NO22G00050, NO22G00050 (gene) Nannochloropsis oceanica

Overview
NameNO22G00050
Unique NameNO22G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2961
Alignment locationchr22:19256..22216 +

Link to JBrowse

Properties
Property NameValue
DescriptionReplication factor C subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:19256..22216 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0009987cellular process
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C_dom
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
BLAST of NO22G00050 vs. NCBI_GenBank
Match: EWM20422.1 (activator 1 37 kda subunit [Nannochloropsis gaditana])

HSP 1 Score: 589.0 bits (1517), Expect = 1.000e-164
Identity = 303/373 (81.23%), Postives = 326/373 (87.40%), Query Frame = 0
Query:    1 MAAAASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENI---------------------------------GAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            MA AA++++ +   +Q EK + PGLLPWVEKYRPVTL+DVVGN EAIDRLKVVA+DGNMPHMLLAGPPGTGKTSSI+CL+RELLGEE++                                 GAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMT AAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEE+LDRLRQICE+E VGFS+DGLEAVIFTAEGDMRNAINNLQST+SGFGYVNQANVFKVCDQPHPLLMKEVL+LCA SGDLK AQEKLL+VWNLGYSASDI+GTLFKVCRNH TMNEGTKLNFIREIGMVHMR+AEGLNSRTQ+LGLLAKLC+L
Sbjct:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCAL 373          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_005855000.1 (replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526] >EKU21354.1 replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 554.7 bits (1428), Expect = 2.100e-154
Identity = 303/440 (68.86%), Postives = 326/440 (74.09%), Query Frame = 0
Query:    1 MAAAASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPP-------------------------GTGKTSSILCLARELLGEENI---------------------------------GAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADE------------------------------------------ELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            MA AA++++ +   +Q EK + PGLLPWVEKYRPVTL+DVVGN EAIDRLKVVA+DGNMPHMLLAGPP                         GTGKTSSI+CL+RELLGEE++                                 GAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMT AAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADE                                          E+LDRLRQICE+E VGFS+DGLEAVIFTAEGDMRNAINNLQST+SGFGYVNQANVFKVCDQPHPLLMKEVL+LCA SGDLK AQEKLL+VWNLGYSASDI+GTLFKVCRNH TMNEGTKLNFIREIGMVHMR+AEGLNSRTQ+LGLLAKLC+L
Sbjct:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPVRLVARITTFSSSSHILSASLPPLQGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTPAFPFSFVLPLAISTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEILSLPVSLVKSSARTSRGKRVDSLPSRSSPAFPASPSPSIAQEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCAL 440          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: GAX99740.1 (replication factor C subunit 2 [Pythium insidiosum])

HSP 1 Score: 434.9 bits (1117), Expect = 2.500e-118
Identity = 210/314 (66.88%), Postives = 265/314 (84.39%), Query Frame = 0
Query:   27 PWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            PWVEKYRP TL DVVGN E ID L+ +A+DGNM ++++AGPPGTGKT+SILCLARELLG   +  AVLELNASD+RGID +R++IKMFAQ+KV LPPGRHK+VILDEADSMT AAQQALRRTMEI+S TTRFALACN S+KIIEPIQSRCAILRF+RL DE LL+RL Q+C++E VG+ +DGL A++FTAEGDMRNA+NNLQ+TFSGFG++N+ANVFKVCDQPHP  ++ ++  C + GD+ GA+++L+ +W  GYS  DIIGT+F+VC++   M+E  KL FI+ IG  HM +A+G++S  QL GL+A+LC+L
Sbjct:    8 PWVEKYRPQTLSDVVGNAETIDCLRAMARDGNMTNLIIAGPPGTGKTTSILCLARELLGPA-MKQAVLELNASDDRGIDTVRNKIKMFAQQKVTLPPGRHKIVILDEADSMTAAAQQALRRTMEIFSSTTRFALACNNSTKIIEPIQSRCAILRFTRLKDEMLLERLIQVCQAEKVGYRDDGLAALLFTAEGDMRNALNNLQATFSGFGFINEANVFKVCDQPHPTAVRSIIGHC-TKGDIDGAEKELIALWKTGYSTQDIIGTVFRVCKSF-MMDEKLKLEFIKAIGSTHMNIADGVSSLLQLHGLIARLCAL 318          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: CBN76937.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 432.2 bits (1110), Expect = 1.600e-117
Identity = 207/313 (66.13%), Postives = 263/313 (84.03%), Query Frame = 0
Query:   26 LPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLC 339
            +PWVEKYRP  LDDVVGN + +DRLKV+A++GNMP++++ GPPGTGKT+S+  LA  +LG+     AVLELNASD RGI+V+R+ IKMF QKKV LPPG+HKV+ILDEADSMT +AQQALRRTMEIYSHTTRFALACN S+KIIEPIQSRCAILRFSRL++EE+L RL+Q+CE+E V +S DGLEA+IFTAEGDMRNA+NNLQ+T SGFG+V+QANVFKVCDQPHP ++ E+L+ C   GD   A  ++  +++ GYS++DIIGT+F+VC+N   +NEG KL  I+E+G  H+RVA+G+NS  QL+G+ A+LC
Sbjct:   10 VPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDA-YANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILDEADSMTASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCEAEQVSYSPDGLEAIIFTAEGDMRNALNNLQATHSGFGHVDQANVFKVCDQPHPGVVLEILKSCV-EGDCAKASRRMKALYDTGYSSNDIIGTVFRVCKNQLEVNEGAKLEMIKEVGFTHVRVADGVNSLLQLMGMCARLC 320          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_007390786.1 (hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa HHB-10118-sp] >EKM61365.1 hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa HHB-10118-sp])

HSP 1 Score: 425.6 bits (1093), Expect = 1.500e-115
Identity = 214/335 (63.88%), Postives = 267/335 (79.70%), Query Frame = 0
Query:   15 MQTEKG---------SLPGLLPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            M T+KG         SLP  LPWVEKYRP TLDDVVGN E I+RLKVVA+DGN PH++L+G PG GKT+SI CLA +LLG+      VLELNASDERGIDV+R+++K FAQKKV LPPGRHK+VILDEADSMT  AQQALRRTMEI+++TTRFALACN S+KIIEPIQSRCAILR+++L D E+L RL +ICE EGV +++DGL A+IFTAEGDMR AINNLQSTFSGFG+V+  NVFKVCDQPHP++++ ++  C   GD++ A EKL ++WN GYSA DI+ T+F+V +    + E TKL +I+EIG  HMR+ EG+++  QL GL+A+LC +
Sbjct:    1 MSTDKGKAPANGTAASLPYELPWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSGLPGIGKTTSIHCLAHQLLGDA-YKEGVLELNASDERGIDVVRNKVKAFAQKKVTLPPGRHKIVILDEADSMTPGAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDAEVLRRLLEICEMEGVKYNDDGLTALIFTAEGDMRQAINNLQSTFSGFGFVSADNVFKVCDQPHPVVVQAMIRSCL-KGDVENAMEKLNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFTHMRILEGVSTLIQLGGLMARLCKM 333          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: OSD03208.1 (P-loop containing nucleoside triphosphate hydrolase protein [Trametes coccinea BRFM310])

HSP 1 Score: 425.6 bits (1093), Expect = 1.500e-115
Identity = 209/336 (62.20%), Postives = 266/336 (79.17%), Query Frame = 0
Query:    5 ASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            +SS A    P   +  +LP  LPWVEKYRP TLDD+VGN + I+RLKV+A+DGN PH++++G PG GKT+SI CLA +LLG+      VLELNASDERGIDV+R++IK FAQKKV LPPGRHK++ILDEADSMT  AQQALRRTMEIY++TTRFALACN S+KIIEPIQSRCAILR+++L D+E+L RL +ICE E V +SN+GLEA+IFTAEGDMR AINNLQST+SGFG+V+  NVFKVCDQPHP+ ++ ++  C  S D+ GA +KL  +W+ GYSA DI+ T+F+V +    + E TKL +I+EIG  HMR+ EG+ +  QL GL+A+LC +
Sbjct:    2 SSSTAKGKAPANGDASTLPYELPWVEKYRPQTLDDIVGNTDTIERLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDA-YKEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICEMENVKYSNEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSADNVFKVCDQPHPITVQAMIRACLKS-DIDGAMDKLNALWDQGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGWTHMRILEGVGTLIQLGGLMARLCRM 335          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_005646717.1 (DNA replication factor C complex subunit 2 [Coccomyxa subellipsoidea C-169] >EIE22173.1 DNA replication factor C complex subunit 2 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 424.5 bits (1090), Expect = 3.300e-115
Identity = 208/337 (61.72%), Postives = 270/337 (80.12%), Query Frame = 0
Query:   14 PMQTEKGSLPGL-----------LPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCS 340
            P   EKG  P             +PWVEK+RP+ + D+VGN +A+DRL+V++++GNMP+++LAGPPGTGKT+SILCLAR LLG +N    VLELNASD+RGIDV+R++IKMFAQKKV LPPGRHKVVILDEADSMT  AQQALRRTMEIYS+TTRFALACNTSSKIIEPIQSRCAI+R+++L+D+E+L+RL  +C SE V + ++GL AVIFTA+GDMR A+NNLQ+T+ GFG +   +VFKVCDQPHPLL+ E+++ C ++ ++ GA + + K+ ++GYS+ DII TLF+V +N   + E  KL FIRE+G  HMR+ +G+NSR QL GLLAKLC+
Sbjct:   20 PSAAEKGKAPATNDTDTSKKDSGIPWVEKFRPLYVKDIVGNTDAVDRLQVISEEGNMPNIILAGPPGTGKTTSILCLARALLG-QNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRYTKLSDKEVLERLLVVCRSESVPYVDEGLGAVIFTADGDMRQALNNLQATYYGFGMITPEHVFKVCDQPHPLLISEIVKNC-TAANIDGAYDGMKKICDMGYSSMDIIQTLFRVVKNDPKLPEFLKLEFIREVGFCHMRIEDGVNSRLQLSGLLAKLCT 354          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_008032357.1 (P-loop containing nucleoside triphosphate hydrolase protein [Trametes versicolor FP-101664 SS1] >EIW64192.1 P-loop containing nucleoside triphosphate hydrolase protein [Trametes versicolor FP-101664 SS1])

HSP 1 Score: 422.5 bits (1085), Expect = 1.300e-114
Identity = 210/337 (62.31%), Postives = 266/337 (78.93%), Query Frame = 0
Query:    5 ASSAACSATPMQTEKGSLPGL-LPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSL 341
            +SS A    P      +LP   LPWVEKYRP  LDDVVGN + I+RLK++A+DGN PH++++G PG GKT+SI CLA +LLG +     VLELNASDERGIDV+R++IK FAQKKV LPPGRHK+VILDEADSMT  AQQALRRTMEIY++TTRFALACN S+KIIEPIQSRCAILR+S+L D+E+L RL +ICE E V +SN+GLEA+IFTAEGDMR AINNLQST+SGFG+V+  NVFKVCDQPHP+ ++ ++  C   GD++GA +KL ++W+ GYSA DI+ T+F+V +    + E TKL +I+EIG  HMR+ EG+ +  QL GL+A+LC +
Sbjct:    2 SSSTAKGKAPANGNAANLPNYELPWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIISGMPGIGKTTSIHCLAHQLLG-DGYKEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILRYSKLRDQEVLKRLLEICEMEKVEYSNEGLEALIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITVQAMIRACL-KGDIEGAMDKLDELWDQGYSAVDIVVTVFRVVKTFDEIPEYTKLEYIKEIGWTHMRILEGVGTLIQLGGLMARLCKM 336          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_002957431.1 (DNA replication factor C complex subunit 2 [Volvox carteri f. nagariensis] >EFJ41486.1 DNA replication factor C complex subunit 2 [Volvox carteri f. nagariensis])

HSP 1 Score: 422.2 bits (1084), Expect = 1.700e-114
Identity = 207/314 (65.92%), Postives = 263/314 (83.76%), Query Frame = 0
Query:   26 LPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCS 340
            LPW+EKYRP  + ++VGN+EA+ RL+V+A++GNMP+++LAGPPGTGKT+SILCLA +LLG      AVLELNASD+RGIDV+R++IKMFAQKKV LPPGRHK+VILDEADSMT  AQQALRRTMEIYS+TTRFALACN SSKIIEPIQSRCAI+R+SR++D ++L RLR +CE EGV ++++G+EA+IFTA+GDMR A+NNLQ+T SGFG+++Q NVFKVCDQPHP L+  ++E C S  DL  A   L  + +LGYS+ DII T+F+V RN + + E  KL ++RE+G  HMR+AEG+NSR QL G+LAKLCS
Sbjct:   19 LPWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLG-PTYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEKEGVTYNDEGMEALIFTADGDMRQALNNLQATHSGFGFISQENVFKVCDQPHPKLVMSIIENC-SKADLDAAYAGLKGLVDLGYSSHDIITTVFRVVRN-ADIPEFLKLEYLREVGFCHMRIAEGVNSRLQLSGMLAKLCS 329          
BLAST of NO22G00050 vs. NCBI_GenBank
Match: XP_009839569.1 (hypothetical protein H257_13662 [Aphanomyces astaci] >ETV70906.1 hypothetical protein H257_13662 [Aphanomyces astaci])

HSP 1 Score: 421.8 bits (1083), Expect = 2.200e-114
Identity = 198/313 (63.26%), Postives = 264/313 (84.35%), Query Frame = 0
Query:   27 PWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCS 340
            PWVEKYRP TL ++VGN E ++RL+V+AK+GNMP+++++GPPG GKT+SILCLAR+LLG+  +  AVLELNASD+RGID +R++IKMFA +KV LPP R K+VILDEADSMT AAQQALRRTME++S TTRFALACN S+KIIEPIQSRCAILR++RL DE +L+RL  +C++E VG+++DG+EA+IFTAEGDMRNA+NN Q+TFSGFGY++ ANVFKVCDQPHP ++KE+++ C   GD+  A++ ++ +W  GYSA DIIGT+F+V ++ + M+E  KL+F++ IG  HM VA+GL +  QL GL+A+LC+
Sbjct:    8 PWVEKYRPSTLSEIVGNSETVNRLQVIAKEGNMPNIIISGPPGIGKTTSILCLARDLLGDALMKTAVLELNASDDRGIDTVRNKIKMFAMQKVTLPPNRQKIVILDEADSMTTAAQQALRRTMEVFSSTTRFALACNNSTKIIEPIQSRCAILRYTRLKDEMILERLVHVCDAEKVGYNHDGMEALIFTAEGDMRNALNNCQATFSGFGYISDANVFKVCDQPHPTVVKEIIDACV-QGDMVTAEKAMVALWKSGYSALDIIGTVFRVAKS-TDMDESLKLDFVKLIGQAHMCVADGLTTLVQLHGLVARLCA 318          
The following BLAST results are available for this feature:
BLAST of NO22G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20422.11.000e-16481.23activator 1 37 kda subunit [Nannochloropsis gadita... [more]
XP_005855000.12.100e-15468.86replication factor C subunit 2/4 [Nannochloropsis ... [more]
GAX99740.12.500e-11866.88replication factor C subunit 2 [Pythium insidiosum... [more]
CBN76937.11.600e-11766.13conserved unknown protein [Ectocarpus siliculosus][more]
XP_007390786.11.500e-11563.88hypothetical protein PHACADRAFT_111883 [Phanerocha... [more]
OSD03208.11.500e-11562.20P-loop containing nucleoside triphosphate hydrolas... [more]
XP_005646717.13.300e-11561.72DNA replication factor C complex subunit 2 [Coccom... [more]
XP_008032357.11.300e-11462.31P-loop containing nucleoside triphosphate hydrolas... [more]
XP_002957431.11.700e-11465.92DNA replication factor C complex subunit 2 [Volvox... [more]
XP_009839569.12.200e-11463.26hypothetical protein H257_13662 [Aphanomyces astac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ngnoR115ngnoR115Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO22G00050.1NO22G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100413g2gene9983Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO22G00050.1NO22G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO22G00050 ID=NO22G00050|Name=NO22G00050|organism=Nannochloropsis oceanica|type=gene|length=2961bp
ATGGCTGCCGCTGCTTCTTCCGCTGCCTGCTCTGCCACGCCCATGCAGAC
GGAAAAAGGGTCGTTGCCAGGTCTGTTGCCGTGGGTGGAAAAGTATCGGC
CCGTGACTCTTGACGATgtgagtttattggggttggcggaggacgagagg
aaagaggaagggacgggggagggaggtttcttcctacaacatgagagcgc
atggccctctccctgttcttgctagttgtgaggcacggcattatttttga
agcgagggcatttagtgtacgatcattgtcggattgcttgaattcatcat
tccgattagaaaggttatgtggcgaggaagaaagggctctagggagagat
gcctgtccgcctctggtgtcctttcgctctgtcgtcgctcttctgtaccg
tcccctcgatcttgtgaagctcctcgtccatcttttcttttattcctgta
cctgctgctgctctgtagctcatctccttcgaccctctttccctcccccc
tcactccctccccccttccctctcctcccaccctccatccagGTGGTGGG
CAACGTCGAGGCCATCGACCGCCTTAAGGTCGTGGCCAAGGACGGAAACA
TGCCCCACATGCTACTGGCCGGTCCCCCGgtgcgtttgtatgccccactc
gtccctccctccctgcctccttccctgcgtcccgccctgaagctctttca
cctcattccttcgccacagtcaatacccctcccctccctcctctcctcct
cttcttccttcttgggatgctgtttctcatcaccttctctatcactccta
aatctgaacatataaatttagGGAACTGGAAAAACCTCTTCCATCCTTTG
CCTTGCCCGTGAGCTGCTTGGAGAGGAAAACATAGgtacctccctccctc
cctccctcccttcctccctccctcactccctcccttctccttcgactcac
cgtccctctgtctactccttcctttccttttcttcctcgctcgcagGCGC
GGCCGTGCTGGAATTGAATGCCTCTGACGAGCGCGGCATTGACGTCATCC
GGTCCCGCATCAAGATGTTCGCGCAAAAGAAGgtaccgccctccctccct
cccgtctaagctcctgcatatctcccgtcaaagctcctgtatatatagaa
agaaacaattcccctcacatccgacacctcctaccccctccctccctccc
tccctccctccctccctccttcagGTGGTGTTGCCCCCCGGTCGTCACAA
GGTGGTTATCTTGGACGAGGCGGATTCCATGACCTGCGCCGCGCAGCAGG
CACTGCGGAGAACGATGGAGgtggggagggagggagggacagaaagagat
agagaagagagggaaatgagtgcggtggagggatggagagggtgggggag
gtagagaggaaagggaagggagaacgatggagggagggaggaggcagggg
ggaggctcctatttcagtgaaagctgctgcctgttgctcatccacccccc
ctacctttcctttttcccttgattccctccctgcttctcccagATCTACT
CGCACACGACGCGCTTTGCCCTGGCCTGCAACACCAGCAGCAAGATCATC
GAGCCTATCCAGTCCCGCTGTGCCATTCTCCGCTTCTCCCGCCTTGCGGA
CGAGgtacattcgccctcccttcctcccttcctcccttcctccctccctc
cctccctccctccccttctccctccttccccttctccctccctcttcagt
acaagagcctttcattgattgataaatatccatccgtacatagctcatct
ccctcccctccctccctccctccctccctccgtcactccctcagGAGCTG
TTGGACCGCCTGCGTCAGATTTGCGAGTCCGAGGGTGTAGGCTTCTCCAA
CGACGGCCTGGAAGCAGgtgagggaaggaggaggggggtagggggggaag
gagggttgctcttgtcttgggaaacccacttccttcatcctccctcatat
accgtcccctcccgccctccctccctcccgtctccatcctctcagTCATC
TTCACGGCCGAGGGGGACATGCGCAATGCCATCAACAACTTGCAGAGCAC
CTTCTCGGGCTTCGGATACGTCAACCAGgtggggagggagggagggaggg
agggaatgcagagctatggaatagctgactgacccgtgtctccttccttc
ccccactcctttcctccctccttgccgtcctccttccttccctccctccc
tccccccctcagGCCAATGTGTTTAAGGTCTGCGACCAGCCGCATCCTCT
CCTGATGAAGGAGGTATTGGAGCTCTGCGCCAGCTCGGGGGATCTAAAGG
GGGCTCAGGAGAAgtaagagagggagggagggagggagggaaggagggag
ggagggagggaggaaagggtttaattatgggaaaacgtgatggctgaatt
gaggctcatcttggccacttgccctccctccctccctccctcctccctcc
tttgtgcagGCTTTTGAAGGTATGGAATCTGGGCTACAGCGCCTCGGACA
TCATCGGCACCCTCTTCAAGgtaaggagggagggacggagggacggaggg
agggaaggagggacggagggacggaaggccctgacgctcgcaagctgctt
ctttctcctgggatgcatccatcggtacagGTTTGCCGCAACCACAGCAC
TATGAACGAGGGCACCAAGCTCAACTTCATACGGgtaggtccttccctcc
ctccctctctcctaccctccctctctcaccttcgcggccctccctccctc
cccctccttcgtagGAGATCGGCATGGTGCACATGCGTGTGGCCGAGGGC
CTTAACTCTCGCACCCAGCTCTTGGGGCTGCTGGCCAAGCTATGCTCGCT
TTACCACAAGCAGCAGCAGCAGCAGCAGCAGCCGGAAGGGGGGGGGCAGA
GTAGTAATTAA
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protein sequence of NO22G00050.1

>NO22G00050.1-protein ID=NO22G00050.1-protein|Name=NO22G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MAAAASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRL
KVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASD
ERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTME
IYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESE
GVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPH
PLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHST
MNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSLYHKQQQQQQQ
PEGGGQSSN*
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Synonyms
Publications