NO22G00200.1, NO22G00200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00200.1
Unique NameNO22G00200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr22:83881..85403 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:83881..85403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00200.1 vs.
Match: EWM27380.1 (hypothetical protein Naga_100438g1 [Nannochloropsis gaditana])

HSP 1 Score: 105.9 bits (263), Expect = 1.700e-19
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 0 
Query:    5 ELRQRSRGYVELG-HDDGMGMGEEDDSFYHGAAAGDNVGRGLGLSDAPLGGGGISSSQYNDGSDDDFSTSGPQGPVGKWARFRKTSRERLL 95
            E R+   GYVELG  ++ +  GE+ + FYH   AG+  G+ L L  APLGGGG  +S Y DGSDDDFSTSGPQGPVG WARFRKTSRER L
Sbjct:   63 EGRRVFAGYVELGGSEEAVSAGEDGEGFYHSGYAGEAAGKSLRLGTAPLGGGGPYTSHYQDGSDDDFSTSGPQGPVGTWARFRKTSRERCL 153
The following BLAST results are available for this feature:
BLAST of NO22G00200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27380.11.700e-1961.54hypothetical protein Naga_100438g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00200NO22G00200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00200.1NO22G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00200.1.cds1NO22G00200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00200.1.cds2NO22G00200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00200.1.cds3NO22G00200.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00200.1.cds4NO22G00200.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00200.1.cds5NO22G00200.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00200.1.cds6NO22G00200.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00200.1 ID=NO22G00200.1|Name=NO22G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=693bp
ATGCCAATAATAGAACTTAGGCAACGTTCAAGGGGCTATGTTGAGCTTGG
GCACGATGACGGGATGGGGATGGGGGAAGAAGACGACTCCTTCTACCATG
GAGCGGCCGCGGGGGACAACGTCGGAAGGGGCCTGGGCTTGAGCGATGCG
CCCCTGGGGGGTGGCGGCATCAGCAGTAGCCAATATAACGATGGGAGCGA
CGACGATTTCTCTACTAGCGGTCCTCAAGGCCCTGTTGGAAAATGGGCTC
GTTTCCGCAAGACCAGCAGAGAACGGCTGCTGCGTGGGTTCTCCCCTCTG
CGTCGATCCATCAGCACGACTGCCCACCATCCCTCTGCTCCCCGAGTCTA
TCAGTTCGTCTTCTTCTACTCTCTCTGGGCAGTGTGTTTTCTCTCCCCTG
TGGCCCATATGCTCCTCAACGAGTCGCCCTACATCCACGTGAAGAAGGGG
GAGCTCGATAAGCGGGCCATGGGTTGGGTAGTGGTCGAGGCTGTCATCTT
GTTCGCCTGCTTGCTCCTTTTCTCAGGCTACCTCTGGTACAGACACGCCC
GTAGAAAAGCAATGCTTGGGAGTCTCACCTACTCCCGACTGGGTGACGGC
AGAGGACTGCTGGACTTTGGAGGGGGAGGGAGGGAGGGAGGGAGGGGTAT
TTTCCGTCGATCCTCCTACCACGACGACCCCTTTTTGAGATAG
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protein sequence of NO22G00200.1

>NO22G00200.1-protein ID=NO22G00200.1-protein|Name=NO22G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MPIIELRQRSRGYVELGHDDGMGMGEEDDSFYHGAAAGDNVGRGLGLSDA
PLGGGGISSSQYNDGSDDDFSTSGPQGPVGKWARFRKTSRERLLRGFSPL
RRSISTTAHHPSAPRVYQFVFFYSLWAVCFLSPVAHMLLNESPYIHVKKG
ELDKRAMGWVVVEAVILFACLLLFSGYLWYRHARRKAMLGSLTYSRLGDG
RGLLDFGGGGREGGRGIFRRSSYHDDPFLR*
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mRNA from alignment at chr22:83881..85403-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00200.1 ID=NO22G00200.1|Name=NO22G00200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1523bp|location=Sequence derived from alignment at chr22:83881..85403- (Nannochloropsis oceanica)
ATGCCAATAATAGAACTTAGGCAACGTTCAAGGTAGGGTCGAAAGGGAAA
GTGAAGTGAGGGAGGGAGGGCGGGCGGGAGGATAAAAGATGCGTAGACGC
GGACTGTTCGATGACTGATGTCGCTTCCTCCTGTTCACTTCCTCCTTCCC
CCCCCCCCTTCCTCTTGCAGGGGCTATGTTGAGCTTGGGCACGATGACGG
GATGGGGATGGGGGAAGAAGACGACTCCTTCTACCATGGAGCGGCCGCGG
GGGACAACGTCGGAAGGGGCCTGGGCTTGAGCGATGGTACACACGCGCCC
ATCTCTTGCTTTTCTTTTCCCCCCCCTACCCTCCCTCCCATCCCTCCCTT
CTCTGCGGTATCATTCATTCTCTCTACCACAGTCAGATGGTCTCACTCCT
TCCCTTCCTCCCTCCTTCTCTCCCTCCCTCCCGCTCACAGCGCCCCTGGG
GGGTGGCGGCATCAGCAGTAGCCAATATAACGATGGGAGCGACGACGATT
TCTCTACTAGCGGTCCTCAAGGCCCTGTTGGAAAATGGGCTCGTTTCCGC
AAGACCAGCAGAGAACGGTATGTCACCCCCCGATCTCCCTCTTTCCCTCA
CTCCCTCTTTCCCTCCCTCCTCGGAGCTAATGCGATTTCTCTCCCCCGGT
CCCTTCCTCCGTCTTTTCCTTTCTTCCTCTCTCCTTTCTTTCCAGGCTGC
TGCGTGGGTTCTCCCCTCTGCGTCGATCCATCAGCACGACTGCCCACCAT
CCCTCTGCTCCCCGAGTCTATCAGTTCGTCTTCTTCTACTCTCTCTGGGC
AGTGTGTTTTCTCTCCCCTGTGGCCCATATGCTCCTCAACGAGTCGCCCT
ACATCCACGTGAAGAAGGGGGAGCTCGATAAGCGGGCCATGGGTTGGGTA
GTGGTCGAGGTAGGGAGGGAGCGAGGGAGGGAGGGAGGAAGGAAGAGGGG
ATCGGGCCCAACTCCTCCTTTTTCCGCCATCCTTTTTTTCTTACTTCTCA
GTCTATCCTCTCGCCCTCCTTTCCTCCTCCCCTCCCTCCTCCCCTCCTTA
CCTCTCTAGGCTGTCATCTTGTTCGCCTGCTTGCTCCTTTTCTCAGGCTA
CCTCTGGTACAGACACGCCCGTAGAAAAGCAATGGTAAGCCTCCTTTCCT
CTCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCCTGTCC
CTCCCTTAATCCCGATCATTTCTGCTGTTTATAGCCACCTCCCACCTTGC
TGCCTTCCAAACCCTCCCTCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCTCTTTCGCTCCACAAACAAAGCGTCTCCTCCTCTAACCCTTCCCACAT
CCATCCCTCCCTCCCTCCTTCCCTTTCTTCCTCCCTTCCTACAGCTTGGG
AGTCTCACCTACTCCCGACTGGGTGACGGCAGAGGACTGCTGGACTTTGG
AGGGGGAGGGAGGGAGGGAGGGAGGGGTATTTTCCGTCGATCCTCCTACC
ACGACGACCCCTTTTTGAGATAG
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Coding sequence (CDS) from alignment at chr22:83881..85403-

>NO22G00200.1 ID=NO22G00200.1|Name=NO22G00200.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr22:83881..85403- (Nannochloropsis oceanica)
ATGCCAATAATAGAACTTAGGCAACGTTCAAGGGGCTATGTTGAGCTTGG
GCACGATGACGGGATGGGGATGGGGGAAGAAGACGACTCCTTCTACCATG
GAGCGGCCGCGGGGGACAACGTCGGAAGGGGCCTGGGCTTGAGCGATGCG
CCCCTGGGGGGTGGCGGCATCAGCAGTAGCCAATATAACGATGGGAGCGA
CGACGATTTCTCTACTAGCGGTCCTCAAGGCCCTGTTGGAAAATGGGCTC
GTTTCCGCAAGACCAGCAGAGAACGGCTGCTGCGTGGGTTCTCCCCTCTG
CGTCGATCCATCAGCACGACTGCCCACCATCCCTCTGCTCCCCGAGTCTA
TCAGTTCGTCTTCTTCTACTCTCTCTGGGCAGTGTGTTTTCTCTCCCCTG
TGGCCCATATGCTCCTCAACGAGTCGCCCTACATCCACGTGAAGAAGGGG
GAGCTCGATAAGCGGGCCATGGGTTGGGTAGTGGTCGAGGCTGTCATCTT
GTTCGCCTGCTTGCTCCTTTTCTCAGGCTACCTCTGGTACAGACACGCCC
GTAGAAAAGCAATGCTTGGGAGTCTCACCTACTCCCGACTGGGTGACGGC
AGAGGACTGCTGGACTTTGGAGGGGGAGGGAGGGAGGGAGGGAGGGGTAT
TTTCCGTCGATCCTCCTACCACGACGACCCCTTTTTGAGATAG
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Synonyms
Publications