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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr22 | genome | chr22:42925..46594 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO22G00110.1 vs.
Match: EWM20427.1 (Choline transporter [Nannochloropsis gaditana]) HSP 1 Score: 317.4 bits (812), Expect = 7.800e-83 Identity = 152/173 (87.86%), Postives = 167/173 (96.53%), Query Frame = 0
Query: 318 LVEKAREDRDNALKCLVDCLISCLDAAAQYLNRWAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVGLLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW 491
+VE AR++RDNALKCL+DCLISCLD+ AQYLNRWA+TYIGIYG+SF+EAGHKVYNLF RRGLT LLNDNL+GRVLFLG+LMVGL+TCG+GVLLAF LQHSYLKDVE+APSLLGGAGFVVGFFVTDVMMNVVSAAVAA+LVCFLEDSQALAITHPDYHSYL AAW+MRFPDINW
Sbjct: 1 MVENARQERDNALKCLLDCLISCLDSLAQYLNRWAYTYIGIYGHSFVEAGHKVYNLFVRRGLTALLNDNLVGRVLFLGALMVGLVTCGLGVLLAFILQHSYLKDVENAPSLLGGAGFVVGFFVTDVMMNVVSAAVAAVLVCFLEDSQALAITHPDYHSYLVAAWAMRFPDINW 173
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp GCGGAAACGACATCGCCATCATCGCTCGTGTGATGCCTTCTTTTTCGATC TCCCTTCTGTCTACAGACACACACGCGCACAAACACATCAGCAAACAACG GTGCCTCCTCGTCACGATGCGTTGAGCCTCGGTCAGCCCTTGTTGTGCCT CTGCTTTAGAAGGCAATCGTGGAGCGTGGGTATCAATAACCTCACGGCCT CACAGACAGGCACGCCAAACTCGCTCGCTGGAATCTTATGCCCCTGCAAT AATACGGCCCCCCCTCTCTCCCTTCACGACAGCTCTCGCCATGATCGACA AGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAATGGTTACGCT TCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTGCCCATGCCAC CGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCTGCCTTCATTC TAAATCTTGGAGTCATTGTCTGGTTGGCCGCAGACTATGGAGCCGCCGCG CTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCGGCCGTCAAGACGCA TGACGGGCACCCGCTCATCGTCCTGTGTTCAGCCCTGGCGGCAATTGCGG GCGTACTAGCGGGTGGCTGGATGACATTTATGATCAAGAAAGCAGCGGAC ATTATTAAGTTCACATTGTGGACGTCCATCATCCTCTCCCTCTTCTCCGC GGTGCTAGGGCTGGTGAGTGGACAGGCCGCCCTGGTCGTCTTCGGCCTCC TCTCTTCGGCCATCTCCTTCTGCTACATGCGCGCCGTAAAGCGCTTCATC CCCTTCGCTGCTGCGAACCTCCGTGCCGCCACCAGTGCAGTCAATGACTT CTTCCCTGTCATGTACGCCGCCTACTTCCTCCTCCTCCTCGCATTCCTGT GGTCTGTGCTCTGGTCCGTCGGGGTTTATGGCGTCATTTCTTACTTCCAG GATGAGAGGAACGACGAGGCGGCGCAGGAGGGAGGGGGGGAGGGCGGGGA CGAGGGAGGGGTGGCCGGCGTGTGGTATTTCCTCTTGTTGGTTAGCTTCT TTTGGACGTTGCAGGTGGTGGGTGGGGTTTTGAATTGTACGGTGGCGGGT GTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAGCCAACGTCGT CTCGGGGTCCTTCTCCCGGGCCGCCACTACGTCCTTGGGCTCCATCTGCT TCGGTGCCTTGATCGTTGCCGTGCTGGAGGCGATGAAGACGCTCGTCGAA AAAGCGCGCGAAGACCGGGACAACGCCCTCAAGTGCCTCGTCGACTGCCT CATCTCGTGCTTGGACGCCGCGGCCCAATACTTGAACCGCTGGGCCTTCA CCTACATCGGCATTTACGGCTACTCCTTCATGGAGGCCGGGCACAAGGTG TACAACCTGTTCACCCGCCGCGGGCTCACCACCCTCCTCAACGATAACCT CATCGGCCGTGTCCTCTTCCTCGGCTCCCTCATGGTCGGTCTCCTCACCT GCGGCATAGGCGTACTCCTGGCCTTCGCCCTCCAACACTCCTACCTTAAG GACGTGGAGGACGCTCCCTCCCTTTTGGGTGGGGCGGGCTTTGTGGTCGG TTTCTTCGTAACGGACGTGATGATGAACGTTGTCTCCGCGGCCGTGGCTG CCATTCTCGTCTGCTTCCTGGAGGACTCCCAAGCGCTGGCCATCACACAC CCTGACTACCACTCATACCTGTCGGCGGCATGGTCGATGCGTTTCCCTGA CATTAATTGGTAGTCTCGCACCTACCCTTCCTTCCCTCCTTCCCTCCTTT CCTCCTTCCCCCGCACTCTCGTTACTTCATCAAGCCTTCTTTTCATTGGG GGAATCGGCCGAAAGGAGGGAAAGAGAGACGCTTGATGAGAGAATGAAAG AGAAGGGAAGAAAGAGAAGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of NO22G00110.1 >NO22G00110.1-protein ID=NO22G00110.1-protein|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp MIDKRGLLSSEAVEDGNGYASFPPSGGAAPLPSAHATGEKRGCRDPLFLA AFILNLGVIVWLAADYGAAALKEAPKPDAENPAVKTHDGHPLIVLCSALA AIAGVLAGGWMTFMIKKAADIIKFTLWTSIILSLFSAVLGLVSGQAALVV FGLLSSAISFCYMRAVKRFIPFAAANLRAATSAVNDFFPVMYAAYFLLLL AFLWSVLWSVGVYGVISYFQDERNDEAAQEGGGEGGDEGGVAGVWYFLLL VSFFWTLQVVGGVLNCTVAGVVGSWWFIPKPDQANVVSGSFSRAATTSLG SICFGALIVAVLEAMKTLVEKAREDRDNALKCLVDCLISCLDAAAQYLNR WAFTYIGIYGYSFMEAGHKVYNLFTRRGLTTLLNDNLIGRVLFLGSLMVG LLTCGIGVLLAFALQHSYLKDVEDAPSLLGGAGFVVGFFVTDVMMNVVSA AVAAILVCFLEDSQALAITHPDYHSYLSAAWSMRFPDINW* back to topmRNA from alignment at chr22:42925..46594+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3670bp|location=Sequence derived from alignment at chr22:42925..46594+ (Nannochloropsis oceanica) GCGGAAACGACATCGCCATCATCGCTCGTGTGATGCCTTCTTTTTCGATC
TCCCTTCTGTCTACAGACACACACGCGCACAAACACATCAGCAAACAACG
GTGCCTCCTCGTCACGATGCGTTGAGCCTCGGTCAGCCCTTGTTGTGCCT
CTGCTTTAGAAGGCAATCGTGGAGCGTGGGTATCAATAACCTCACGGCCT
CACAGACAGGCACGCCAAACTCGCTCGCTGGAATCTTATGCCCCTGCAAT
AATACGGCCCCCCCTCTCTCCCTTCACGACAGCTCTCGCCATGATCGACA
AGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAATGGTTACGCT
TCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTGCCCATGCCAC
CGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCTGCCTTCATTC
TAAATCTTGGTACATTCACGTTTGTGTGTTGGTGGATGGGAGGGTTGGGG
AACTTATGTTTCGGTTCATCGACCTTAAGTCTCTCTGCCCTTCACCCTCC
CTCCCTCCCGTCCTCCCACGTAGGAGTCATTGTCTGGTTGGCCGCAGACT
ATGGAGCCGCCGCGCTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCG
GCCGTCAAGACGCATGACGGTGAGACGGGGGGAGAGAAGGAGGGAGGGAG
GGAGGTAGGAAGGAAGGATGGAAGTAACGATTGACTTGGCTCGGTTAGCT
TTTGGTGACGATGGTGTGTACAGCTTCGAATCTTCGAATTATGGTTTATA
AGTATGTATAAATCATGATCATGATATATCCACTCATAGCGTCTGACCAT
GTTATGACTAGAAGCAAGCATCATGGACGCACTGAACGTCTACAGCACAA
TCAAGGTAGCATGCATCAATTCGTATTTACACTTTTCTTCCCCTCCTCCC
TCCCTCCCTCCCTCCCTCCCCCCTTCACCTCACCTCAGGGCACCCGCTCA
TCGTCCTGTGTTCAGCCCTGGCGGCAATTGCGGGCGTACTAGCGGGTGGC
TGGATGACATTTATGATCAAGAAAGCAGCGGACATTATTAAGTTAGTAAA
AGGAGGAAAAATTCCCAGAATCTGTATCACCTTCCCACTCACCTTCCTTC
CCTTCTGCCCTCCCTCCCTCCTTCCTTCTAGGTTCACATTGTGGACGTCC
ATCATCCTCTCCCTCTTCTCCGCGGTGCTAGGGCTGGTGAGTGGACAGGC
CGCCCTGGTCGTCTTCGGCCTCCTCTCTTCGGTAAGCCCGAGCCCTCCTT
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCATCCCTTCTGGTGCCGTCC
ACTCTCACGCATTTCAATCCCTCCCTCCCTCCTTCCCTCCTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCCCCAGGCCATCTCCTTCTGCTACATGC
GCGCCGTAAAGCGCTTCATCCCCTTCGCTGCTGCGAACCTCCGTGCCGCC
ACCAGTGCAGTCAATGACTTCTTCCCTGTCATGTACGCCGCCTACTTCCT
CCTCCTCCTCGCATTCCTGTGGTCTGTGCTCTGGTCCGTCGGGGTTTATG
GCGTCATTTCTTACTTCCAGGATGAGAGGAACGACGAGGCGGCGCAGGAG
GGAGGGGGGGAGGGCGGGGACGAGGGAGGGGTGGCCGGCGTGTGGTATTT
CCTCTTGTTGGTTAGCTTCTTTTGGACGTTGCAGGTAGGGAGGGAGAGAG
AGCGGGAGGGCGGGAGGGCGGGAGAGAGGGAGAGAGGGAAGGGGGGGGGT
GGGGCCAGTCATCCGACCGCGAGTCATGTTCTCATCCCTTCTCTCCCTCC
CTTCCTCCCTCCCTCCCTTGCCAGGTGGTGGGTGGGGTTTTGAATTGTAC
GGTGGCGGGTGTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAG
CCAACGTCGTCTCGGTACGCCGTTCCCTCCCTCCCTCCCTCCTTCCCTCC
CTCTCTCCTTCCCTACCCTCCTCTGTCTTGGGTACTTATCCTCCCTCCCT
CCTCACTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTCCC
TCCGTCCCTCCCTCCGTCCCTCCGTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTAGGGGTCCTTCTCCC
GGGCCGCCACTACGTCCTTGGGCTCCATCTGCTTCGGTGCCTTGATCGTT
GCCGTGCTGGAGGCGATGAAGGTAGGCCTCTTCCCTCCCTCCCTCCCTCC
CTCCCTCTCTCCCTCCCTCGGGCCTACTCGCTTCGATGCATCGGCAGTGA
CCATGTCACTCGTTCCGCATCCCTTTCATAATTTCTTCCTCCTTCTGTCC
TTCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTTCTCTCCCTTCCTT
CCTTCCGTTTTCAGACGCTCGTCGAAAAAGCGCGCGAAGACCGGGACAAC
GCCCTCAAGTGCCTCGTCGACTGCCTCATCTCGTGCTTGGACGCCGCGGC
CCAATACTTGAACCGCTGGGCCTTCACCTACATCGGCATTTACGGCTACT
CCTTCATGGAGGCCGGGCACAAGGTTTGTTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTCTCCAATCCTCTTGGGTCTTGACCTACATCAGTGTC
GACGAGGATTTCTTCCTGGAGGCTGGGACCAAAGGAGAAGGGAAGGAGGT
CTGGAGGGAGGGAGGTTTAAATGACATTTATTCATTTATTTTTTTCAAGT
ATCAACCCGTGGTTCCTCCCTCCCTCCCTCCCTCCATCCACCCCTCCCGC
CTCCTCCACCTCCGCAGGTGTACAACCTGTTCACCCGCCGCGGGCTCACC
ACCCTCCTCAACGATAACCTCATCGGCCGTGTCCTCTTCCTCGGCTCCCT
CATGGTCGGTCTCCTCACCTGCGGCATAGGCGTACTCCTGGCCTTCGCCC
TCCAACACTCCTACCTTAAGGACGTGGAGGACGCTCCCTCCCTTTTGGGT
GGGGCGGGCTTTGTGGTACGTCTCTCCCTCCCTCCCTCCCTCCCTCCTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCT
TCCCTCCCTCCCTCCCTCTCCCTCTCTTTCTCTCTCCCTCTCCCTCACTC
TCTCCTTCCCTTCCTCCCATTCGCAGGTCGGTTTCTTCGTAACGGACGTG
ATGATGAACGTTGTCTCCGCGGCCGTGGCTGCCATTCTCGTCTGCTTCCT
GGAGGACTCCCAAGCGCTGGCCATCACACACCCTGACTACCACTCATACC
TGTCGGCGGCATGGTCGATGCGTTTCCCTGACATTAATTGGTAGTCTCGC
ACCTACCCTTCCTTCCCTCCTTCCCTCCTTTCCTCCTTCCCCCGCACTCT
CGTTACTTCATCAAGCCTTCTTTTCATTGGGGGAATCGGCCGAAAGGAGG
GAAAGAGAGACGCTTGATGAGAGAATGAAAGAGAAGGGAAGAAAGAGAAG
GAGGGAGGGAGGGAGGGAGG back to topCoding sequence (CDS) from alignment at chr22:42925..46594+ >NO22G00110.1 ID=NO22G00110.1|Name=NO22G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr22:42925..46594+ (Nannochloropsis oceanica) ATGATCGACAAGCGTGGTCTTCTCTCATCGGAAGCTGTGGAGGACGGCAA TGGTTACGCTTCCTTTCCCCCCTCAGGCGGCGCGGCTCCGCTTCCATCTG CCCATGCCACCGGGGAGAAAAGAGGCTGTCGGGACCCGCTTTTCCTCGCT GCCTTCATTCTAAATCTTGGAGTCATTGTCTGGTTGGCCGCAGACTATGG AGCCGCCGCGCTCAAAGAAGCTCCAAAGCCCGATGCCGAGAATCCGGCCG TCAAGACGCATGACGGGCACCCGCTCATCGTCCTGTGTTCAGCCCTGGCG GCAATTGCGGGCGTACTAGCGGGTGGCTGGATGACATTTATGATCAAGAA AGCAGCGGACATTATTAAGTTCACATTGTGGACGTCCATCATCCTCTCCC TCTTCTCCGCGGTGCTAGGGCTGGTGAGTGGACAGGCCGCCCTGGTCGTC TTCGGCCTCCTCTCTTCGGCCATCTCCTTCTGCTACATGCGCGCCGTAAA GCGCTTCATCCCCTTCGCTGCTGCGAACCTCCGTGCCGCCACCAGTGCAG TCAATGACTTCTTCCCTGTCATGTACGCCGCCTACTTCCTCCTCCTCCTC GCATTCCTGTGGTCTGTGCTCTGGTCCGTCGGGGTTTATGGCGTCATTTC TTACTTCCAGGATGAGAGGAACGACGAGGCGGCGCAGGAGGGAGGGGGGG AGGGCGGGGACGAGGGAGGGGTGGCCGGCGTGTGGTATTTCCTCTTGTTG GTTAGCTTCTTTTGGACGTTGCAGGTGGTGGGTGGGGTTTTGAATTGTAC GGTGGCGGGTGTAGTGGGCTCGTGGTGGTTCATCCCCAAGCCCGACCAAG CCAACGTCGTCTCGGGGTCCTTCTCCCGGGCCGCCACTACGTCCTTGGGC TCCATCTGCTTCGGTGCCTTGATCGTTGCCGTGCTGGAGGCGATGAAGAC GCTCGTCGAAAAAGCGCGCGAAGACCGGGACAACGCCCTCAAGTGCCTCG TCGACTGCCTCATCTCGTGCTTGGACGCCGCGGCCCAATACTTGAACCGC TGGGCCTTCACCTACATCGGCATTTACGGCTACTCCTTCATGGAGGCCGG GCACAAGGTGTACAACCTGTTCACCCGCCGCGGGCTCACCACCCTCCTCA ACGATAACCTCATCGGCCGTGTCCTCTTCCTCGGCTCCCTCATGGTCGGT CTCCTCACCTGCGGCATAGGCGTACTCCTGGCCTTCGCCCTCCAACACTC CTACCTTAAGGACGTGGAGGACGCTCCCTCCCTTTTGGGTGGGGCGGGCT TTGTGGTCGGTTTCTTCGTAACGGACGTGATGATGAACGTTGTCTCCGCG GCCGTGGCTGCCATTCTCGTCTGCTTCCTGGAGGACTCCCAAGCGCTGGC CATCACACACCCTGACTACCACTCATACCTGTCGGCGGCATGGTCGATGC GTTTCCCTGACATTAATTGGTAG back to top
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