NO22G00160.1, NO22G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00160.1
Unique NameNO22G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length403
Alignment locationchr22:64971..65844 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:64971..65844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO22G00160.1 vs.
Match: EWM27381.1 (hypothetical protein Naga_100438g3 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 9.800e-26
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 0 
Query:    1 MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTYGYSAAKRHQDPLPFLLRGPLQPPKPKEVREGW 83
            M T +  SVWD RPSFQLQY  + HLLG L MRDEVRE+QPGL+LGMGT+GYS AKR  DPLPFLLRGP Q P P  VRE +
Sbjct:  158 MHTCITTSVWDGRPSFQLQYAGETHLLGRLRMRDEVREIQPGLYLGMGTFGYSEAKRRGDPLPFLLRGPYQAPVPGAVRESF 239
The following BLAST results are available for this feature:
BLAST of NO22G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27381.19.800e-2669.51hypothetical protein Naga_100438g3 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00160NO22G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00160.1NO22G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00160.1.cds1NO22G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00160.1.cds2NO22G00160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00160.1.cds3NO22G00160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00160.1 ID=NO22G00160.1|Name=NO22G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=403bp
GAGGGAGGGAGGGAGGGAGGGAGGCTGGGGGTACAATGTGTTCAGGTGTT
CGGGGGGCCAGGTATCGCGTCGGTTTCAAATGAAGACAAGCGTGGTGGCG
AGTGTGTGGGACGCAAGGCCGTCGTTTCAGTTGCAGTATGGAGACCAAAG
GCATTTGTTGGGAGCATTGCTCATGCGCGATGAGGTTCGAGAGGTCCAGC
CTGGGCTCTTCTTAGGCATGGGCACCTACGGGTATAGCGCGGCGAAGAGG
CATCAAGACCCTTTGCCCTTCTTATTGCGCGGGCCTTTGCAGCCGCCCAA
GCCGAAAGAGGTCCGGGAGGGCTGGCTATAGTTCTAGAACGTTACGGGGC
GCCGTTGCCCTAAACCCGGGCTTACATCAGGAGGGAGGGAGGGAGGGAGG
GAG
back to top

protein sequence of NO22G00160.1

>NO22G00160.1-protein ID=NO22G00160.1-protein|Name=NO22G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTY
GYSAAKRHQDPLPFLLRGPLQPPKPKEVREGWL*
back to top

mRNA from alignment at chr22:64971..65844+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00160.1 ID=NO22G00160.1|Name=NO22G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=874bp|location=Sequence derived from alignment at chr22:64971..65844+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGAGGGAGGCTGGGGGTACAATGTGTTCAGGTGTT
CGGGGGGCCAGGTATCGCGTCGGTTTCAAATGAAGACAAGCGTGGTGGCG
AGTGTGTGGGACGCAAGGCCGTCGTTTCAGTTGCAGTATGGAGACCAAAG
GCATTTGTTGGGAGCATTGCTCATGTAAGGCCTTTTCCCCAATCAATAGA
TTTTTTCAATCAACTCAAATGTTTTATGAATTCTCTTTAATTATTCATCC
ATCTTTCTAGTCCATCGATCTATCGCTGTATATTTCATTTATTTTCTATT
TATGAATGTGTCATCGTTTAAATTGTCATGCGATTTGCAATAGCCGACGC
CATTCAAGTCTCTTTTCATCCACTCTCTTCGTTTAACACAACACTTTTGC
AGGCGCGATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGTAAGCA
AAATAGCATACATGTATACAGCATACACCAGGTCTTACCCAAGCGTGCTT
CCTTCCCTCCCTAGACCCCTGAAGCACTGCCGCGTGGCGATAGATGGAGT
CTAGTGCATGCTATTTAGACCTGGTGCATTAATAATCATAACGCGTGGTT
CACGTCCATCCACGCATCAATCACACAATAAATCGAAGCTACTCCATTCA
TCTCACCCCAGATCATATTTCCATTTTTCTCCTCAGGCATGGGCACCTAC
GGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTGCG
CGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCTAT
AGTTCTAGAACGTTACGGGGCGCCGTTGCCCTAAACCCGGGCTTACATCA
GGAGGGAGGGAGGGAGGGAGGGAG
back to top

Coding sequence (CDS) from alignment at chr22:64971..65844+

>NO22G00160.1 ID=NO22G00160.1|Name=NO22G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=252bp|location=Sequence derived from alignment at chr22:64971..65844+ (Nannochloropsis oceanica)
ATGAAGACAAGCGTGGTGGCGAGTGTGTGGGACGCAAGGCCGTCGTTTCA
GTTGCAGTATGGAGACCAAAGGCATTTGTTGGGAGCATTGCTCATGCGCG
ATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGCATGGGCACCTAC
GGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTGCG
CGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCTAT
AG
back to top
Synonyms
Publications