NO22G00240.1, NO22G00240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00240.1
Unique NameNO22G00240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1774
Alignment locationchr22:89639..91703 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:89639..91703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G00240.1 vs.
Match: EWM21366.1 (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 176.4 bits (446), Expect = 4.400e-41
Identity = 85/97 (87.63%), Postives = 89/97 (91.75%), Query Frame = 0 
Query:    1 MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEFEQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTRTR 98
            M PGLP  GPNREALRLYREILRTARRFYWPND GE WR+VLRREARKEFEQAR E+DPLI+ARLLVVGRDCVMQTQYKFDM Q KI+ENVDKTRTR
Sbjct:    1 MSPGLPTIGPNREALRLYREILRTARRFYWPNDEGEPWREVLRREARKEFEQARAEKDPLIIARLLVVGRDCVMQTQYKFDMTQQKIRENVDKTRTR 97
The following BLAST results are available for this feature:
BLAST of NO22G00240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21366.14.400e-4187.63Complex 1 LYR protein [Nannochloropsis gaditana][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00240NO22G00240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00240.1NO22G00240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00240.1.cds1NO22G00240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00240.1.cds2NO22G00240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00240.1.cds3NO22G00240.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00240.1 ID=NO22G00240.1|Name=NO22G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp
GCCATGGCTGCCTTGGGAGGGAGGGAGGGAGAGAGGGTCAGGAAGGGAAG
AAGGGAGGGAGGGAGGGAAGGAGGGAAGAAGGGTTGGCAGGTCTTGTGAA
TCCCTCCTCATCTATCCTCCTTCGGCCCAAGCACCTTATTCTTTCTTCTT
CCCCTCCTCCCTCCCTCCCTCCTCACATGTCCAGACGTCTTGCCAATCGT
TCTATCATCGCTGCTCCCTCGTGCCTCAAACGGCGCTCTTCGGCGTCCGA
GACCCCATCTCGTCGGGAAGGGGAAGCTTTGTACAGCTGCCGGGTGGGAG
GAAGAGACGAGGGAGAGACGAAACGACGGGAGGGAGGGAGGGAGAGGGGA
GGAATGGGTGCATTCATCGATGACAGACCACAAGGACCCCCACAATCAAG
TCCTTGGACTCTCTCTATGTGCATATAACATACGCCCGTGCAGACTTAAT
GCACTCGTAACTACGTGCACGTACGTACGCACCTGCTCTAAGGACAAGAC
CCACTCTCCCTCCGTGTGATGGACGGGAACAAGACTTGGTGCCACACCTG
CAGCTACTCCTGCTGCCGAGTGATTGGGGACATGAGTAGGGTAGCGGGGT
GGGGGAAAGCCGGAAGTGGCGGCATGAGCGTGAGGCGGGACCATGCTCCA
TGCCTGCTGCTGCTGCTGCAGCTGCTGCTGTTGAGGCGGCAATGGTGGTG
GTGGGTGGTGGTATTGCAGCTGCTGGTGACTGCGGTGGTAAGGCTGCTGC
TGGTGTGTGTAATTTGAAGGGGGAGGATAGGAGGAAGGTCTTCTTGGCTG
CTGCTCCTCCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGGGAAT
GATGAGGGTGGTAGTGCGGGGGGGGTCCGCCGACCGGCATCATGATATGG
TGGCCGTGTCGTCGAATACTGGCAACTTGATCGATGCCTTCTTTTGGTCT
CTCTGAGCTTTGTGTTTGTGACGGGATGGAGATGTCTGAGTTACGTCTCG
AGGTAGAGCTCCTGAGAGGGGTGTGGGCATGGCCTTCGTCGTGCCCTGAA
ACCGACAGCGATGATGACTGTGTGCTGCAAACGGACAACCTCGCAAGCCC
TCTACGGCCTACGCTTTGTATATTGCACCTCACACATCCCAATCGTACAT
TCACAGCATCGCTAGCCTGAGGAGACCATAGACATTTGCGGACGAGGGCG
TCTCGAAACACTCGATTCGACCTCCTGCCCCCCCCGTCCCTCACCTCCTC
CCTCTGTCAGCAAGCTCACGCCCCACGCCTTCAACGCCCTGTCCATCCCT
CTCTTAGTATTATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAA
GCGCTACGACTGTACCGAGAGATATTACGTACCGCCCGTCGTTTCTACTG
GCCTAACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCC
GGAAGGAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCG
AGGTTGCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGTT
CGACATGGCCCAGATGAAGATCAAGGAGAATGTGGACAAGACACGGACAC
GCGATAAGAGATAAGGCATTGGCTTCCCAACTTGATACAGAAGATGCTAC
GTGAAAATAAACTGATTCAATAAGTCTCTCTTTTTTTAGCAGCAAAGGTT
GACGCGTGTACAAGAAGGAGGATTTTGTACATAGAAAGAACGGAGAAAGT
GACGTTCATAACGGCTTGAGTCCA
back to top

protein sequence of NO22G00240.1

>NO22G00240.1-protein ID=NO22G00240.1-protein|Name=NO22G00240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEF
EQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTRTRDKR
*
back to top

mRNA from alignment at chr22:89639..91703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00240.1 ID=NO22G00240.1|Name=NO22G00240.1|organism=Nannochloropsis oceanica|type=mRNA|length=2065bp|location=Sequence derived from alignment at chr22:89639..91703- (Nannochloropsis oceanica)
GCCATGGCTGCCTTGGGAGGGAGGGAGGGAGAGAGGGTCAGGAAGGGAAG
AAGGGAGGGAGGGAGGGAAGGAGGGAAGAAGGGTTGGCAGGTCTTGTGAA
TCCCTCCTCATCTATCCTCCTTCGGCCCAAGCACCTTATTCTTTCTTCTT
CCCCTCCTCCCTCCCTCCCTCCTCACATGTCCAGACGTCTTGCCAATCGT
TCTATCATCGCTGCTCCCTCGTGCCTCAAACGGCGCTCTTCGGCGTCCGA
GACCCCATCTCGTCGGGAAGGGGAAGCTTTGTACAGCTGCCGGGTGGGAG
GAAGAGACGAGGGAGAGACGAAACGACGGGAGGGAGGGAGGGAGAGGGGA
GGAATGGGTGCATTCATCGATGACAGACCACAAGGACCCCCACAATCAAG
TCCTTGGACTCTCTCTATGTGCATATAACATACGCCCGTGCAGACTTAAT
GCACTCGTAACTACGTGCACGTACGTACGCACCTGCTCTAAGGACAAGAC
CCACTCTCCCTCCGTGTGATGGACGGGAACAAGACTTGGTGCCACACCTG
CAGCTACTCCTGCTGCCGAGTGATTGGGGACATGAGTAGGGTAGCGGGGT
GGGGGAAAGCCGGAAGTGGCGGCATGAGCGTGAGGCGGGACCATGCTCCA
TGCCTGCTGCTGCTGCTGCAGCTGCTGCTGTTGAGGCGGCAATGGTGGTG
GTGGGTGGTGGTATTGCAGCTGCTGGTGACTGCGGTGGTAAGGCTGCTGC
TGGTGTGTGTAATTTGAAGGGGGAGGATAGGAGGAAGGTCTTCTTGGCTG
CTGCTCCTCCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGGGAAT
GATGAGGGTGGTAGTGCGGGGGGGGTCCGCCGACCGGCATCATGATATGG
TGGCCGTGTCGTCGAATACTGGCAACTTGATCGATGCCTTCTTTTGGTCT
CTCTGAGCTTTGTGTTTGTGACGGGATGGAGATGTCTGAGTTACGTCTCG
AGGTAGAGCTCCTGAGAGGGGTGTGGGCATGGCCTTCGTCGTGCCCTGAA
ACCGACAGCGATGATGACTGTGTGCTGCAAACGGACAACCTCGCAAGCCC
TCTACGGCCTACGCTTTGTATATTGCACCTCACACATCCCAATCGTACAT
TCACAGCATCGCTAGCCTGAGGAGACCATAGACATTTGCGGACGAGGGCG
TCTCGAAACACTCGATTCGACCTCCTGCCCCCCCCGTCCCTCACCTCCTC
CCTCTGTCAGCAAGCTCACGCCCCACGCCTTCAACGCCCTGTCCATCCCT
CTCTTAGTATTATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAA
GCGCTACGACTGTACCGAGGTATGTCCCCTCATCTTCAACCTCCTCACTC
CCTCCCTGACTCCCTCCCTCCTTTACTCACTCATCAGTTTTCTCCTCCCC
CCCTTCCTCCCCAGAGATATTACGTACCGCCCGTCGTTTCTACTGGCCTA
ACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGAAG
GAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGGTT
GCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGGTGCGAA
TGAGGTGGAGAGGTAGAGGAAGAGAGAGGGTGGTGGACATGGAGGAAAGA
GGTATACAGAGTGCTTGTACATGGATTCAAGGAAGCACAACGTCTTACTT
ATTTTCTCTCCTCTTCCTCACCCTTCCTTGCTCATTTTCCCTCCCTAATT
CTCGCTCCCTTTTTATTTCCCCTTTCCACTCCCTCCCAGTTCGACATGGC
CCAGATGAAGATCAAGGAGAATGTGGACAAGACACGGACACGCGATAAGA
GATAAGGCATTGGCTTCCCAACTTGATACAGAAGATGCTACGTGAAAATA
AACTGATTCAATAAGTCTCTCTTTTTTTAGCAGCAAAGGTTGACGCGTGT
ACAAGAAGGAGGATTTTGTACATAGAAAGAACGGAGAAAGTGACGTTCAT
AACGGCTTGAGTCCA
back to top

Coding sequence (CDS) from alignment at chr22:89639..91703-

>NO22G00240.1 ID=NO22G00240.1|Name=NO22G00240.1|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at chr22:89639..91703- (Nannochloropsis oceanica)
ATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCTACGACT
GTACCGAGAGATATTACGTACCGCCCGTCGTTTCTACTGGCCTAACGACC
ACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGAAGGAATTT
GAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGGTTGCTGGT
GGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGTTCGACATGGCCC
AGATGAAGATCAAGGAGAATGTGGACAAGACACGGACACGCGATAAGAGA
TAA
back to top
Synonyms
Publications