NO22G00260.1, NO22G00260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00260.1
Unique NameNO22G00260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length532
Alignment locationchr22:94479..95804 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:94479..95804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00260.1 vs.
Match: CBJ30002.1 (U1 zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 141.4 bits (355), Expect = 2.000e-30
Identity = 72/113 (63.72%), Postives = 77/113 (68.14%), Query Frame = 0 
Query:    7 GKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLPLPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYSQGEAEYAAGMTKEVLPPAH 120
            G K  H  K K+YKK   T  R KDVDQIQDEL  E E G  +    DDDLPG GQFYC PCARHF D      HI+SK+HKRRMKDVAQEQY+Q EAE  AGMTKE  PPAH
Sbjct:   10 GGKGGHKTKNKEYKKGHATKNRRKDVDQIQDELMVEEEKGEEMVFEIDDDLPGQGQFYCTPCARHFTDLQTKSTHIRSKLHKRRMKDVAQEQYTQAEAERGAGMTKETYPPAH 122
The following BLAST results are available for this feature:
BLAST of NO22G00260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30002.12.000e-3063.72U1 zinc finger protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00260NO22G00260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00260.1NO22G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00260.1.cds1NO22G00260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00260.1.cds2NO22G00260.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00260.1.cds3NO22G00260.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00260.1.cds4NO22G00260.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00260.1 ID=NO22G00260.1|Name=NO22G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
CAGATCTCCTTATCATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCAC
AGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCC
CAAAGACGTGGATCAGATTCAGGACGAGCTACGGAAAGAAGTTGAACTTG
GCGCCCCCCTCCCCCTTCCCTACGACGATGATCTACCCGGTGGAGGTCAA
TTTTACTGCCGGCCTTGTGCGCGCCACTTCGGAGATCAGCATTGCCTCGA
TCACCACATTAAGAGCAAGGTCCACAAGCGAAGGATGAAAGATGTTGCCC
AAGAGCAGTATAGTCAAGGAGAGGCTGAGTATGCAGCTGGAATGACGAAA
GAGGTCCTACCACCCGCGCACTCGGCAGGGCTGATGGTCGGCTAGGGGCC
TGGATCGAGACGCAGGGATGAAAGAGAGGGAGAAGAGAGCCAGGAGGAGG
GGGAGAAAGGGTAGGAAGAAGGCGGAGGAGAATGTGGTTGAAAATACATG
GTCAGAAATAGGGAGGGAGGGAGGGAGGGAGG
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protein sequence of NO22G00260.1

>NO22G00260.1-protein ID=NO22G00260.1-protein|Name=NO22G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MGTGMCGKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLP
LPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYS
QGEAEYAAGMTKEVLPPAHSAGLMVG*
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mRNA from alignment at chr22:94479..95804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00260.1 ID=NO22G00260.1|Name=NO22G00260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp|location=Sequence derived from alignment at chr22:94479..95804- (Nannochloropsis oceanica)
CAGATCTCCTTATCATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCAC
AGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCC
CAAAGACGTGGATCAGATTCAGGTAACTTGGAGGAAGGAGGGGAGGCATG
GGAGAGTGAGAGGCGGGCGGGGGGTGATAGGGATGTGCGGGCGGGTGAAA
TAGAACAGATATGACGGACGGCAGTTTTTAGACGTCACAAGCCCGTAGTC
TTACGTTAGCAGGAAACGTAGGGACAGGAGGGAGGGAGGGTGGATGGTGG
AGAAACGGAGGTCGAGGCCCTTAACCCTTACGCTTTTTCAGTCGAAGGAG
TAAAAATCGACTTGACGCTCCTGGATCCGACGAAGGATAGCATGAGAGGT
TACAGGGGGAGGCTGCTGCCTCTGCGTAGACTAAGTATTGCCTTTCCTCC
TACCCGCCCCTCCTTCCCTCCCTTCCTCCCTTCCTTCCGCTTCAACAGGA
CGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCCCTTCCCTACG
ACGATGATCTACCCGGTGGAGGTCAATTTTACTGCCGGCCTTGTGCGCGC
CACTTCGGAGATCAGCATTGCCTCGATCACCACATTAAGAGCAAGGTCCA
CAAGCGAAGGTAAGCCCTCTTCCTCCCACCCATCCTCCCTCCCTCCCTCC
CTCTTTCCCTCCCTCCCCCCCTTTCTCCCACTGACCTTCCCTCCCTCCAG
GATGAAAGATGTTGCCCAAGAGCAGTATAGTCAAGGAGAGGCTGAGTATG
CAGCTGGAATGACGAAAGAGGTCCTACCACCCGCGCACTCGGCAGGTAGG
GAGGGAGGGAGGGAGGGAGGAGTCTGGTCTCGCTACCGGGATAACCGTGA
ATGGGCCGCTTCCTGGATAGCCTGCGGGTACGAAAGGAGGGAGGGAGTGA
GAGGCAAGGATTCGTCAGAAGTCACTGACTTTGATAAATTTTCAACCTAA
GTTTTGTTGAAATTTATAATAATTAAATTGTATCTATGTCTTCGCAGTCG
TCAGCGTCTTACCATAAAAAAGCCAATGACTAAATTGTCTCTACGTCTTC
GCAGTCGTCAGTGTCTTACTATGAAGAACAACAAGAATAATCACATTTTG
CACTCTTTCCATCGCTCGACAGGGCTGATGGTCGGCTAGGGGCCTGGATC
GAGACGCAGGGATGAAAGAGAGGGAGAAGAGAGCCAGGAGGAGGGGGAGA
AAGGGTAGGAAGAAGGCGGAGGAGAATGTGGTTGAAAATACATGGTCAGA
AATAGGGAGGGAGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr22:94479..95804-

>NO22G00260.1 ID=NO22G00260.1|Name=NO22G00260.1|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at chr22:94479..95804- (Nannochloropsis oceanica)
ATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCACAGTGCCAAAAAGAA
GCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCCCAAAGACGTGGATC
AGATTCAGGACGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCC
CTTCCCTACGACGATGATCTACCCGGTGGAGGTCAATTTTACTGCCGGCC
TTGTGCGCGCCACTTCGGAGATCAGCATTGCCTCGATCACCACATTAAGA
GCAAGGTCCACAAGCGAAGGATGAAAGATGTTGCCCAAGAGCAGTATAGT
CAAGGAGAGGCTGAGTATGCAGCTGGAATGACGAAAGAGGTCCTACCACC
CGCGCACTCGGCAGGGCTGATGGTCGGCTAG
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Synonyms
Publications