NO22G00240, NO22G00240 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO22G00240
Unique Name	NO22G00240
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2065
Alignment location	chr22:89639..91703 -

Link to JBrowse

Properties


Property Name	Value
Description	Complex 1 LYR protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr22	genome	chr22:89639..91703 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

Homology

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: EWM21366.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 4.400e-41
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0

Query:    1 MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTRTR 98
            M PGLP  GPNREALRLYREILRTARRFYWPND GE WR+VLRREARKEFEQAR E+DPLI+ARLLVVGRDCVMQTQYKFDM Q KI+ENVDKTRTR
Sbjct:    1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTR 97

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: GBG25650.1 (WD repeat-containing protein pop2 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-16
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0

Query:   17 LYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTR 96
            LYR+ LR AR FYW +D+GE W  VL+R ARKEFE+AR E DP+I+AR+LVVGR CV   + KF+  +  I++ +D+TR
Sbjct: 1008 LYRDCLRMARCFYWADDNGEPWSVVLKRSARKEFEEARNETDPIIIARMLVVGRQCVEDMKRKFNETEDAIRKRIDRTR 1086

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_002468553.1 (uncharacterized protein LOC8085662 [Sorghum bicolor] >ABE77205.1 putative complex 1 protein, LYR family [Sorghum bicolor] >EER95551.1 hypothetical protein SORBI_3001G513100 [Sorghum bicolor])

HSP 1 Score: 89.7 bits (221), Expect = 5.500e-15
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQ 76
            REAL LYR+ILR AR F WP+D G  WR+VLR  AR+EFE+AR ERDP +VARLL+ GRD V Q
Sbjct:   73 REALALYRDILRAARLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQ 136

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_024393945.1 (uncharacterized protein LOC112291129 [Physcomitrella patens] >XP_024393946.1 uncharacterized protein LOC112291129 [Physcomitrella patens] >PNR41608.1 hypothetical protein PHYPA_019011 [Physcomitrella patens])

HSP 1 Score: 89.7 bits (221), Expect = 5.500e-15
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKI--KENVDKTRTRDKR 101
            REAL LYREILRT R F W N+HG  WRD+LR   R EFEQAR E DP ++ARLLVVGRD V     KF +   ++  KE    +  R  R
Sbjct:   46 REALALYREILRTTRLFTWTNEHGVPWRDLLRDSTRLEFEQARYETDPEVIARLLVVGRDAVQAAIEKFSVKAEELIKKETAPNSNPRPDR 136

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_006649359.1 (PREDICTED: uncharacterized protein LOC102714990 [Oryza brachyantha])

HSP 1 Score: 89.0 bits (219), Expect = 9.300e-15
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTR 96
            REAL LYR+ILR  R F WP+D G  WR+VLR  AR+EFE+AR ERDP +VARLL+ GRD V Q   +   A  ++ E  +  R
Sbjct:   71 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRVVEAEEAKR 154

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_002285899.1 (PREDICTED: uncharacterized protein LOC100247165 [Vitis vinifera])

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-14
Identity = 51/90 (56.67%), Postives = 59/90 (65.56%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDK-TRTRDKR 101
            REAL LYR+ILR  R F WP+  G  WRDVLR  ARKEFE+AR E+DP I+ RLL+ GRD V   Q   D    K KE V+K  R RD+R
Sbjct:   68 REALSLYRDILRATRFFMWPDSRGVLWRDVLRENARKEFEEARFEKDPEIITRLLIGGRDAV---QSALDKLVEKQKELVEKERRDRDRR 154

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_015630745.1 (PREDICTED: uncharacterized protein LOC4331544 [Oryza sativa Japonica Group] >ABF93858.1 Complex 1 protein containing protein, expressed [Oryza sativa Japonica Group] >BAF10809.1 Os03g0136600 [Oryza sativa Japonica Group] >EAY88452.1 hypothetical protein OsI_09917 [Oryza sativa Indica Group] >EAZ25500.1 hypothetical protein OsJ_09323 [Oryza sativa Japonica Group] >BAG88419.1 unnamed protein product [Oryza sativa Japonica Group] >BAS82186.1 Os03g0136600 [Oryza sativa Japonica Group])

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-14
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTR 96
            REAL LYR+ILR  R F WP+D G  WR+VLR  AR+EFE+AR ERDP +VARLL+ GRD V Q   +   A  ++ E  +  R
Sbjct:   72 REALGLYRDILRVTRLFEWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQALDRLAEASRRMVEAEEAKR 155

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_001013490.1 (complex 1 protein, LYR family protein [Tetrahymena thermophila SB210] >EAR93245.1 complex 1 protein, LYR family protein [Tetrahymena thermophila SB210])

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-14
Identity = 38/86 (44.19%), Postives = 61/86 (70.93%), Query Frame = 0

Query:   10 PNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTR 96
            PN+EAL+LYREIL+ +  FYW N  GE+W +++R+ AR+EFE  + E DPLI  ++++  R+ + +T+ K + A  K+ + VD+TR
Sbjct:   28 PNKEALKLYREILKFSNYFYWNNTKGENWGEIIRKSARREFEIGKSESDPLIAMKMIMTTRESLQKTKEKMNDAYFKLHQTVDETR 113

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: XP_004985792.1 (uncharacterized protein LOC101759733 [Setaria italica] >KQK92684.1 hypothetical protein SETIT_037858mg [Setaria italica])

HSP 1 Score: 87.8 bits (216), Expect = 2.100e-14
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQ 76
            REAL LYR+ILR  R F WP+D G  WR+VLR  AR+EFE+AR ERDP +VARLL+ GRD V Q
Sbjct:   70 REALGLYRDILRATRLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQ 133

[Close]

BLAST of NO22G00240 vs. NCBI_GenBank
Match: PAN51699.1 (hypothetical protein PAHAL_I00319 [Panicum hallii])

HSP 1 Score: 87.8 bits (216), Expect = 2.100e-14
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0

Query:   12 REALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQ 76
            REAL LYR+ILR  R F WP+D G  WR+VLR  AR+EFE+AR ERDP +VARLL+ GRD V Q
Sbjct:   69 REALGLYRDILRATRLFAWPDDRGVPWREVLRANARREFEEARGERDPEVVARLLIGGRDAVQQ 132

The following BLAST results are available for this feature:

BLAST of NO22G00240 vs. NCBI_GenBank

BLAST of NO22G00240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM21366.1	4.400e-41	87.63	Complex 1 LYR protein [Nannochloropsis gaditana]	[more]
GBG25650.1	1.300e-16	55.70	WD repeat-containing protein pop2 [Aurantiochytriu...	[more]
XP_002468553.1	5.500e-15	67.19	uncharacterized protein LOC8085662 [Sorghum bicolo...	[more]
XP_024393945.1	5.500e-15	53.85	uncharacterized protein LOC112291129 [Physcomitrel...	[more]
XP_006649359.1	9.300e-15	53.57	PREDICTED: uncharacterized protein LOC102714990 [O...	[more]
XP_002285899.1	1.200e-14	56.67	PREDICTED: uncharacterized protein LOC100247165 [V...	[more]
XP_015630745.1	1.600e-14	53.57	PREDICTED: uncharacterized protein LOC4331544 [Ory...	[more]
XP_001013490.1	1.600e-14	44.19	complex 1 protein, LYR family protein [Tetrahymena...	[more]
XP_004985792.1	2.100e-14	65.63	uncharacterized protein LOC101759733 [Setaria ital...	[more]
PAN51699.1	2.100e-14	65.63	hypothetical protein PAHAL_I00319 [Panicum hallii]	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
ncniR025	ncniR025	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR077	ngnoR077	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO22G00240.2	NO22G00240.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide
NO22G00240.1	NO22G00240.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595301	gene_7020	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100932g2	gene9054	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO22G00240.2	NO22G00240.2	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA
NO22G00240.1	NO22G00240.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence
protein sequence

gene sequence

>NO22G00240 ID=NO22G00240|Name=NO22G00240|organism=Nannochloropsis oceanica|type=gene|length=2065bp
GCCATGGCTGCCTTGGGAGGGAGGGAGGGAGAGAGGGTCAGGAAGGGAAG
AAGGGAGGGAGGGAGGGAAGGAGGGAAGAAGGGTTGGCAGGTCTTGTGAA
TCCCTCCTCATCTATCCTCCTTCGGCCCAAGCACCTTATTCTTTCTTCTT
CCCCTCCTCCCTCCCTCCCTCCTCACATGTCCAGACGTCTTGCCAATCGT
TCTATCATCGCTGCTCCCTCGTGCCTCAAACGGCGCTCTTCGGCGTCCGA
GACCCCATCTCGTCGGGAAGGGGAAGCTTTGTACAGCTGCCGGGTGGGAG
GAAGAGACGAGGGAGAGACGAAACGACGGGAGGGAGGGAGGGAGAGGGGA
GGAATGGGTGCATTCATCGATGACAGACCACAAGGACCCCCACAATCAAG
TCCTTGGACTCTCTCTATGTGCATATAACATACGCCCGTGCAGACTTAAT
GCACTCGTAACTACGTGCACGTACGTACGCACCTGCTCTAAGGACAAGAC
CCACTCTCCCTCCGTGTGATGGACGGGAACAAGACTTGGTGCCACACCTG
CAGCTACTCCTGCTGCCGAGTGATTGGGGACATGAGTAGGGTAGCGGGGT
GGGGGAAAGCCGGAAGTGGCGGCATGAGCGTGAGGCGGGACCATGCTCCA
TGCCTGCTGCTGCTGCTGCAGCTGCTGCTGTTGAGGCGGCAATGGTGGTG
GTGGGTGGTGGTATTGCAGCTGCTGGTGACTGCGGTGGTAAGGCTGCTGC
TGGTGTGTGTAATTTGAAGGGGGAGGATAGGAGGAAGGTCTTCTTGGCTG
CTGCTCCTCCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGGGAAT
GATGAGGGTGGTAGTGCGGGGGGGGTCCGCCGACCGGCATCATGATATGG
TGGCCGTGTCGTCGAATACTGGCAACTTGATCGATGCCTTCTTTTGGTCT
CTCTGAGCTTTGTGTTTGTGACGGGATGGAGATGTCTGAGTTACGTCTCG
AGGTAGAGCTCCTGAGAGGGGTGTGGGCATGGCCTTCGTCGTGCCCTGAA
ACCGACAGCGATGATGACTGTGTGCTGCAAACGGACAACCTCGCAAGCCC
TCTACGGCCTACGCTTTGTATATTGCACCTCACACATCCCAATCGTACAT
TCACAGCATCGCTAGCCTGAGGAGACCATAGACATTTGCGGACGAGGGCG
TCTCGAAACACTCGATTCGACCTCCTGCCCCCCCCGTCCCTCACCTCCTC
CCTCTGTCAGCAAGCTCACGCCCCACGCCTTCAACGCCCTGTCCATCCCT
CTCTTAGTATTATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAA
GCGCTACGACTGTACCGAGgtatgtcccctcatcttcaacctcctcactc
cctccctgactccctccctcctttactcactcatcagttttctcctcccc
cccttcctccccagAGATATTACGTACCGCCCGTCGTTTCTACTGGCCTA
ACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGAAG
GAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGGTT
GCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGGTGCGAA
TGAGGTGGAGAGGTAGAGGAAGAGAGAGGGTGGTGGACATGGAGGAAAGA
GGTATACAGAGTGCTTGTACATGGATTCAAGGAAGCACAACGTCTTACTT
ATTTTCTCTCCTCTTCCTCACCCTTCCTTGCTCATTTTCCCTCCCTAATT
CTCGCTCCCTTTTTATTTCCCCTTTCCACTCCCTCCCAGTTCGACATGGC
CCAGATGAAGATCAAGGAGAATGTGGACAAGACACGGACACGCGATAAGA
GATAAGGCATTGGCTTCCCAACTTGATACAGAAGATGCTACGTGAAAATA
AACTGATTCAATAAGTCTCTCTTTTTTTAGCAGCAAAGGTTGACGCGTGT
ACAAGAAGGAGGATTTTGTACATAGAAAGAACGGAGAAAGTGACGTTCAT
AACGGCTTGAGTCCA

protein sequence of NO22G00240.2

>NO22G00240.2-protein ID=NO22G00240.2-protein|Name=NO22G00240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEF
EQAREERDPLIVARLLVVGRDCVMQTQYKVRMRWRGRGRERVVDMEERGI
QSACTWIQGSTTSYLFSLLFLTLPCSFSLPNSRSLFISPFHSLPVRHGPD
EDQGECGQDTDTR*

protein sequence of NO22G00240.1

>NO22G00240.1-protein ID=NO22G00240.1-protein|Name=NO22G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEF
EQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTRTRDKR
*

Synonyms

Publications