NO22G00110.1, NO22G00110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00110.1
Unique NameNO22G00110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1939
Alignment locationchr22:42925..46594 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:42925..46594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO22G00110.1 vs.
Match: EWM20427.1 (Choline transporter [Nannochloropsis gaditana])

HSP 1 Score: 317.4 bits (812), Expect = 7.800e-83
Identity = 152/173 (87.86%), Postives = 167/173 (96.53%), Query Frame = 0
Query:  318 LVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW 491
            +VE AR++RDNALKCL+DCLISCLD+ AQYLNRWA+TYIGIYG+SF+EAGHKVYNLF RRGLT LLNDNL+GRVLFLG+LMVGL+TCG+GVLLAF LQHSYLKDVE+APSLLGGAGFVVGFFVTDVMMNVVSAAVAA+LVCFLEDSQALAITHPDYHSYL AAW+MRFPDINW
Sbjct:    1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173          
The following BLAST results are available for this feature:
BLAST of NO22G00110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20427.17.800e-8387.86Choline transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00110NO22G00110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00110.1NO22G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00110.1.cds1NO22G00110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds2NO22G00110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds3NO22G00110.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds4NO22G00110.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds5NO22G00110.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds6NO22G00110.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds7NO22G00110.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds8NO22G00110.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds9NO22G00110.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00110.1.cds10NO22G00110.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp
GCGGAAACGACATCGCCATCATCGCTCGTGTGATGCCTTCTTTTTCGATC
TCCCTTCTGTCTACAGACACACACGCGCACAAACACATCAGCAAACAACG
GTGCCTCCTCGTCACGATGCGTTGAGCCTCGGTCAGCCCTTGTTGTGCCT
CTGCTTTAGAAGGCAATCGTGGAGCGTGGGTATCAATAACCTCACGGCCT
CACAGACAGGCACGCCAAACTCGCTCGCTGGAATCTTATGCCCCTGCAAT
AATACGGCCCCCCCTCTCTCCCTTCACGACAGCTCTCGCCATGATCGACA
AGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAATGGTTACGCT
TCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTGCCCATGCCAC
CGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCTGCCTTCATTC
TAAATCTTGGAGTCATTGTCTGGTTGGCCGCAGACTATGGAGCCGCCGCG
CTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCGGCCGTCAAGACGCA
TGACGGGCACCCGCTCATCGTCCTGTGTTCAGCCCTGGCGGCAATTGCGG
GCGTACTAGCGGGTGGCTGGATGACATTTATGATCAAGAAAGCAGCGGAC
ATTATTAAGTTCACATTGTGGACGTCCATCATCCTCTCCCTCTTCTCCGC
GGTGCTAGGGCTGGTGAGTGGACAGGCCGCCCTGGTCGTCTTCGGCCTCC
TCTCTTCGGCCATCTCCTTCTGCTACATGCGCGCCGTAAAGCGCTTCATC
CCCTTCGCTGCTGCGAACCTCCGTGCCGCCACCAGTGCAGTCAATGACTT
CTTCCCTGTCATGTACGCCGCCTACTTCCTCCTCCTCCTCGCATTCCTGT
GGTCTGTGCTCTGGTCCGTCGGGGTTTATGGCGTCATTTCTTACTTCCAG
GATGAGAGGAACGACGAGGCGGCGCAGGAGGGAGGGGGGGAGGGCGGGGA
CGAGGGAGGGGTGGCCGGCGTGTGGTATTTCCTCTTGTTGGTTAGCTTCT
TTTGGACGTTGCAGGTGGTGGGTGGGGTTTTGAATTGTACGGTGGCGGGT
GTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAGCCAACGTCGT
CTCGGGGTCCTTCTCCCGGGCCGCCACTACGTCCTTGGGCTCCATCTGCT
TCGGTGCCTTGATCGTTGCCGTGCTGGAGGCGATGAAGACGCTCGTCGAA
AAAGCGCGCGAAGACCGGGACAACGCCCTCAAGTGCCTCGTCGACTGCCT
CATCTCGTGCTTGGACGCCGCGGCCCAATACTTGAACCGCTGGGCCTTCA
CCTACATCGGCATTTACGGCTACTCCTTCATGGAGGCCGGGCACAAGGTG
TACAACCTGTTCACCCGCCGCGGGCTCACCACCCTCCTCAACGATAACCT
CATCGGCCGTGTCCTCTTCCTCGGCTCCCTCATGGTCGGTCTCCTCACCT
GCGGCATAGGCGTACTCCTGGCCTTCGCCCTCCAACACTCCTACCTTAAG
GACGTGGAGGACGCTCCCTCCCTTTTGGGTGGGGCGGGCTTTGTGGTCGG
TTTCTTCGTAACGGACGTGATGATGAACGTTGTCTCCGCGGCCGTGGCTG
CCATTCTCGTCTGCTTCCTGGAGGACTCCCAAGCGCTGGCCATCACACAC
CCTGACTACCACTCATACCTGTCGGCGGCATGGTCGATGCGTTTCCCTGA
CATTAATTGGTAGTCTCGCACCTACCCTTCCTTCCCTCCTTCCCTCCTTT
CCTCCTTCCCCCGCACTCTCGTTACTTCATCAAGCCTTCTTTTCATTGGG
GGAATCGGCCGAAAGGAGGGAAAGAGAGACGCTTGATGAGAGAATGAAAG
AGAAGGGAAGAAAGAGAAGGAGGGAGGGAGGGAGGGAGG
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protein sequence of NO22G00110.1

>NO22G00110.1-protein ID=NO22G00110.1-protein|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MIDKRGLLSSEAVEDGNGYASFPPSGGAAPLPSAHATGEKRGCRDPLFLA
AFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIVLCSALA
AIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVV
FGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLL
AFLWSVLWSVGVYGVISYFQDERNDEAAQEGGGEGGDEGGVAGVWYFLLL
VSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLG
SICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNR
WAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVG
LLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSA
AVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW*
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mRNA from alignment at chr22:42925..46594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3670bp|location=Sequence derived from alignment at chr22:42925..46594+ (Nannochloropsis oceanica)
GCGGAAACGACATCGCCATCATCGCTCGTGTGATGCCTTCTTTTTCGATC TCCCTTCTGTCTACAGACACACACGCGCACAAACACATCAGCAAACAACG GTGCCTCCTCGTCACGATGCGTTGAGCCTCGGTCAGCCCTTGTTGTGCCT CTGCTTTAGAAGGCAATCGTGGAGCGTGGGTATCAATAACCTCACGGCCT CACAGACAGGCACGCCAAACTCGCTCGCTGGAATCTTATGCCCCTGCAAT AATACGGCCCCCCCTCTCTCCCTTCACGACAGCTCTCGCCATGATCGACA AGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAATGGTTACGCT TCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTGCCCATGCCAC CGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCTGCCTTCATTC TAAATCTTGGTACATTCACGTTTGTGTGTTGGTGGATGGGAGGGTTGGGG AACTTATGTTTCGGTTCATCGACCTTAAGTCTCTCTGCCCTTCACCCTCC CTCCCTCCCGTCCTCCCACGTAGGAGTCATTGTCTGGTTGGCCGCAGACT ATGGAGCCGCCGCGCTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCG GCCGTCAAGACGCATGACGGTGAGACGGGGGGAGAGAAGGAGGGAGGGAG GGAGGTAGGAAGGAAGGATGGAAGTAACGATTGACTTGGCTCGGTTAGCT TTTGGTGACGATGGTGTGTACAGCTTCGAATCTTCGAATTATGGTTTATA AGTATGTATAAATCATGATCATGATATATCCACTCATAGCGTCTGACCAT GTTATGACTAGAAGCAAGCATCATGGACGCACTGAACGTCTACAGCACAA TCAAGGTAGCATGCATCAATTCGTATTTACACTTTTCTTCCCCTCCTCCC TCCCTCCCTCCCTCCCTCCCCCCTTCACCTCACCTCAGGGCACCCGCTCA TCGTCCTGTGTTCAGCCCTGGCGGCAATTGCGGGCGTACTAGCGGGTGGC TGGATGACATTTATGATCAAGAAAGCAGCGGACATTATTAAGTTAGTAAA AGGAGGAAAAATTCCCAGAATCTGTATCACCTTCCCACTCACCTTCCTTC CCTTCTGCCCTCCCTCCCTCCTTCCTTCTAGGTTCACATTGTGGACGTCC ATCATCCTCTCCCTCTTCTCCGCGGTGCTAGGGCTGGTGAGTGGACAGGC CGCCCTGGTCGTCTTCGGCCTCCTCTCTTCGGTAAGCCCGAGCCCTCCTT CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCATCCCTTCTGGTGCCGTCC ACTCTCACGCATTTCAATCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCCT CCCTCCCTCCCTCCCTCCCTCCCCCCAGGCCATCTCCTTCTGCTACATGC GCGCCGTAAAGCGCTTCATCCCCTTCGCTGCTGCGAACCTCCGTGCCGCC ACCAGTGCAGTCAATGACTTCTTCCCTGTCATGTACGCCGCCTACTTCCT CCTCCTCCTCGCATTCCTGTGGTCTGTGCTCTGGTCCGTCGGGGTTTATG GCGTCATTTCTTACTTCCAGGATGAGAGGAACGACGAGGCGGCGCAGGAG GGAGGGGGGGAGGGCGGGGACGAGGGAGGGGTGGCCGGCGTGTGGTATTT CCTCTTGTTGGTTAGCTTCTTTTGGACGTTGCAGGTAGGGAGGGAGAGAG AGCGGGAGGGCGGGAGGGCGGGAGAGAGGGAGAGAGGGAAGGGGGGGGGT GGGGCCAGTCATCCGACCGCGAGTCATGTTCTCATCCCTTCTCTCCCTCC CTTCCTCCCTCCCTCCCTTGCCAGGTGGTGGGTGGGGTTTTGAATTGTAC GGTGGCGGGTGTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAG CCAACGTCGTCTCGGTACGCCGTTCCCTCCCTCCCTCCCTCCTTCCCTCC CTCTCTCCTTCCCTACCCTCCTCTGTCTTGGGTACTTATCCTCCCTCCCT CCTCACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTCCC TCCGTCCCTCCCTCCGTCCCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTAGGGGTCCTTCTCCC GGGCCGCCACTACGTCCTTGGGCTCCATCTGCTTCGGTGCCTTGATCGTT GCCGTGCTGGAGGCGATGAAGGTAGGCCTCTTCCCTCCCTCCCTCCCTCC CTCCCTCTCTCCCTCCCTCGGGCCTACTCGCTTCGATGCATCGGCAGTGA CCATGTCACTCGTTCCGCATCCCTTTCATAATTTCTTCCTCCTTCTGTCC TTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTTCTCTCCCTTCCTT CCTTCCGTTTTCAGACGCTCGTCGAAAAAGCGCGCGAAGACCGGGACAAC GCCCTCAAGTGCCTCGTCGACTGCCTCATCTCGTGCTTGGACGCCGCGGC CCAATACTTGAACCGCTGGGCCTTCACCTACATCGGCATTTACGGCTACT CCTTCATGGAGGCCGGGCACAAGGTTTGTTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCTCTCCAATCCTCTTGGGTCTTGACCTACATCAGTGTC GACGAGGATTTCTTCCTGGAGGCTGGGACCAAAGGAGAAGGGAAGGAGGT CTGGAGGGAGGGAGGTTTAAATGACATTTATTCATTTATTTTTTTCAAGT ATCAACCCGTGGTTCCTCCCTCCCTCCCTCCCTCCATCCACCCCTCCCGC CTCCTCCACCTCCGCAGGTGTACAACCTGTTCACCCGCCGCGGGCTCACC ACCCTCCTCAACGATAACCTCATCGGCCGTGTCCTCTTCCTCGGCTCCCT CATGGTCGGTCTCCTCACCTGCGGCATAGGCGTACTCCTGGCCTTCGCCC TCCAACACTCCTACCTTAAGGACGTGGAGGACGCTCCCTCCCTTTTGGGT GGGGCGGGCTTTGTGGTACGTCTCTCCCTCCCTCCCTCCCTCCCTCCTTC CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCT TCCCTCCCTCCCTCCCTCTCCCTCTCTTTCTCTCTCCCTCTCCCTCACTC TCTCCTTCCCTTCCTCCCATTCGCAGGTCGGTTTCTTCGTAACGGACGTG ATGATGAACGTTGTCTCCGCGGCCGTGGCTGCCATTCTCGTCTGCTTCCT GGAGGACTCCCAAGCGCTGGCCATCACACACCCTGACTACCACTCATACC TGTCGGCGGCATGGTCGATGCGTTTCCCTGACATTAATTGGTAGTCTCGC ACCTACCCTTCCTTCCCTCCTTCCCTCCTTTCCTCCTTCCCCCGCACTCT CGTTACTTCATCAAGCCTTCTTTTCATTGGGGGAATCGGCCGAAAGGAGG GAAAGAGAGACGCTTGATGAGAGAATGAAAGAGAAGGGAAGAAAGAGAAG GAGGGAGGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at chr22:42925..46594+

>NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr22:42925..46594+ (Nannochloropsis oceanica)
ATGATCGACAAGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAA
TGGTTACGCTTCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTG
CCCATGCCACCGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCT
GCCTTCATTCTAAATCTTGGAGTCATTGTCTGGTTGGCCGCAGACTATGG
AGCCGCCGCGCTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCGGCCG
TCAAGACGCATGACGGGCACCCGCTCATCGTCCTGTGTTCAGCCCTGGCG
GCAATTGCGGGCGTACTAGCGGGTGGCTGGATGACATTTATGATCAAGAA
AGCAGCGGACATTATTAAGTTCACATTGTGGACGTCCATCATCCTCTCCC
TCTTCTCCGCGGTGCTAGGGCTGGTGAGTGGACAGGCCGCCCTGGTCGTC
TTCGGCCTCCTCTCTTCGGCCATCTCCTTCTGCTACATGCGCGCCGTAAA
GCGCTTCATCCCCTTCGCTGCTGCGAACCTCCGTGCCGCCACCAGTGCAG
TCAATGACTTCTTCCCTGTCATGTACGCCGCCTACTTCCTCCTCCTCCTC
GCATTCCTGTGGTCTGTGCTCTGGTCCGTCGGGGTTTATGGCGTCATTTC
TTACTTCCAGGATGAGAGGAACGACGAGGCGGCGCAGGAGGGAGGGGGGG
AGGGCGGGGACGAGGGAGGGGTGGCCGGCGTGTGGTATTTCCTCTTGTTG
GTTAGCTTCTTTTGGACGTTGCAGGTGGTGGGTGGGGTTTTGAATTGTAC
GGTGGCGGGTGTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAG
CCAACGTCGTCTCGGGGTCCTTCTCCCGGGCCGCCACTACGTCCTTGGGC
TCCATCTGCTTCGGTGCCTTGATCGTTGCCGTGCTGGAGGCGATGAAGAC
GCTCGTCGAAAAAGCGCGCGAAGACCGGGACAACGCCCTCAAGTGCCTCG
TCGACTGCCTCATCTCGTGCTTGGACGCCGCGGCCCAATACTTGAACCGC
TGGGCCTTCACCTACATCGGCATTTACGGCTACTCCTTCATGGAGGCCGG
GCACAAGGTGTACAACCTGTTCACCCGCCGCGGGCTCACCACCCTCCTCA
ACGATAACCTCATCGGCCGTGTCCTCTTCCTCGGCTCCCTCATGGTCGGT
CTCCTCACCTGCGGCATAGGCGTACTCCTGGCCTTCGCCCTCCAACACTC
CTACCTTAAGGACGTGGAGGACGCTCCCTCCCTTTTGGGTGGGGCGGGCT
TTGTGGTCGGTTTCTTCGTAACGGACGTGATGATGAACGTTGTCTCCGCG
GCCGTGGCTGCCATTCTCGTCTGCTTCCTGGAGGACTCCCAAGCGCTGGC
CATCACACACCCTGACTACCACTCATACCTGTCGGCGGCATGGTCGATGC
GTTTCCCTGACATTAATTGGTAG
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Synonyms
Publications