCTGCTGCATCAACATCGTCATCGCAACC
TCATGCTATCAGTGCTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCG
AAGCCGGAGTCGGAGCTGGAGCTGGAGCAGGATGCGTTTACCTACACCAG
CATCAGTATTACCCGCAGCAGCAGCATGCCATGATGGTAGCGGTACAACA
GCAACGGCAACAGCAGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACC
AACAAGTCCTCGCTCAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTG
CAGCGGCAACTCCACGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCT
TGCTTCCTCCTCCTCCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCG
ACTACCACTATGTCCAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGA
TGGTTGAGTCGTGCGGCTGCTCCTGAGGATGACGAGGAGGAAGAGGAGGA
ATGGAGAGAGGAAGAGGAGGACGACCAGATGATGTTCCACGACACGATGT
GTCATCATCAGCAGCAGCAGGTTTTCGGTTCCATGGACGGAGTGTGCTCG
TCGGGGAAAGGAGGGAAGGAGGAGGAGGAGGAGGAAGATGAGGATGTGGA
GTCAATGATGCAATCCGACCCCGAGGAGATCCAGGCCGCAACGGAAGCAG
CAGCTGCTGCAGCTCGACGAGAAGAAGCACGGCAACGCGCCCGCTCTGCC
TCGTTTCCGTGCACCTCGTCATCTTCCTCTGCCACCATCCCCCCTTCCTC
CTCCCTCCCTCCCTCCTCTTCGTCCTCCTGCCAACGACCCACGGCCTCCT
CCCCCCCTCGGCAGGCTGCACCTCCACCCCCTTGCCTCCCTCCTTCCCGT
CTTCCTCCTCGACCCCTGGCTTCGAAGGGTGGCTCGTGGGAGAACGCTAT
CGAATGGTGCGCGCGTTGGGCTCAGGTTCCTATGGAGAGGTGGCCGAGGC
CTGGGACTTGGAGGGAGGGAGGAGGGTGGCGGTGA
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Coding sequence (CDS) from alignment at chr22:103596..105430+

>NO22G00280.1 ID=NO22G00280.1|Name=NO22G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr22:103596..105430+ (Nannochloropsis oceanica)
ATGACCACGACGCTCACCTCGCCCTTGGGGGCGCTCCTTAAAGGCCGACG
CCATCCTTTTCACCACAGTCAGAAAGAGGAAGACATCCATTATGCCATCA
CGGAGCCTTCCACGGAGGGAGAGGAAGAAGAGGAAGAGGAGGAAGGTACC
TTCGACTTCGACGACCTCCCTTCCCACGACTATCACGGACAACCTCAGCA
CCTTCCTGCTGCTGCATCAACATCGTCATCGCAACCTCATGCTATCAGTG
CTGCCGGATACCTTCCGAACGCCTCTTCCGCCACCGAAGCCGGAGTCGGA
GCTGGAGCTGGAGCAGGATGCGTTTACCTACACCAGCATCAGTATTACCC
GCAGCAGCAGCATGCCATGATGGTAGCGGTACAACAGCAACGGCAACAGC
AGCAACAGCAGCAGCAGCAGTTCTTCTACTACCACCAACAAGTCCTCGCT
CAGAGGCAGGCGCACGCCCGTCACCAACAGCATCTGCAGCGGCAACTCCA
CGCACGGCAGCAATGCCTTTCCATGCCGTCCTCCCTTGCTTCCTCCTCCT
CCCCTACCCCTTCCTCGTTCCCTACGAAGGCATCCGACTACCACTATGTC
CAGCAGCAGCAGCAGCAGCAGCAGCAACCACGCCGATGGTTGAGTCGTGC
GGCTGCTCCTGAGGATGACGAGGAGGAAGAGGAGGAATGGAGAGAGGAAG
AGGAGGACGACCAGATGATGTTCCACGACACGATGTGTCATCATCAGCAG
CAGCAGGTTTTCGGTTCCATGGACGGAGTGTGCTCGTCGGGGAAAGGAGG
GAAGGAGGAGGAGGAGGAGGAAGATGAGGATGTGGAGTCAATGATGCAAT
CCGACCCCGAGGAGATCCAGGCCGCAACGGAAGCAGCAGCTGCTGCAGCT
CGACGAGAAGAAGCACGGCAACGCGCCCGCTCTGCCTCGTTTCCGTGCAC
CTCGTCATCTTCCTCTGCCACCATCCCCCCTTCCTCCTCCCTCCCTCCCT
CCTCTTCGTCCTCCTGCCAACGACCCACGGCCTCCTCCCCCCCTCGGCAG
GCTGCACCTCCACCCCCTTGCCTCCCTCCTTCCCGTCTTCCTCCTCGACC
CCTGGCTTCGAAGGGTGGCTCGTGGGAGAACGCTATCGAATGGTGCGCGC
GTTGGGCTCAGGTTCCTATGGAGAGGTGGCCGAGGCCTGGGACTTGGAGG
GAGGGAGGAGGGTGGCGGTGA
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Synonyms
Publications