NO22G00110, NO22G00110 (gene) Nannochloropsis oceanica

Overview
NameNO22G00110
Unique NameNO22G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3670
Alignment locationchr22:42925..46594 +

Link to JBrowse

Properties
Property NameValue
DescriptionCholine transporter
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:42925..46594 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007603Choline_transptr-like
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO22G00110 vs. NCBI_GenBank
Match: EWM20427.1 (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 293.1 bits (749), Expect = 1.600e-75
Identity = 143/173 (82.66%), Postives = 156/173 (90.17%), Query Frame = 0
Query:  318 LVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW 491
            +VE AR++RDNALKCL            QYLNRWA+TYIGIYG+SF+EAGHKVYNLF RRGLT LLNDNL+GRVLFLG+LMVGL+TCG+GVLLAF LQHSYLKDVE+APSLLGGAGFVVGFFVTDVMMNVVSAAVAA+LVCFLEDSQALAITHPDYHSYL AAW+MRFPDINW
Sbjct:    1 MVENARQERDNALKCLXXXXXXXXXXXXQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: GAX92879.1 (Hypothetical protein PINS_000783 [Pythium insidiosum])

HSP 1 Score: 260.8 bits (665), Expect = 8.700e-66
Identity = 165/475 (34.74%), Postives = 245/475 (51.58%), Query Frame = 0
Query:   42 GCRDPLFLAAFILNLGVIVWLAADYGAAALKE---APKPDAENPAVKTHDGHPLIVLCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQDE------------------------XXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLA-FALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            GCRD  F   F+LN+  IV L   +G  +LK              +   D    + +   ++ +A VLA   +  ++  A  +I FTLW S+ LS   A LG   G   L VFGL+ + +  CY RAV+  IPFAAANL+ A +A++  +     A    ++  +W V W++ + GV ++ + E                                             V YF +LVSF+W LQV   V + T+AG V ++W+    + A     S  R+ TTS GSICFG+L+VA+++A++ L  +ARE+  + L C+ +CL+ CL A  +Y+NRWAF Y+GIYGY F +AG  V++LF  RG   ++ND+LIG VL   +L VGL+  G+GV  A F  + SY     ++   LG  GF+VG  V    ++V+ ++VA I VCF ED  A   +HPD +  L   W   +P+I
Sbjct:   77 GCRDMPFAVVFLLNVAAIVGLMVVWGFDSLKNDXXXXXXXXXXXLISARDAKVTLGVALGMSVLAVVLALLSVKLIVAYARCMINFTLWFSVXLSFAVAGLGFYIGSIFLGVFGLIXALLGLCYARAVQHRIPFAAANLKVAAAAISKHWSTYLVAILFTIVQIVWVVAWAIALLGVANHLRKEDGPSSAGLRNEGERCFSNSDCASSSCRNNRCYGGATFYKDSAVNYVIYFFMLVSFYWGLQVFKNVSHTTIAGTVATFWY--NAESAGATGSSLKRSMTTSFGSICFGSLLVAIVQALRELANQAREE-GSFLGCIAECLLGCLQAILEYINRWAFVYVGIYGYKFTQAGKAVFDLFHNRGFDAIINDDLIGNVLSFAALGVGLICAGVGVAFAHFTDEVSY----SNSMLFLGILGFIVGVGVAVTPLSVIDSSVATIFVCFAEDPVAFQQSHPDLYQPLVTEWHNLYPEI 544          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: XP_024584919.1 (hypothetical protein PPTG_14520 [Plasmopara halstedii] >CEG48550.1 hypothetical protein PPTG_14520 [Plasmopara halstedii])

HSP 1 Score: 256.1 bits (653), Expect = 2.100e-64
Identity = 164/459 (35.73%), Postives = 255/459 (55.56%), Query Frame = 0
Query:   32 PSAHATGEKRGCRDPLFLAAFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIVLCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQDEXXXXXXXXXXXXXXXXXXXXXVW--YFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            P  +   +K GC+D  +   F+LN+GVI+ L A +G   + ++    +E   +   D   ++ +   +A I+  LA   +  ++  A  +I F LW ++ +S   A  G + G   + +FG+L + +  CY RAV+  IPFA ANLR A  A++        +    ++  +W V+WS+ + GV +   +    XXXXXXXXXXXX       +  +F LL+SF+W LQV   V + TVAG V ++W+  + +     + S  RA TTS GSICFG+LIVA L+A++ L E  R++  +A+ C  +C++ CL +  +Y NRWA+ Y+GIYGY F +AG  V+ LF +RG   ++ND+LIG VL   +L VGL+  G G L+A   + +      D+   L   G VVG  V    + V+ ++VA I VCF ED  A   +HPD ++ L   W   +P++
Sbjct:   24 PEKNNPEDKAGCQDWPYAVLFVLNVGVIIALMALWGVKTVTDSQGSSSE--LLSGDDTRVVVSIAVGMAVISMTLALTMVKLIVAYARVMILFVLWFNVGISCAFAAYGFIIGNLFIAIFGVLIALLHICYARAVQHRIPFAVANLRVAEGAISKHGSTYIVSVVFTVVQIVWVVIWSMALVGVANEIAENEPDXXXXXXXXXXXXSRQPRGSYAAFFFLLLSFYWGLQVFKNVAHTTVAGTVATFWY--QAESKGATAASLKRATTTSFGSICFGSLIVAFLQALRALAENGRQE-GSAMACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAMSFHDSTVFLAVLGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPDLYAPLVQEWHNLYPEV 474          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: ETI40021.1 (hypothetical protein F443_14464 [Phytophthora parasitica P1569] >ETL33562.1 hypothetical protein L916_14007 [Phytophthora parasitica] >ETL86845.1 hypothetical protein L917_13797 [Phytophthora parasitica] >ETO68727.1 hypothetical protein F444_14462 [Phytophthora parasitica P1976] >ETP09890.1 hypothetical protein F441_14342 [Phytophthora parasitica CJ01A1] >ETP37957.1 hypothetical protein F442_14306 [Phytophthora parasitica P10297])

HSP 1 Score: 251.9 bits (642), Expect = 4.000e-63
Identity = 166/453 (36.64%), Postives = 256/453 (56.51%), Query Frame = 0
Query:   40 KRGCRDPLFLAAFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIV-LCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGV---ISYFQDEXXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            K GC+D  F   F+LN+GVI+ L   +G   + +   P+  +  + + D   ++V +   +A ++ VLA   +  ++  A  +I F LW ++ +S   A  G + G   + + GLL + ++ CY RAV+  IPFA ANLR A  A++        +    ++   W V+W++ + GV   I+      XXXXXXXXXXXX        V YF LL+SF+W LQV   V + TVAG V ++W+  + +       S  RA TTS GSICFG+LIVA L+A++ L E +R+D  +AL C  +C++ CL +  +Y NRWA+ Y+GIYGY F +AG  V+ LF +RG   ++ND+LIG VL   +L VGL+  G+G L+A   + +     +++ + L   G VVG  V    + V+ ++VA I VCF ED  A   +HP+ ++ L   W   +P++
Sbjct:   32 KVGCQDWPFALLFVLNVGVIIALMVLWGVDTVTD---PENNSSELMSGDDTKVVVGIAVGMAGVSMVLALLMVKLIVAYARVMILFVLWFNVGISFAFAAFGFIIGNIFIGIIGLLIAMLNLCYARAVQHRIPFAVANLRVAEGAISKHGSTYIVSLVFTIVQIGWVVIWAMALLGVANEIAENNPSSXXXXXXXXXXXXYKQSGGSYVAYFFLLLSFYWGLQVFKNVAHTTVAGTVATFWY--QSESMGATGASLKRATTTSFGSICFGSLIVAFLQALRALAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: XP_008910115.1 (hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310] >ETN04721.1 hypothetical protein PPTG_14520 [Phytophthora parasitica INRA-310])

HSP 1 Score: 250.4 bits (638), Expect = 1.200e-62
Identity = 166/453 (36.64%), Postives = 255/453 (56.29%), Query Frame = 0
Query:   40 KRGCRDPLFLAAFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIV-LCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGV---ISYFQDEXXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            K GC+D  F   F+LN+GVI+ L   +G   + +   P+  +  + + D   ++V +   +A ++ VLA   +  ++  A  +I F LW ++ +S   A  G + G   + + GLL + ++ CY RAV+  IPFA ANLR A  A++        +    ++   W V+W++ + GV   I+      XXXXXXXXXXXX        V YF LL+SF+W LQV   V + TVAG V ++W+  + +       S  RA TTS GSICFG+LIVA L+A++ L E +R+D  +AL C  +C++ CL +  +Y NRWA+ Y+GIYGY F +AG  V+ LF +RG   ++ND+LIG VL   +L VGL+  G G L+A   + +     +++ + L   G VVG  V    + V+ ++VA I VCF ED  A   +HP+ ++ L   W   +P++
Sbjct:   32 KVGCQDWPFALLFVLNVGVIIALMVLWGVDTVTD---PENNSSELMSGDDTKVVVGIAVGMAGVSMVLALLMVKLIVAYARVMILFVLWFNVGISFAFAAFGFIIGNIFIGIIGLLIAMLNLCYARAVQHRIPFAVANLRVAEGAISKHGSTYIVSLVFTIVQIGWVVIWAMALLGVANEIAENNPSSXXXXXXXXXXXXYKQSGGSYVAYFFLLLSFYWGLQVFKNVAHTTVAGTVATFWY--QSESMGATGASLKRATTTSFGSICFGSLIVAFLQALRALAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: KUF81700.1 (Metal transporter CNNM4 [Phytophthora nicotianae])

HSP 1 Score: 250.4 bits (638), Expect = 1.200e-62
Identity = 166/453 (36.64%), Postives = 255/453 (56.29%), Query Frame = 0
Query:   40 KRGCRDPLFLAAFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIV-LCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGV---ISYFQDEXXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            K GC+D  F   F+LN+GVI+ L   +G   + +   P+  +  + + D   ++V +   +A ++ VLA   +  ++  A  +I F LW ++ +S   A  G + G   + + GLL + ++ CY RAV+  IPFA ANLR A  A++        +    ++   W V+W++ + GV   I+      XXXXXXXXXXXX        V YF LL+SF+W LQV   V + TVAG V ++W+  + +       S  RA TTS GSICFG+LIVA L+A++ L E +R+D  +AL C  +C++ CL +  +Y NRWA+ Y+GIYGY F +AG  V+ LF +RG   ++ND+LIG VL   +L VGL+  G G L+A   + +     +++ + L   G VVG  V    + V+ ++VA I VCF ED  A   +HP+ ++ L   W   +P++
Sbjct:   32 KVGCQDWPFALLFVLNVGVIIALMVLWGVDTVTD---PENNSSELMSGDDTKVVVGIAVGMAGVSMVLALLMVKLIVAYARVMILFVLWFNVGISFAFAAFGFIIGNIFIGIIGLLIAMLNLCYARAVQHRIPFAVANLRVAEGAISKHGSTYIVSLVFTIVQIGWVVIWAMALLGVANEIAENNPSSXXXXXXXXXXXXYKQSGGSYVAYFFLLLSFYWGLQVFKNVAHTTVAGTVATFWY--QSESMGATGASLKRATTTSFGSICFGSLIVAFLQALRALAENSRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGAGALIA---ETTDAVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQRSHPELYAPLVQEWHNLYPEV 475          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: XP_012199058.1 (hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65] >KDO30254.1 hypothetical protein SPRG_19805 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 248.8 bits (634), Expect = 3.400e-62
Identity = 157/499 (31.46%), Postives = 245/499 (49.10%), Query Frame = 0
Query:   24 PSGGAAPL-------PSAHATGEKRGCRDPLFLAAFILNLGVIVWLAADYGAAALKE------APKPDAENPAVKTHDGHPLIVLCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQDE---------------------XXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            P GG A L       P A AT    G RD  F   FI N+  ++ L   +G   L+                     +   ++++   +  ++GVL+   ++FM++ A+ +I F+LW  + L++   +  ++  Q AL + G +   +S CY  AV+  IPFAAANLR A +A+         A+ +L+L  +W  +W+    G+ ++  ++                                          V YF +L+SFFW +Q +  V + TVAG V +WW+    + A     S  R  TTS GSIC G+LIVA+L+A++ L E+AR   D A  C+ +C++ CL +  +Y NRWAF Y+GIYGY F +AG  V  LF  RG  T++ND+LIG VL   SL VG L  G+G  L +    +      ++  ++   G + G  ++ +  +V+ +AVA I VCF ED  AL  +HP++ + L   W   +PDI
Sbjct:   21 PQGGTAHLGPVQSMKPQAPAT---TGYRDWPFAVLFIGNVAAMIVLLVMWGIPVLQNXXXXXXXXXXXXXXXXXXXKEMRTVLIISGVMVVLSGVLSLVMLSFMVRFASGMITFSLWFGVGLNVLFTIYAVIKKQYALAILGAIFVLLSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDATSSTRGKPDGSTCSISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWY--STNSAGATGASLKRTLTTSFGSICLGSLIVAILQALRQLAEEARRSGD-AAACIAECILGCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLG--LVYTYIDTANTTFNNSQIIIPVMGLIFGIGISIIPFSVIDSAVATIFVCFAEDPAALQTSHPEHFNELMTEWHRMYPDI 511          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: OQS02555.1 (hypothetical protein THRCLA_05080 [Thraustotheca clavata])

HSP 1 Score: 240.0 bits (611), Expect = 1.600e-59
Identity = 158/501 (31.54%), Postives = 242/501 (48.30%), Query Frame = 0
Query:   24 PSGGAAPLPSAHA----TGEKRGCRDPLFLAAFILNLGVIVWLAADYGAAAL-------KEAPKPDAENPAVKTHDGHPLIVLCSALAAIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQD-------------------------EXXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            PSGG   L +  +         G RD  F   F+ N+  IV L   +G   L                       D H +++  +A+A I+ VL+   ++F+ K A  +I F+LW S+ L +  A+  +V  Q  L +   + +  + CY  AV+  IPFAAANLR   +A+         A+ +LLL  +W  +WS   +G+ ++  +                                               V YF +L+SFFW + VV  + + TVAG V +WW+    D       S  R  TTS GSIC G+LIVAVL+A++ L E+AR   D A  C+ +C++ CL++  +Y NRWAF Y+GIYGY F +AG  V  LF  RG  T++ND+L+G  L   +L VG L  G+G++  +    ++  + + A  L+   G  VG  V+ + ++V+ +AVA + VCF ED  AL  +H ++ + L   W   FPD+
Sbjct:   21 PSGGNVQLGAVQSMKPQVAAATGLRDWPFAFLFLGNVVAIVVLLVMWGIPVLTXXXXXXXXXXXXXXXXXXXXXXDLHTVLIYAAAMAVISAVLSFLMLSFITKFARGMITFSLWFSVGLDVLFAIYAVVKHQYVLAILATIFALFAICYAFAVRDRIPFAAANLRCGAAAIKKHSSTYCVAFSMLLLQIVWVGVWSFAAFGLSNHLLENKTKTYNSNGLANGGRCNANSMCYSNYCYNYVCKDTNALADLKSTTYVGYFFMLISFFWGMNVVKNITHATVAGTVATWWY--SSDSRGATGASLKRTLTTSFGSICLGSLIVAVLQALRQLAEEARRQGD-AAACIAECILGCLESMMEYFNRWAFIYVGIYGYKFTDAGKAVIGLFRDRGFETIINDDLVGNALGFAALGVGFLCAGLGMIYTYIDTTNF--NFQYANVLVPVLGLCVGIAVSIIPLSVIDSAVATVFVCFAEDPAALQQSHQEHFNELMYEWHRLFPDV 516          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: XP_008606249.1 (hypothetical protein SDRG_02440 [Saprolegnia diclina VS20] >EQC40550.1 hypothetical protein SDRG_02440 [Saprolegnia diclina VS20])

HSP 1 Score: 236.5 bits (602), Expect = 1.800e-58
Identity = 136/407 (33.42%), Postives = 212/407 (52.09%), Query Frame = 0
Query:  103 AGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQDE---------------------XXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            +GVL+   ++FM++ A+ +I F+LW  + L++   +   +  Q  L + G +    S CY  AV+  IPFAAANLR A +A+         A+ +L L  +W  +W++   G+ ++  ++                                          V YF +L+SFFW +Q +  V + TVAG V +WW+    + A     S  R  TTS GSIC G+LIVA+L+A++ L E+AR   D A  C+ +C++ CL +  +Y NRWAF Y+GIYGY F +AG  V  LF  RG  T++ND+LIG VL   SL VG L  G+G++  +    +      ++  ++   G + G  ++ +  +V+ +AVA I VCF ED  AL  +HP++ + L   W   +PDI
Sbjct:  110 SGVLSLLMLSFMVRFASGMITFSLWFGVGLNVLFTIYAAIKQQYGLAILGAIFVLFSLCYAFAVRDRIPFAAANLRCAAAAIKKHASTYCVAFSMLFLQIVWVAVWAIAALGLANHLNEKDSSTSTRGKPNGSSCNVNSDCMSNKCSATYQCEAASLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWY--STNSAGATGASLKRTLTTSFGSICLGSLIVAILQALRQLAEEARRSGD-AAACIAECILGCLQSLMEYFNRWAFVYVGIYGYKFTDAGKAVIGLFRDRGFDTIINDDLIGNVLLFASLGVGFLCAGLGLVYTYIDPAN--TTFTNSQVIIPIMGLIFGIGISIIPFSVIDSAVATIFVCFAEDPAALQTSHPEHFNELMTEWHRMYPDI 511          
BLAST of NO22G00110 vs. NCBI_GenBank
Match: XP_002906197.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY65598.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 236.5 bits (602), Expect = 1.800e-58
Identity = 146/371 (39.35%), Postives = 215/371 (57.95%), Query Frame = 0
Query:  121 IIKFTLWTSIILSLFSAVLGLVSGQAALVVFGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLLAFLWSVLWSVGVYGVISYFQDE---XXXXXXXXXXXXXXXXXXXXXVWYFLLLVSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLGSICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDI 489
            +I F LW ++ +S   A  G V G   + + GL+ + ++ CY RAV+  IPFA ANLR A  A++        +    ++   W V+W++ V GV +   D+     XXXXXXXXXX         V YF LL+SF+W LQV   V + TVAG V ++W+  + +     + S  RA TTS GSICFG+LIVA L+A++ L E  R+D  +AL C  +C++ CL +  +Y NRWA+ Y+GIYGY F +AG  V+ LF +RG   ++ND+LIG VL   +L VGL+  G+G L+A   + + +   +++ + L   G VVG  V    + V+ ++VA I VCF ED  A   +HPD ++ L   W   +P+I
Sbjct:   65 MILFVLWFNVGISFALAAYGFVIGNIFIAIIGLIIALLNLCYARAVQHRIPFAVANLRVAEGAISKHTSTYIVSVVFTIIQIGWVVIWAMAVLGVANKIADDNPSSTXXXXXXXXXXTYKQSGGSYVAYFFLLLSFYWGLQVFKNVAHTTVAGTVATFWY--QSESMGATAASLKRATTTSFGSICFGSLIVAFLQALRALAESGRQD-GSALACFAECILGCLQSLMEYFNRWAYVYVGIYGYKFTQAGKAVFELFKQRGFDAIINDDLIGNVLGFAALGVGLICAGVGALIA---ETTDVVSFQNSTATLAILGLVVGIGVAVTPLAVIDSSVATIFVCFAEDPAAFQHSHPDLYAPLVQEWHNLYPEI 429          
The following BLAST results are available for this feature:
BLAST of NO22G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20427.11.600e-7582.66Choline transporter [Nannochloropsis gaditana][more]
GAX92879.18.700e-6634.74Hypothetical protein PINS_000783 [Pythium insidios... [more]
XP_024584919.12.100e-6435.73hypothetical protein PPTG_14520 [Plasmopara halste... [more]
ETI40021.14.000e-6336.64hypothetical protein F443_14464 [Phytophthora para... [more]
XP_008910115.11.200e-6236.64hypothetical protein PPTG_14520 [Phytophthora para... [more]
KUF81700.11.200e-6236.64Metal transporter CNNM4 [Phytophthora nicotianae][more]
XP_012199058.13.400e-6231.46hypothetical protein SPRG_19805 [Saprolegnia paras... [more]
OQS02555.11.600e-5931.54hypothetical protein THRCLA_05080 [Thraustotheca c... [more]
XP_008606249.11.800e-5833.42hypothetical protein SDRG_02440 [Saprolegnia dicli... [more]
XP_002906197.11.800e-5839.35conserved hypothetical protein [Phytophthora infes... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR025ncniR025Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR115ngnoR115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00110.1NO22G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_101496g2gene9978Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00110.1NO22G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00110 ID=NO22G00110|Name=NO22G00110|organism=Nannochloropsis oceanica|type=gene|length=3670bp
GCGGAAACGACATCGCCATCATCGCTCGTGTGATGCCTTCTTTTTCGATC
TCCCTTCTGTCTACAGACACACACGCGCACAAACACATCAGCAAACAACG
GTGCCTCCTCGTCACGATGCGTTGAGCCTCGGTCAGCCCTTGTTGTGCCT
CTGCTTTAGAAGGCAATCGTGGAGCGTGGGTATCAATAACCTCACGGCCT
CACAGACAGGCACGCCAAACTCGCTCGCTGGAATCTTATGCCCCTGCAAT
AATACGGCCCCCCCTCTCTCCCTTCACGACAGCTCTCGCCATGATCGACA
AGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAATGGTTACGCT
TCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTGCCCATGCCAC
CGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCTGCCTTCATTC
TAAATCTTGgtacattcacgtttgtgtgttggtggatgggagggttgggg
aacttatgtttcggttcatcgaccttaagtctctctgcccttcaccctcc
ctccctcccgtcctcccacgtagGAGTCATTGTCTGGTTGGCCGCAGACT
ATGGAGCCGCCGCGCTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCG
GCCGTCAAGACGCATGACGgtgagacggggggagagaaggagggagggag
ggaggtaggaaggaaggatggaagtaacgattgacttggctcggttagct
tttggtgacgatggtgtgtacagcttcgaatcttcgaattatggtttata
agtatgtataaatcatgatcatgatatatccactcatagcgtctgaccat
gttatgactagaagcaagcatcatggacgcactgaacgtctacagcacaa
tcaaggtagcatgcatcaattcgtatttacacttttcttcccctcctccc
tccctccctccctccctccccccttcacctcacctcagGGCACCCGCTCA
TCGTCCTGTGTTCAGCCCTGGCGGCAATTGCGGGCGTACTAGCGGGTGGC
TGGATGACATTTATGATCAAGAAAGCAGCGGACATTATTAAgttagtaaa
aggaggaaaaattcccagaatctgtatcaccttcccactcaccttccttc
ccttctgccctccctccctccttccttctagGTTCACATTGTGGACGTCC
ATCATCCTCTCCCTCTTCTCCGCGGTGCTAGGGCTGGTGAGTGGACAGGC
CGCCCTGGTCGTCTTCGGCCTCCTCTCTTCGgtaagcccgagccctcctt
ccctccctccctccctccctccttccctccctccctccctccctccttcc
ctccctccctccctccctccctccctccctcatcccttctggtgccgtcc
actctcacgcatttcaatccctccctccctccttccctccttccctccct
ccctccctccctccctccctccccccagGCCATCTCCTTCTGCTACATGC
GCGCCGTAAAGCGCTTCATCCCCTTCGCTGCTGCGAACCTCCGTGCCGCC
ACCAGTGCAGTCAATGACTTCTTCCCTGTCATGTACGCCGCCTACTTCCT
CCTCCTCCTCGCATTCCTGTGGTCTGTGCTCTGGTCCGTCGGGGTTTATG
GCGTCATTTCTTACTTCCAGGATGAGAGGAACGACGAGGCGGCGCAGGAG
GGAGGGGGGGAGGGCGGGGACGAGGGAGGGGTGGCCGGCGTGTGGTATTT
CCTCTTGTTGGTTAGCTTCTTTTGGACGTTGCAGgtagggagggagagag
agcgggagggcgggagggcgggagagagggagagagggaagggggggggt
ggggccagtcatccgaccgcgagtcatgttctcatcccttctctccctcc
cttcctccctccctcccttgccagGTGGTGGGTGGGGTTTTGAATTGTAC
GGTGGCGGGTGTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAG
CCAACGTCGTCTCGgtacgccgttccctccctccctccctccttccctcc
ctctctccttccctaccctcctctgtcttgggtacttatcctccctccct
cctcactcactccctccctccctccctccctccctccctccctccgtccc
tccgtccctccctccgtccctccgtccctccctccctccctccctccctc
cctccctccctccctccctccctccctccctccctccctccctccctccc
tccctccctccctccctccctccctccctccccctagGGGTCCTTCTCCC
GGGCCGCCACTACGTCCTTGGGCTCCATCTGCTTCGGTGCCTTGATCGTT
GCCGTGCTGGAGGCGATGAAGgtaggcctcttccctccctccctccctcc
ctccctctctccctccctcgggcctactcgcttcgatgcatcggcagtga
ccatgtcactcgttccgcatccctttcataatttcttcctccttctgtcc
ttcctccctccctccctccctctctccctccctccttctctcccttcctt
ccttccgttttcagACGCTCGTCGAAAAAGCGCGCGAAGACCGGGACAAC
GCCCTCAAGTGCCTCGTCGACTGCCTCATCTCGTGCTTGGACGCCGCGGC
CCAATACTTGAACCGCTGGGCCTTCACCTACATCGGCATTTACGGCTACT
CCTTCATGGAGGCCGGGCACAAGgtttgttccctccctccctccctccct
ccctccctccctctctccaatcctcttgggtcttgacctacatcagtgtc
gacgaggatttcttcctggaggctgggaccaaaggagaagggaaggaggt
ctggagggagggaggtttaaatgacatttattcatttatttttttcaagt
atcaacccgtggttcctccctccctccctccctccatccacccctcccgc
ctcctccacctccgcagGTGTACAACCTGTTCACCCGCCGCGGGCTCACC
ACCCTCCTCAACGATAACCTCATCGGCCGTGTCCTCTTCCTCGGCTCCCT
CATGGTCGGTCTCCTCACCTGCGGCATAGGCGTACTCCTGGCCTTCGCCC
TCCAACACTCCTACCTTAAGGACGTGGAGGACGCTCCCTCCCTTTTGGGT
GGGGCGGGCTTTGTGgtacgtctctccctccctccctccctccctccttc
cctccctccctccctccctccctccctccctccttccctccctccctcct
tccctccctccctccctctccctctctttctctctccctctccctcactc
tctccttcccttcctcccattcgcagGTCGGTTTCTTCGTAACGGACGTG
ATGATGAACGTTGTCTCCGCGGCCGTGGCTGCCATTCTCGTCTGCTTCCT
GGAGGACTCCCAAGCGCTGGCCATCACACACCCTGACTACCACTCATACC
TGTCGGCGGCATGGTCGATGCGTTTCCCTGACATTAATTGGTAGTCTCGC
ACCTACCCTTCCTTCCCTCCTTCCCTCCTTTCCTCCTTCCCCCGCACTCT
CGTTACTTCATCAAGCCTTCTTTTCATTGGGGGAATCGGCCGAAAGGAGG
GAAAGAGAGACGCTTGATGAGAGAATGAAAGAGAAGGGAAGAAAGAGAAG
GAGGGAGGGAGGGAGGGAGG
back to top

protein sequence of NO22G00110.1

>NO22G00110.1-protein ID=NO22G00110.1-protein|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MIDKRGLLSSEAVEDGNGYASFPPSGGAAPLPSAHATGEKRGCRDPLFLA
AFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIVLCSALA
AIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVV
FGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLL
AFLWSVLWSVGVYGVISYFQDERNDEAAQEGGGEGGDEGGVAGVWYFLLL
VSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLG
SICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNR
WAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVG
LLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSA
AVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW*
back to top
Synonyms
Publications