NO22G00200, NO22G00200 (gene) Nannochloropsis oceanica

Overview
NameNO22G00200
Unique NameNO22G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1523
Alignment locationchr22:83881..85403 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:83881..85403 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO22G00200 vs. NCBI_GenBank
Match: EWM27380.1 (hypothetical protein Naga_100438g1 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:    5 ELRQRSRGYVEL-GHDDGMGMGEEDDSFYHGAAAGDNVGRGLGLSDAPLGGGGISSSQYNDGSDDDFSTSGPQGPVGKWARFRKTSRERLL 95
            E R+   GYVEL G ++ +  GE+ + FYH   AG+  G+ L L  APLGGGG  +S Y DGSDDDFSTSGPQGPVG WARFRKTSRER L
Sbjct:   63 EGRRVFAGYVELGGSEEAVSAGEDGEGFYHSGYAGEAAGKSLRLGTAPLGGGGPYTSHYQDGSDDDFSTSGPQGPVGTWARFRKTSRERCL 153
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BLAST of NO22G00200 vs. NCBI_GenBank
Match: EWM19917.1 (hypothetical protein Naga_103097g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:   99 PLRRSISTTAHHPSAPRVYQFVFFYSLWAVCFLSPVAHMLLNESPYIHVKKGELDKRAMGWVVVE 164
            P+RRSIS +++HP  PR+YQ    +S  AV FLS VAH+LL  SP+++ K    DK A+GWVVVE
Sbjct:   26 PVRRSISASSNHPVVPRIYQLCCLFSFIAVVFLSSVAHILLANSPFLNFKG---DKVAIGWVVVE 87
The following BLAST results are available for this feature:
BLAST of NO22G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27380.11.700e-1961.54hypothetical protein Naga_100438g1 [Nannochloropsi... [more]
EWM19917.11.300e-853.85hypothetical protein Naga_103097g1, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00200.1NO22G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631590gene_7017Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00200.1NO22G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00200 ID=NO22G00200|Name=NO22G00200|organism=Nannochloropsis oceanica|type=gene|length=1523bp
ATGCCAATAATAGAACTTAGGCAACGTTCAAGgtagggtcgaaagggaaa
gtgaagtgagggagggagggcgggcgggaggataaaagatgcgtagacgc
ggactgttcgatgactgatgtcgcttcctcctgttcacttcctccttccc
ccccccccttcctcttgcagGGGCTATGTTGAGCTTGGGCACGATGACGG
GATGGGGATGGGGGAAGAAGACGACTCCTTCTACCATGGAGCGGCCGCGG
GGGACAACGTCGGAAGGGGCCTGGGCTTGAGCGATGgtacacacgcgccc
atctcttgcttttcttttcccccccctaccctccctcccatccctccctt
ctctgcggtatcattcattctctctaccacagtcagatggtctcactcct
tcccttcctccctccttctctccctccctcccgctcacagCGCCCCTGGG
GGGTGGCGGCATCAGCAGTAGCCAATATAACGATGGGAGCGACGACGATT
TCTCTACTAGCGGTCCTCAAGGCCCTGTTGGAAAATGGGCTCGTTTCCGC
AAGACCAGCAGAGAACGgtatgtcaccccccgatctccctctttccctca
ctccctctttccctccctcctcggagctaatgcgatttctctcccccggt
cccttcctccgtcttttcctttcttcctctctcctttctttccagGCTGC
TGCGTGGGTTCTCCCCTCTGCGTCGATCCATCAGCACGACTGCCCACCAT
CCCTCTGCTCCCCGAGTCTATCAGTTCGTCTTCTTCTACTCTCTCTGGGC
AGTGTGTTTTCTCTCCCCTGTGGCCCATATGCTCCTCAACGAGTCGCCCT
ACATCCACGTGAAGAAGGGGGAGCTCGATAAGCGGGCCATGGGTTGGGTA
GTGGTCGAGgtagggagggagcgagggagggagggaggaaggaagagggg
atcgggcccaactcctcctttttccgccatcctttttttcttacttctca
gtctatcctctcgccctcctttcctcctcccctccctcctcccctcctta
cctctctagGCTGTCATCTTGTTCGCCTGCTTGCTCCTTTTCTCAGGCTA
CCTCTGGTACAGACACGCCCGTAGAAAAGCAATGgtaagcctcctttcct
ctctcccttcctccctccctccctccctcccttcctccctccccctgtcc
ctcccttaatcccgatcatttctgctgtttatagccacctcccaccttgc
tgccttccaaaccctccctcctctcctccctccctccctccctccctccc
tctctttcgctccacaaacaaagcgtctcctcctctaacccttcccacat
ccatccctccctccctccttccctttcttcctcccttcctacagCTTGGG
AGTCTCACCTACTCCCGACTGGGTGACGGCAGAGGACTGCTGGACTTTGG
AGGGGGAGGGAGGGAGGGAGGGAGGGGTATTTTCCGTCGATCCTCCTACC
ACGACGACCCCTTTTTGAGATAG
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protein sequence of NO22G00200.1

>NO22G00200.1-protein ID=NO22G00200.1-protein|Name=NO22G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MPIIELRQRSRGYVELGHDDGMGMGEEDDSFYHGAAAGDNVGRGLGLSDA
PLGGGGISSSQYNDGSDDDFSTSGPQGPVGKWARFRKTSRERLLRGFSPL
RRSISTTAHHPSAPRVYQFVFFYSLWAVCFLSPVAHMLLNESPYIHVKKG
ELDKRAMGWVVVEAVILFACLLLFSGYLWYRHARRKAMLGSLTYSRLGDG
RGLLDFGGGGREGGRGIFRRSSYHDDPFLR*
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Synonyms
Publications