NO22G00120, NO22G00120 (gene) Nannochloropsis oceanica

Overview
NameNO22G00120
Unique NameNO22G00120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length876
Alignment locationchr22:47554..48429 -

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Properties
Property NameValue
DescriptionCyclin-dependent kinases regulatory subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:47554..48429 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007049cell cycle
GO:0007049cell cycle
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
GO:0030234enzyme regulator activity
GO:0016301kinase activity
Vocabulary: INTERPRO
TermDefinition
IPR036858Cyclin-dep_kinase_reg-sub_sf
IPR000789Cyclin-dep_kinase_reg-sub
Homology
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: EWM20432.1 (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 2.700e-49
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGAVQRK 105
            MASRIEYSEKYMDD HEYRHVILPKE+ARSLPKQRLLTE+EWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV AELEREAKE YA++MNGAVQRK
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 104
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: XP_005855194.1 (cyclin-dependent kinase regulatory subunit CKS1 [Nannochloropsis gaditana CCMP526] >EKU21163.1 cyclin-dependent kinase regulatory subunit CKS1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.4 bits (459), Expect = 1.400e-42
Identity = 98/153 (64.05%), Postives = 101/153 (66.01%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPK-------------------------------------------------ELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGAVQRK 105
            MASRIEYSEKYMDD HEYRHVILPK                                                 ELARSLPKQRLLTE+EWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV AELEREAKE YA++MNGAVQRK
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEALARHRSGVRATGRNGPGCGLWDVGGSPPLPYALVDPTPLSFLSHPLQELARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 153
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: EWM20433.1 (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 7.400e-39
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 82
            MASRIEYSEKYMDD HEYRHVILPKE+ARSLPKQRLLTE+EWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV 81
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: XP_008899637.1 (cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >XP_008899638.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >ETI54852.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1569] >ETI54853.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1569] >ETK94708.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >ETL48106.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >ETM01201.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >ETM54381.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica] >ETM54382.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica] >ETN15002.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica INRA-310] >ETN15003.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica INRA-310] >ETO83661.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P1976] >ETO83662.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P1976] >ETP24692.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica CJ01A1] >ETP52651.1 cyclin-dependent kinase regulatory subunit 1 [Phytophthora parasitica P10297] >ETP52652.1 cyclin-dependent kinase regulatory subunit 1, variant 1 [Phytophthora parasitica P10297] >KUF85705.1 Cyclin-dependent kinases regulatory subunit 1 [Phytophthora nicotianae])

HSP 1 Score: 163.3 bits (412), Expect = 4.000e-37
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMN 99
            ++SRIEYSEKY+DD HEYRHVILPKE+ RSLP  RLLTETEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V  E+E++AKE YAK  N
Sbjct:    5 LSSRIEYSEKYVDDTHEYRHVILPKEMQRSLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNPEMEKQAKEKYAKEFN 101
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: XP_024576841.1 (cyclin-dependent kinase regulatory subunit 1 [Plasmopara halstedii] >CEG40472.1 cyclin-dependent kinase regulatory subunit 1 [Plasmopara halstedii])

HSP 1 Score: 163.3 bits (412), Expect = 4.000e-37
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMN 99
            M+SRIEYSEKY+DD HEYRHVILPKE+ R+LP  RLLTETEWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V  E+E++AKE YAK  N
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMQRNLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNLEMEKQAKEKYAKEFN 101
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: CBJ27816.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 161.8 bits (408), Expect = 1.200e-36
Identity = 74/97 (76.29%), Postives = 85/97 (87.63%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTM 98
            MA+RIEYSEKY DD  EYRHVILPK+LA+ LPK R+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV   LE+EAK+AY + +
Sbjct:    1 MAARIEYSEKYQDDSFEYRHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQEL 97
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: POM72371.1 (Cyclin-dependent Kinase regulatory subunit 1 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 161.0 bits (406), Expect = 2.000e-36
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMN 99
            ++SRIEYSEKY+DD HEYRHVILPKE+ RSLP  RLLTETEWR +GVQQSRGW HYAIH+PEPHILLFRRP GTDP TG+V  E+E++AKE YAK  N
Sbjct:   11 LSSRIEYSEKYVDDTHEYRHVILPKEMQRSLP-DRLLTETEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPRGTDPATGRVNPEMEKQAKEKYAKDFN 107
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: XP_008614517.1 (cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >XP_012200384.1 hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65] >EQC32115.1 cyclin-dependent kinase regulatory subunit CKS1 [Saprolegnia diclina VS20] >KDO28786.1 hypothetical protein SPRG_05708 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 160.6 bits (405), Expect = 2.600e-36
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAK 96
            M+SRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V + LEREAKE YA+
Sbjct:    5 MSSRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSILEREAKEKYAQ 98
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: OEU12635.1 (CKS-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 160.6 bits (405), Expect = 2.600e-36
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 0 
Query:    2 ASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAY 94
            ASRIEYSEKY DD +EYRHVILPKELA++LPK RLL+E+EWRGIGVQQSRGW HYAIHRPEPHILLFRRPLGTDP +G+V  E+ER+A+E Y
Sbjct:    5 ASRIEYSEKYADDMNEYRHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEY 96
[Close]
BLAST of NO22G00120 vs. NCBI_GenBank
Match: OQR98089.1 (cyclin-dependent kinase regulatory subunit CKS1 [Achlya hypogyna])

HSP 1 Score: 160.6 bits (405), Expect = 2.600e-36
Identity = 76/97 (78.35%), Postives = 86/97 (88.66%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTM 98
            +ASRIEYSEKY+DD HEYRHVILPKE+AR+LP  RLLTE+EWR +GVQQSRGW HYAIH+PEPHILLFRRPLGTDP TG+V + +EREAKE YA  M
Sbjct:    5 IASRIEYSEKYVDDTHEYRHVILPKEMARNLP-DRLLTESEWRQLGVQQSRGWVHYAIHKPEPHILLFRRPLGTDPTTGRVNSVMEREAKEKYAHDM 100
The following BLAST results are available for this feature:
BLAST of NO22G00120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20432.12.700e-4993.27cyclin-dependent kinases regulatory subunit [Nanno... [more]
XP_005855194.11.400e-4264.05cyclin-dependent kinase regulatory subunit CKS1 [N... [more]
EWM20433.17.400e-3996.30cyclin-dependent kinases regulatory subunit [Nanno... [more]
XP_008899637.14.000e-3777.55cyclin-dependent kinase regulatory subunit 1 [Phyt... [more]
XP_024576841.14.000e-3777.55cyclin-dependent kinase regulatory subunit 1 [Plas... [more]
CBJ27816.11.200e-3676.29conserved unknown protein [Ectocarpus siliculosus][more]
POM72371.12.000e-3676.53Cyclin-dependent Kinase regulatory subunit 1 [Phyt... [more]
XP_008614517.12.600e-3680.00cyclin-dependent kinase regulatory subunit CKS1 [S... [more]
OEU12635.12.600e-3680.43CKS-domain-containing protein [Fragilariopsis cyli... [more]
OQR98089.12.600e-3678.35cyclin-dependent kinase regulatory subunit CKS1 [A... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR115ngnoR115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00120.1NO22G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595252gene_7006Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100743g2gene9975Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00120.1NO22G00120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00120 ID=NO22G00120|Name=NO22G00120|organism=Nannochloropsis oceanica|type=gene|length=876bp
ATGGCCAGTCGGATCGAGTATTCGGAGAAGTACATGGACGACAAGCATGA
GTACCGGCACGTCATTCTACCCAAGgtacgtcttggcttccttcccgccc
tccttccctccctccttccctccccccctttattcccttctcattttcct
gttttttcttcctggcttttatttcgacatttctcctccaccttatttcc
ttaaatccctcgcgcgcggtatattcacgtcacacatccatggtcacact
cacccactccctccctccctccctccctccctccccatcacagGAGCTAG
CCCGGTCCTTGCCCAAGCAACGCCTGCTCACTGAGACTGAATGGCGAGGC
ATCGGCGTGCAGCAATCAAGGGGCTGGCAGCATTATGCCATCCATCGgta
cgacgtcctccctccctccctccctcctcgctcctcggcaccgactcatc
cttcctccctgcctcccaccctctcgcccctcccttagGCCAGAGCCCCA
CATTCTCCTCTTCCGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAAGg
taggagggagggagggagggaggagggagatgagataatgcgtatccatt
tctctttttttggtctttggattgtcgagaaggcggagcgtacctgttga
atctctttatcattacagattcactttgggatcacacacagttacaccca
cctccagccctcctgccctccctccccttttctagtcatcacactgctcc
aatttcacccgttccctccctccctccctccctccctccctccctcccta
gGTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCA
TGAATGGCGCCGTGCAACGAAAGTAG
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protein sequence of NO22G00120.1

>NO22G00120.1-protein ID=NO22G00120.1-protein|Name=NO22G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQS
RGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGA
VQRK*
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Synonyms
Publications