NO22G00160, NO22G00160 (gene) Nannochloropsis oceanica

Overview
NameNO22G00160
Unique NameNO22G00160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length874
Alignment locationchr22:64971..65844 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:64971..65844 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO22G00160 vs. NCBI_GenBank
Match: XP_005853604.1 (hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526] >EKU22756.1 hypothetical protein NGA_0429500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 125.2 bits (313), Expect = 9.800e-26
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQPPKPKEVREGW 83
            M T +  SVWD RPSFQLQY  + HLLG L MRDEVRE+QPGL+LGMGT+GYS AKR  DPLPFLLRGP Q P P  VRE +
Sbjct:  146 MHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESF 227          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: EWM27381.1 (hypothetical protein Naga_100438g3 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 9.800e-26
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQPPKPKEVREGW 83
            M T +  SVWD RPSFQLQY  + HLLG L MRDEVRE+QPGL+LGMGT+GYS AKR  DPLPFLLRGP Q P P  VRE +
Sbjct:  158 MHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESF 239          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_058088024.1 (hypothetical protein [Aquabacterium parvum])

HSP 1 Score: 75.5 bits (184), Expect = 8.900e-11
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M+T +  S +D RP++ L Y   + + GA+ M DEVR V PGL+LG+GT+G++  +R Q PLPF+LRGP+ P
Sbjct:  108 MQTLIAPSRYDGRPAYTLVYAAFQSMCGAIHMVDEVRRVAPGLYLGIGTWGFTDGQR-QVPLPFVLRGPIAP 178          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_066470104.1 (hypothetical protein [Skermania piniformis])

HSP 1 Score: 73.6 bits (179), Expect = 3.400e-10
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M TS+ AS +D+RP +QL Y     L G + M DE+R V+PG++LG+GT+G++  +RH  PLPF L GP +P
Sbjct:  100 MLTSIAASRYDSRPVYQLDYRPFDSLNGRINMVDEIRRVRPGVYLGIGTWGFTQRQRH-IPLPFQLLGPARP 170          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_061524771.1 (hypothetical protein [Acinetobacter venetianus] >KXZ70559.1 hypothetical protein AVENLUH13518_01824 [Acinetobacter venetianus])

HSP 1 Score: 71.2 bits (173), Expect = 1.700e-9
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M T +  S +D RP++QL Y     + G++ M DE+R V P L+LG+GTYG++  +RH  P PFLLRGP  P
Sbjct:   95 MMTMIATSRFDNRPAYQLIYRHFHSVCGSINMVDEIRRVSPNLYLGIGTYGFTHNQRH-IPYPFLLRGPHTP 165          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_101894696.1 (hypothetical protein [Ketobacter alkanivorans] >AUM13318.1 hypothetical protein Kalk_13180 [Ketobacter alkanivorans])

HSP 1 Score: 69.7 bits (169), Expect = 4.900e-9
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M T +  S +D +P+FQL Y     L G + M DEVR   PGL+LG+GTYG++ A+R + P PFLL GP  P
Sbjct:   95 MGTQLAPSRFDGKPAFQLIYRHFHSLCGTVHMVDEVRRAAPGLYLGLGTYGFTDAQR-RIPYPFLLTGPQGP 165          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: PTW74417.1 (hypothetical protein C8J51_2849 [Nocardioides sp. CF204])

HSP 1 Score: 69.7 bits (169), Expect = 4.900e-9
Identity = 35/72 (48.61%), Postives = 48/72 (66.67%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M TS+ +S +D RP +QL Y     L G + M DE+R V+PGL+LG+GT+G+S  +R   PLPF L GP +P
Sbjct:   99 MLTSIGSSRYDGRPVYQLDYRPFATLNGRINMIDEIRRVRPGLYLGLGTWGFSDRQR-MVPLPFQLVGPARP 169          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_061396643.1 (hypothetical protein [Acinetobacter haemolyticus] >KXO82767.1 hypothetical protein AYL20_01890 [Acinetobacter haemolyticus])

HSP 1 Score: 69.3 bits (168), Expect = 6.400e-9
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M T +  S +D +P++QL Y     + G++ M DE+R V P L+LG+GTYG++  +RH  P PFLL+GP  P
Sbjct:   95 MMTMIAPSRFDNQPAYQLVYRQFHSICGSINMVDEIRRVSPNLYLGIGTYGFTHHQRH-IPYPFLLKGPHTP 165          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_055415677.1 (hypothetical protein [Acinetobacter soli] >KQC95173.1 hypothetical protein APD01_14585 [Acinetobacter soli])

HSP 1 Score: 68.9 bits (167), Expect = 8.300e-9
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQP 73
            M T +  S +D RP++QL Y     + G++ M DE+R V P L+LG+GTYG++  +RH  P PFLL GP  P
Sbjct:   95 MMTMIATSRFDNRPAYQLIYRHFHSVCGSINMVDEIRRVSPNLYLGIGTYGFTHNQRH-IPYPFLLTGPHTP 165          
BLAST of NO22G00160 vs. NCBI_GenBank
Match: WP_103566355.1 (hypothetical protein [Actinomadura sp. 5-2] >POM22560.1 hypothetical protein BTM25_55100 [Actinomadura sp. 5-2])

HSP 1 Score: 68.6 bits (166), Expect = 1.100e-8
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPL 71
            M T +  S +D RP++ L Y     + GA+ M DEVR   PG++LG+GT+G++ A+R + PLPFLL GP+
Sbjct:   95 MHTLIAPSRYDGRPAYTLIYRAHASVCGAINMVDEVRRAAPGVYLGIGTWGFT-ARRRRVPLPFLLTGPV 163          
The following BLAST results are available for this feature:
BLAST of NO22G00160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853604.19.800e-2669.51hypothetical protein NGA_0429500 [Nannochloropsis ... [more]
EWM27381.19.800e-2669.51hypothetical protein Naga_100438g3 [Nannochloropsi... [more]
WP_058088024.18.900e-1148.61hypothetical protein [Aquabacterium parvum][more]
WP_066470104.13.400e-1048.61hypothetical protein [Skermania piniformis][more]
WP_061524771.11.700e-947.22hypothetical protein [Acinetobacter venetianus] >K... [more]
WP_101894696.14.900e-948.61hypothetical protein [Ketobacter alkanivorans] >AU... [more]
PTW74417.14.900e-948.61hypothetical protein C8J51_2849 [Nocardioides sp. ... [more]
WP_061396643.16.400e-944.44hypothetical protein [Acinetobacter haemolyticus] ... [more]
WP_055415677.18.300e-945.83hypothetical protein [Acinetobacter soli] >KQC9517... [more]
WP_103566355.11.100e-845.71hypothetical protein [Actinomadura sp. 5-2] >POM22... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00160.1NO22G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595274gene_7011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00160.1NO22G00160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00160 ID=NO22G00160|Name=NO22G00160|organism=Nannochloropsis oceanica|type=gene|length=874bp
GAGGGAGGGAGGGAGGGAGGGAGGCTGGGGGTACAATGTGTTCAGGTGTT
CGGGGGGCCAGGTATCGCGTCGGTTTCAAATGAAGACAAGCGTGGTGGCG
AGTGTGTGGGACGCAAGGCCGTCGTTTCAGTTGCAGTATGGAGACCAAAG
GCATTTGTTGGGAGCATTGCTCATgtaaggccttttccccaatcaataga
ttttttcaatcaactcaaatgttttatgaattctctttaattattcatcc
atctttctagtccatcgatctatcgctgtatatttcatttattttctatt
tatgaatgtgtcatcgtttaaattgtcatgcgatttgcaatagccgacgc
cattcaagtctcttttcatccactctcttcgtttaacacaacacttttgc
agGCGCGATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGgtaagca
aaatagcatacatgtatacagcatacaccaggtcttacccaagcgtgctt
ccttccctccctagacccctgaagcactgccgcgtggcgatagatggagt
ctagtgcatgctatttagacctggtgcattaataatcataacgcgtggtt
cacgtccatccacgcatcaatcacacaataaatcgaagctactccattca
tctcaccccagatcatatttccatttttctcctcagGCATGGGCACCTAC
GGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTGCG
CGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCTAT
AGTTCTAGAACGTTACGGGGCGCCGTTGCCCTAAACCCGGGCTTACATCA
GGAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of NO22G00160.1

>NO22G00160.1-protein ID=NO22G00160.1-protein|Name=NO22G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTY
GYSAAKRHQDPLPFLLRGPLQPPKPKEVREGWL*
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Synonyms
Publications