NO22G00260, NO22G00260 (gene) Nannochloropsis oceanica

Overview
NameNO22G00260
Unique NameNO22G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr22:94479..95804 -

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Properties
Property NameValue
DescriptionU1 zinc finger protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:94479..95804 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf
IPR013087Znf_C2H2/integrase_DNA-bd
IPR022755Znf_C2H2_jaz
Homology
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: CCI42927.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 129.8 bits (325), Expect = 6.000e-27
Identity = 65/116 (56.03%), Postives = 80/116 (68.97%), Query Frame = 0 
Query:    4 GMCGKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            G   +KPR  AK K YKK+  T RR +DVDQIQD+L+ E +   PL    D+DLPG GQ+YC PCARHF D    D H+++KVHKRR+KDV QEQY+Q EA+  AG T+E   PAH
Sbjct:    3 GPTSRKPRSRAKVKGYKKSHSTKRRSRDVDQIQDDLKLESQQNKPLKFEIDEDLPGLGQYYCTPCARHFIDATTRDLHVRTKVHKRRLKDVRQEQYTQREADLGAGKTREEYVPAH 118
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: XP_009835162.1 (hypothetical protein H257_10348 [Aphanomyces astaci] >ETV75528.1 hypothetical protein H257_10348 [Aphanomyces astaci])

HSP 1 Score: 128.3 bits (321), Expect = 1.700e-26
Identity = 68/118 (57.63%), Postives = 80/118 (67.80%), Query Frame = 0 
Query:    8 KKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAHSAGLMV 126
            KK  H  KKK YK+A  T  R +D+DQIQD+L+KEV  GA +    D+DLPG GQFYC PC RHF   +  D HI SKVHKRR+KDVAQEQY+Q EAE AAG + E   PAH+    V
Sbjct:    8 KKGAH-CKKKGYKRAHATKSRSRDIDQIQDDLKKEVATGAKIAFEADEDLPGLGQFYCTPCGRHFITANARDVHIVSKVHKRRLKDVAQEQYTQNEAERAAGKSIEAYTPAHAPAAAV 124
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: CBJ30002.1 (U1 zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 126.7 bits (317), Expect = 5.100e-26
Identity = 62/90 (68.89%), Postives = 66/90 (73.33%), Query Frame = 0 
Query:   30 KDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            KDVDQIQDEL  E E G  +    DDDLPG GQFYC PCARHF D      HI+SK+HKRRMKDVAQEQY+Q EAE  AGMTKE  PPAH
Sbjct:   33 KDVDQIQDELMVEEEKGEEMVFEIDDDLPGQGQFYCTPCARHFTDLQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKETYPPAH 122
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: XP_008914463.1 (hypothetical protein PPTG_18252 [Phytophthora parasitica INRA-310] >ETI32226.1 hypothetical protein F443_20894 [Phytophthora parasitica P1569] >ETK72600.1 hypothetical protein L915_20306 [Phytophthora parasitica] >ETL26051.1 hypothetical protein L916_20173 [Phytophthora parasitica] >ETL79270.1 hypothetical protein L917_20044 [Phytophthora parasitica] >ETM32522.1 hypothetical protein L914_20070 [Phytophthora parasitica] >ETN00257.1 hypothetical protein PPTG_18252 [Phytophthora parasitica INRA-310] >ETO60957.1 hypothetical protein F444_20912 [Phytophthora parasitica P1976] >ETP02089.1 hypothetical protein F441_20754 [Phytophthora parasitica CJ01A1] >ETP30250.1 hypothetical protein F442_20689 [Phytophthora parasitica P10297] >KUF97296.1 ABC transporter G family member 31 [Phytophthora nicotianae] >KUG01508.1 Zinc finger protein 593 [Phytophthora nicotianae])

HSP 1 Score: 125.9 bits (315), Expect = 8.700e-26
Identity = 66/120 (55.00%), Postives = 78/120 (65.00%), Query Frame = 0 
Query:    1 MGTGMCGK-KPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            MGTG  G  + R  AKKKQYK+   T  R +D+DQIQD+LR E   G  +    D+DLPG GQFYC PC RHF D    D H+K+KVHKRR+KDVAQ+QY+Q EA   AG   E   PAH
Sbjct:    1 MGTGRSGSGRARAHAKKKQYKRGHATKNRARDIDQIQDDLRVEKLTGKSMAFEEDEDLPGLGQFYCTPCGRHFIDAKTRDVHLKTKVHKRRLKDVAQKQYTQNEAMQGAGKGVETYKPAH 120
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: XP_008864586.1 (hypothetical protein H310_02743 [Aphanomyces invadans] >ETW06511.1 hypothetical protein H310_02743 [Aphanomyces invadans])

HSP 1 Score: 125.9 bits (315), Expect = 8.700e-26
Identity = 66/112 (58.93%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:    8 KKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            KK  H  KKK YK+A  T  R +D+DQIQD+L+KE E G  +    D+DLPG GQ+YC PC RHF   +  D HI SKVHKRRMKDVAQEQY+Q EAE AAG + E   PAH
Sbjct:    8 KKGAH-CKKKGYKRAHATKSRSRDIDQIQDDLKKEEETGVKMTFELDEDLPGLGQYYCTPCGRHFITANARDVHIASKVHKRRMKDVAQEQYTQKEAERAAGKSIETYTPAH 118
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: OQS01339.1 (hypothetical protein ACHHYP_01367 [Achlya hypogyna])

HSP 1 Score: 125.2 bits (313), Expect = 1.500e-25
Identity = 66/111 (59.46%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:    7 GKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPP 118
            GKK  H  KKK YK+   T  R +D+DQIQD+L+KE   G P+    D+DLPG GQFYC PC RHF D      HIKSKVHKRR+KDVAQEQYSQ EAE AAG + E   P
Sbjct:    7 GKKGAH-CKKKGYKRGHATKSRSRDIDQIQDDLKKEAATGKPMAFEVDEDLPGLGQFYCTPCGRHFMDAVARAVHIKSKVHKRRLKDVAQEQYSQKEAERAAGKSVEAYVP 116
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: CCA18626.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 123.2 bits (308), Expect = 5.600e-25
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 0 
Query:    4 GMCGKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKE 114
            G   +KPR  AK K YKK+  T RR +DVDQIQD+L+ E +   PL    D+DLPG GQ+YC PCARHF D    + HI++KVHKRR+KDV QEQY+Q EA+  AG T+E
Sbjct:    3 GPTSRKPRSRAKVKGYKKSHSTKRRHRDVDQIQDDLKLETQQKKPLKFEIDEDLPGLGQYYCTPCARHFIDASTRELHIRTKVHKRRLKDVLQEQYTQREADLGAGKTRE 112
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: XP_008607211.1 (hypothetical protein SDRG_03356 [Saprolegnia diclina VS20] >EQC39150.1 hypothetical protein SDRG_03356 [Saprolegnia diclina VS20])

HSP 1 Score: 122.9 bits (307), Expect = 7.300e-25
Identity = 65/111 (58.56%), Postives = 75/111 (67.57%), Query Frame = 0 
Query:    7 GKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPP 118
            GKK  H  KKK YK+   T  R +D+DQIQD+L+KE   G  +    D+DLPG GQFYC PC RHF D+     HIKSKVHKRR+KDVAQEQYSQ EAE AAG + E   P
Sbjct:   22 GKKRAH-CKKKGYKRGHATKSRSRDIDQIQDDLKKEETTGTVMTFELDEDLPGLGQFYCTPCGRHFMDEVARTVHIKSKVHKRRLKDVAQEQYSQKEAERAAGKSVEAYVP 131
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: XP_024574990.1 (zinc finger protein [Plasmopara halstedii] >CEG38621.1 zinc finger protein [Plasmopara halstedii])

HSP 1 Score: 122.1 bits (305), Expect = 1.300e-24
Identity = 66/120 (55.00%), Postives = 77/120 (64.17%), Query Frame = 0 
Query:    1 MGTGMCGK-KPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            MGTG  G  + R  AKKKQYK+   T  R +D+DQIQD+LR E   G       D+DLPG GQFYC PC RHF D    D H+K+KVHKRR+KDVAQ+QY+Q EA  AAG   E    AH
Sbjct:    1 MGTGRPGAGRARAHAKKKQYKRGHATKNRARDIDQIQDDLRVEKMTGKTTNFEEDEDLPGLGQFYCTPCGRHFIDSKTRDVHLKTKVHKRRLKDVAQKQYTQNEANQAAGKGIETYKLAH 120
[Close]
BLAST of NO22G00260 vs. NCBI_GenBank
Match: OQS00107.1 (hypothetical protein THRCLA_21747 [Thraustotheca clavata])

HSP 1 Score: 118.6 bits (296), Expect = 1.400e-23
Identity = 64/113 (56.64%), Postives = 74/113 (65.49%), Query Frame = 0 
Query:    8 KKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAHS 121
            KK  H  KKK YK+   T  R +D+DQIQD+L+KE   G  +    D+DLPG GQFYC PC RHF D      H+KSKVHKRRMKDVAQEQYSQ EA+ AAG T E   P  +
Sbjct:    8 KKGAH-CKKKGYKRGHATKSRNRDIDQIQDDLKKEQLTGKSMTFQIDEDLPGLGQFYCTPCGRHFMDAVARAVHLKSKVHKRRMKDVAQEQYSQKEADRAAGKTIETYVPVRA 119
The following BLAST results are available for this feature:
BLAST of NO22G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCI42927.16.000e-2756.03unnamed protein product [Albugo candida][more]
XP_009835162.11.700e-2657.63hypothetical protein H257_10348 [Aphanomyces astac... [more]
CBJ30002.15.100e-2668.89U1 zinc finger protein [Ectocarpus siliculosus][more]
XP_008914463.18.700e-2655.00hypothetical protein PPTG_18252 [Phytophthora para... [more]
XP_008864586.18.700e-2658.93hypothetical protein H310_02743 [Aphanomyces invad... [more]
OQS01339.11.500e-2559.46hypothetical protein ACHHYP_01367 [Achlya hypogyna... [more]
CCA18626.15.600e-2556.36conserved hypothetical protein [Albugo laibachii N... [more]
XP_008607211.17.300e-2558.56hypothetical protein SDRG_03356 [Saprolegnia dicli... [more]
XP_024574990.11.300e-2455.00zinc finger protein [Plasmopara halstedii] >CEG386... [more]
OQS00107.11.400e-2356.64hypothetical protein THRCLA_21747 [Thraustotheca c... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR077ngnoR077Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00260.1NO22G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595313gene_7022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00260.1NO22G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00260 ID=NO22G00260|Name=NO22G00260|organism=Nannochloropsis oceanica|type=gene|length=1326bp
CAGATCTCCTTATCATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCAC
AGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCC
CAAAGACGTGGATCAGATTCAGgtaacttggaggaaggaggggaggcatg
ggagagtgagaggcgggcggggggtgatagggatgtgcgggcgggtgaaa
tagaacagatatgacggacggcagtttttagacgtcacaagcccgtagtc
ttacgttagcaggaaacgtagggacaggagggagggagggtggatggtgg
agaaacggaggtcgaggcccttaacccttacgctttttcagtcgaaggag
taaaaatcgacttgacgctcctggatccgacgaaggatagcatgagaggt
tacagggggaggctgctgcctctgcgtagactaagtattgcctttcctcc
tacccgcccctccttccctcccttcctcccttccttccgcttcaacagGA
CGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCCCTTCCCTACG
ACGATGATCTACCCGGTGGAGGTCAATTTTACTGCCGGCCTTGTGCGCGC
CACTTCGGAGATCAGCATTGCCTCGATCACCACATTAAGAGCAAGGTCCA
CAAGCGAAGgtaagccctcttcctcccacccatcctccctccctccctcc
ctctttccctccctccccccctttctcccactgaccttccctccctccag
GATGAAAGATGTTGCCCAAGAGCAGTATAGTCAAGGAGAGGCTGAGTATG
CAGCTGGAATGACGAAAGAGGTCCTACCACCCGCGCACTCGGCAGgtagg
gagggagggagggagggaggagtctggtctcgctaccgggataaccgtga
atgggccgcttcctggatagcctgcgggtacgaaaggagggagggagtga
gaggcaaggattcgtcagaagtcactgactttgataaattttcaacctaa
gttttgttgaaatttataataattaaattgtatctatgtcttcgcagtcg
tcagcgtcttaccataaaaaagccaatgactaaattgtctctacgtcttc
gcagtcgtcagtgtcttactatgaagaacaacaagaataatcacattttg
cactctttccatcgctcgacagGGCTGATGGTCGGCTAGGGGCCTGGATC
GAGACGCAGGGATGAAAGAGAGGGAGAAGAGAGCCAGGAGGAGGGGGAGA
AAGGGTAGGAAGAAGGCGGAGGAGAATGTGGTTGAAAATACATGGTCAGA
AATAGGGAGGGAGGGAGGGAGGGAGG
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protein sequence of NO22G00260.1

>NO22G00260.1-protein ID=NO22G00260.1-protein|Name=NO22G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MGTGMCGKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLP
LPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYS
QGEAEYAAGMTKEVLPPAHSAGLMVG*
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Synonyms
Publications