NO22G00120.1, NO22G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00120.1
Unique NameNO22G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length315
Alignment locationchr22:47554..48429 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:47554..48429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00120.1 vs.
Match: EWM20432.1 (cyclin-dependent kinases regulatory subunit [Nannochloropsis gaditana])

HSP 1 Score: 203.8 bits (517), Expect = 2.700e-49
Identity = 97/104 (93.27%), Postives = 101/104 (97.12%), Query Frame = 0 
Query:    1 MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGAVQRK 105
            MASRIEYSEKYMDD HEYRHVILPKE+ARSLPKQRLLTE+EWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKV AELEREAKE YA++MNGAVQRK
Sbjct:    1 MASRIEYSEKYMDDNHEYRHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNGAVQRK 104
The following BLAST results are available for this feature:
BLAST of NO22G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20432.12.700e-4993.27cyclin-dependent kinases regulatory subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00120NO22G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00120.1NO22G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00120.1.cds1NO22G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00120.1.cds2NO22G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00120.1.cds3NO22G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00120.1.cds4NO22G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00120.1 ID=NO22G00120.1|Name=NO22G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGGCCAGTCGGATCGAGTATTCGGAGAAGTACATGGACGACAAGCATGA
GTACCGGCACGTCATTCTACCCAAGGAGCTAGCCCGGTCCTTGCCCAAGC
AACGCCTGCTCACTGAGACTGAATGGCGAGGCATCGGCGTGCAGCAATCA
AGGGGCTGGCAGCATTATGCCATCCATCGGCCAGAGCCCCACATTCTCCT
CTTCCGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAAGGTCGTCGCGG
AGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCATGAATGGCGCC
GTGCAACGAAAGTAG
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protein sequence of NO22G00120.1

>NO22G00120.1-protein ID=NO22G00120.1-protein|Name=NO22G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQS
RGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGA
VQRK*
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mRNA from alignment at chr22:47554..48429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00120.1 ID=NO22G00120.1|Name=NO22G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=876bp|location=Sequence derived from alignment at chr22:47554..48429- (Nannochloropsis oceanica)
ATGGCCAGTCGGATCGAGTATTCGGAGAAGTACATGGACGACAAGCATGA
GTACCGGCACGTCATTCTACCCAAGGTACGTCTTGGCTTCCTTCCCGCCC
TCCTTCCCTCCCTCCTTCCCTCCCCCCCTTTATTCCCTTCTCATTTTCCT
GTTTTTTCTTCCTGGCTTTTATTTCGACATTTCTCCTCCACCTTATTTCC
TTAAATCCCTCGCGCGCGGTATATTCACGTCACACATCCATGGTCACACT
CACCCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCATCACAGGAGCTAG
CCCGGTCCTTGCCCAAGCAACGCCTGCTCACTGAGACTGAATGGCGAGGC
ATCGGCGTGCAGCAATCAAGGGGCTGGCAGCATTATGCCATCCATCGGTA
CGACGTCCTCCCTCCCTCCCTCCCTCCTCGCTCCTCGGCACCGACTCATC
CTTCCTCCCTGCCTCCCACCCTCTCGCCCCTCCCTTAGGCCAGAGCCCCA
CATTCTCCTCTTCCGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAAGG
TAGGAGGGAGGGAGGGAGGGAGGAGGGAGATGAGATAATGCGTATCCATT
TCTCTTTTTTTGGTCTTTGGATTGTCGAGAAGGCGGAGCGTACCTGTTGA
ATCTCTTTATCATTACAGATTCACTTTGGGATCACACACAGTTACACCCA
CCTCCAGCCCTCCTGCCCTCCCTCCCCTTTTCTAGTCATCACACTGCTCC
AATTTCACCCGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTA
GGTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCA
TGAATGGCGCCGTGCAACGAAAGTAG
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Coding sequence (CDS) from alignment at chr22:47554..48429-

>NO22G00120.1 ID=NO22G00120.1|Name=NO22G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at chr22:47554..48429- (Nannochloropsis oceanica)
ATGGCCAGTCGGATCGAGTATTCGGAGAAGTACATGGACGACAAGCATGA
GTACCGGCACGTCATTCTACCCAAGGAGCTAGCCCGGTCCTTGCCCAAGC
AACGCCTGCTCACTGAGACTGAATGGCGAGGCATCGGCGTGCAGCAATCA
AGGGGCTGGCAGCATTATGCCATCCATCGGCCAGAGCCCCACATTCTCCT
CTTCCGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAAGGTCGTCGCGG
AGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCATGAATGGCGCC
GTGCAACGAAAGTAG
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Synonyms
Publications