NO22G00050.1, NO22G00050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO22G00050.1
Unique NameNO22G00050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1080
Alignment locationchr22:19256..22216 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr22genomechr22:19256..22216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO22G00050.1 vs.
Match: EWM20422.1 (activator 1 37 kda subunit [Nannochloropsis gaditana])

HSP 1 Score: 600.9 bits (1548), Expect = 2.600e-168
Identity = 313/391 (80.05%), Postives = 337/391 (86.19%), Query Frame = 0 
Query:    1 MAAAASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRLKVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEEN---------------------------------IGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESEGVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPHPLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHSTMNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSLYHKQQQQQQQPEGGGQSS 359
            MA AA++++ +   +Q EK + PGLLPWVEKYRPVTL+DVVGN EAIDRLKVVA+DGNMPHMLLAGPPGTGKTSSI+CL+RELLGEE+                                  GAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMT AAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEE+LDRLRQICE+E VGFS+DGLEAVIFTAEGDMRNAINNLQST+SGFGYVNQANVFKVCDQPHPLLMKEVL+LCA SGDLK AQEKLL+VWNLGYSASDI+GTLFKVCRNH TMNEGTKLNFIREIGMVHMR+AEGLNSRTQ+LGLLAKLC+L HKQQQQ +   G GQS+
Sbjct:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHE--NGKGQSN 389
The following BLAST results are available for this feature:
BLAST of NO22G00050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20422.12.600e-16880.05activator 1 37 kda subunit [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO22G00050NO22G00050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO22G00050.1NO22G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO22G00050.1.cds1NO22G00050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds2NO22G00050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds3NO22G00050.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds4NO22G00050.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds5NO22G00050.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds6NO22G00050.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds7NO22G00050.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds8NO22G00050.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds9NO22G00050.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds10NO22G00050.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds11NO22G00050.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO22G00050.1.cds12NO22G00050.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO22G00050.1 ID=NO22G00050.1|Name=NO22G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1080bp
ATGGCTGCCGCTGCTTCTTCCGCTGCCTGCTCTGCCACGCCCATGCAGAC
GGAAAAAGGGTCGTTGCCAGGTCTGTTGCCGTGGGTGGAAAAGTATCGGC
CCGTGACTCTTGACGATGTGGTGGGCAACGTCGAGGCCATCGACCGCCTT
AAGGTCGTGGCCAAGGACGGAAACATGCCCCACATGCTACTGGCCGGTCC
CCCGGGAACTGGAAAAACCTCTTCCATCCTTTGCCTTGCCCGTGAGCTGC
TTGGAGAGGAAAACATAGGCGCGGCCGTGCTGGAATTGAATGCCTCTGAC
GAGCGCGGCATTGACGTCATCCGGTCCCGCATCAAGATGTTCGCGCAAAA
GAAGGTGGTGTTGCCCCCCGGTCGTCACAAGGTGGTTATCTTGGACGAGG
CGGATTCCATGACCTGCGCCGCGCAGCAGGCACTGCGGAGAACGATGGAG
ATCTACTCGCACACGACGCGCTTTGCCCTGGCCTGCAACACCAGCAGCAA
GATCATCGAGCCTATCCAGTCCCGCTGTGCCATTCTCCGCTTCTCCCGCC
TTGCGGACGAGGAGCTGTTGGACCGCCTGCGTCAGATTTGCGAGTCCGAG
GGTGTAGGCTTCTCCAACGACGGCCTGGAAGCAGTCATCTTCACGGCCGA
GGGGGACATGCGCAATGCCATCAACAACTTGCAGAGCACCTTCTCGGGCT
TCGGATACGTCAACCAGGCCAATGTGTTTAAGGTCTGCGACCAGCCGCAT
CCTCTCCTGATGAAGGAGGTATTGGAGCTCTGCGCCAGCTCGGGGGATCT
AAAGGGGGCTCAGGAGAAGCTTTTGAAGGTATGGAATCTGGGCTACAGCG
CCTCGGACATCATCGGCACCCTCTTCAAGGTTTGCCGCAACCACAGCACT
ATGAACGAGGGCACCAAGCTCAACTTCATACGGGAGATCGGCATGGTGCA
CATGCGTGTGGCCGAGGGCCTTAACTCTCGCACCCAGCTCTTGGGGCTGC
TGGCCAAGCTATGCTCGCTTTACCACAAGCAGCAGCAGCAGCAGCAGCAG
CCGGAAGGGGGGGGGCAGAGTAGTAATTAA
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protein sequence of NO22G00050.1

>NO22G00050.1-protein ID=NO22G00050.1-protein|Name=NO22G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MAAAASSAACSATPMQTEKGSLPGLLPWVEKYRPVTLDDVVGNVEAIDRL
KVVAKDGNMPHMLLAGPPGTGKTSSILCLARELLGEENIGAAVLELNASD
ERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTCAAQQALRRTME
IYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEELLDRLRQICESE
GVGFSNDGLEAVIFTAEGDMRNAINNLQSTFSGFGYVNQANVFKVCDQPH
PLLMKEVLELCASSGDLKGAQEKLLKVWNLGYSASDIIGTLFKVCRNHST
MNEGTKLNFIREIGMVHMRVAEGLNSRTQLLGLLAKLCSLYHKQQQQQQQ
PEGGGQSSN*
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mRNA from alignment at chr22:19256..22216+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO22G00050.1 ID=NO22G00050.1|Name=NO22G00050.1|organism=Nannochloropsis oceanica|type=mRNA|length=2961bp|location=Sequence derived from alignment at chr22:19256..22216+ (Nannochloropsis oceanica)
ATGGCTGCCGCTGCTTCTTCCGCTGCCTGCTCTGCCACGCCCATGCAGAC
GGAAAAAGGGTCGTTGCCAGGTCTGTTGCCGTGGGTGGAAAAGTATCGGC
CCGTGACTCTTGACGATGTGAGTTTATTGGGGTTGGCGGAGGACGAGAGG
AAAGAGGAAGGGACGGGGGAGGGAGGTTTCTTCCTACAACATGAGAGCGC
ATGGCCCTCTCCCTGTTCTTGCTAGTTGTGAGGCACGGCATTATTTTTGA
AGCGAGGGCATTTAGTGTACGATCATTGTCGGATTGCTTGAATTCATCAT
TCCGATTAGAAAGGTTATGTGGCGAGGAAGAAAGGGCTCTAGGGAGAGAT
GCCTGTCCGCCTCTGGTGTCCTTTCGCTCTGTCGTCGCTCTTCTGTACCG
TCCCCTCGATCTTGTGAAGCTCCTCGTCCATCTTTTCTTTTATTCCTGTA
CCTGCTGCTGCTCTGTAGCTCATCTCCTTCGACCCTCTTTCCCTCCCCCC
TCACTCCCTCCCCCCTTCCCTCTCCTCCCACCCTCCATCCAGGTGGTGGG
CAACGTCGAGGCCATCGACCGCCTTAAGGTCGTGGCCAAGGACGGAAACA
TGCCCCACATGCTACTGGCCGGTCCCCCGGTGCGTTTGTATGCCCCACTC
GTCCCTCCCTCCCTGCCTCCTTCCCTGCGTCCCGCCCTGAAGCTCTTTCA
CCTCATTCCTTCGCCACAGTCAATACCCCTCCCCTCCCTCCTCTCCTCCT
CTTCTTCCTTCTTGGGATGCTGTTTCTCATCACCTTCTCTATCACTCCTA
AATCTGAACATATAAATTTAGGGAACTGGAAAAACCTCTTCCATCCTTTG
CCTTGCCCGTGAGCTGCTTGGAGAGGAAAACATAGGTACCTCCCTCCCTC
CCTCCCTCCCTTCCTCCCTCCCTCACTCCCTCCCTTCTCCTTCGACTCAC
CGTCCCTCTGTCTACTCCTTCCTTTCCTTTTCTTCCTCGCTCGCAGGCGC
GGCCGTGCTGGAATTGAATGCCTCTGACGAGCGCGGCATTGACGTCATCC
GGTCCCGCATCAAGATGTTCGCGCAAAAGAAGGTACCGCCCTCCCTCCCT
CCCGTCTAAGCTCCTGCATATCTCCCGTCAAAGCTCCTGTATATATAGAA
AGAAACAATTCCCCTCACATCCGACACCTCCTACCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCAGGTGGTGTTGCCCCCCGGTCGTCACAA
GGTGGTTATCTTGGACGAGGCGGATTCCATGACCTGCGCCGCGCAGCAGG
CACTGCGGAGAACGATGGAGGTGGGGAGGGAGGGAGGGACAGAAAGAGAT
AGAGAAGAGAGGGAAATGAGTGCGGTGGAGGGATGGAGAGGGTGGGGGAG
GTAGAGAGGAAAGGGAAGGGAGAACGATGGAGGGAGGGAGGAGGCAGGGG
GGAGGCTCCTATTTCAGTGAAAGCTGCTGCCTGTTGCTCATCCACCCCCC
CTACCTTTCCTTTTTCCCTTGATTCCCTCCCTGCTTCTCCCAGATCTACT
CGCACACGACGCGCTTTGCCCTGGCCTGCAACACCAGCAGCAAGATCATC
GAGCCTATCCAGTCCCGCTGTGCCATTCTCCGCTTCTCCCGCCTTGCGGA
CGAGGTACATTCGCCCTCCCTTCCTCCCTTCCTCCCTTCCTCCCTCCCTC
CCTCCCTCCCTCCCCTTCTCCCTCCTTCCCCTTCTCCCTCCCTCTTCAGT
ACAAGAGCCTTTCATTGATTGATAAATATCCATCCGTACATAGCTCATCT
CCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCGTCACTCCCTCAGGAGCTG
TTGGACCGCCTGCGTCAGATTTGCGAGTCCGAGGGTGTAGGCTTCTCCAA
CGACGGCCTGGAAGCAGGTGAGGGAAGGAGGAGGGGGGTAGGGGGGGAAG
GAGGGTTGCTCTTGTCTTGGGAAACCCACTTCCTTCATCCTCCCTCATAT
ACCGTCCCCTCCCGCCCTCCCTCCCTCCCGTCTCCATCCTCTCAGTCATC
TTCACGGCCGAGGGGGACATGCGCAATGCCATCAACAACTTGCAGAGCAC
CTTCTCGGGCTTCGGATACGTCAACCAGGTGGGGAGGGAGGGAGGGAGGG
AGGGAATGCAGAGCTATGGAATAGCTGACTGACCCGTGTCTCCTTCCTTC
CCCCACTCCTTTCCTCCCTCCTTGCCGTCCTCCTTCCTTCCCTCCCTCCC
TCCCCCCCTCAGGCCAATGTGTTTAAGGTCTGCGACCAGCCGCATCCTCT
CCTGATGAAGGAGGTATTGGAGCTCTGCGCCAGCTCGGGGGATCTAAAGG
GGGCTCAGGAGAAGTAAGAGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAG
GGAGGGAGGGAGGAAAGGGTTTAATTATGGGAAAACGTGATGGCTGAATT
GAGGCTCATCTTGGCCACTTGCCCTCCCTCCCTCCCTCCCTCCTCCCTCC
TTTGTGCAGGCTTTTGAAGGTATGGAATCTGGGCTACAGCGCCTCGGACA
TCATCGGCACCCTCTTCAAGGTAAGGAGGGAGGGACGGAGGGACGGAGGG
AGGGAAGGAGGGACGGAGGGACGGAAGGCCCTGACGCTCGCAAGCTGCTT
CTTTCTCCTGGGATGCATCCATCGGTACAGGTTTGCCGCAACCACAGCAC
TATGAACGAGGGCACCAAGCTCAACTTCATACGGGTAGGTCCTTCCCTCC
CTCCCTCTCTCCTACCCTCCCTCTCTCACCTTCGCGGCCCTCCCTCCCTC
CCCCTCCTTCGTAGGAGATCGGCATGGTGCACATGCGTGTGGCCGAGGGC
CTTAACTCTCGCACCCAGCTCTTGGGGCTGCTGGCCAAGCTATGCTCGCT
TTACCACAAGCAGCAGCAGCAGCAGCAGCAGCCGGAAGGGGGGGGGCAGA
GTAGTAATTAA
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Coding sequence (CDS) from alignment at chr22:19256..22216+

>NO22G00050.1 ID=NO22G00050.1|Name=NO22G00050.1|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at chr22:19256..22216+ (Nannochloropsis oceanica)
ATGGCTGCCGCTGCTTCTTCCGCTGCCTGCTCTGCCACGCCCATGCAGAC
GGAAAAAGGGTCGTTGCCAGGTCTGTTGCCGTGGGTGGAAAAGTATCGGC
CCGTGACTCTTGACGATGTGGTGGGCAACGTCGAGGCCATCGACCGCCTT
AAGGTCGTGGCCAAGGACGGAAACATGCCCCACATGCTACTGGCCGGTCC
CCCGGGAACTGGAAAAACCTCTTCCATCCTTTGCCTTGCCCGTGAGCTGC
TTGGAGAGGAAAACATAGGCGCGGCCGTGCTGGAATTGAATGCCTCTGAC
GAGCGCGGCATTGACGTCATCCGGTCCCGCATCAAGATGTTCGCGCAAAA
GAAGGTGGTGTTGCCCCCCGGTCGTCACAAGGTGGTTATCTTGGACGAGG
CGGATTCCATGACCTGCGCCGCGCAGCAGGCACTGCGGAGAACGATGGAG
ATCTACTCGCACACGACGCGCTTTGCCCTGGCCTGCAACACCAGCAGCAA
GATCATCGAGCCTATCCAGTCCCGCTGTGCCATTCTCCGCTTCTCCCGCC
TTGCGGACGAGGAGCTGTTGGACCGCCTGCGTCAGATTTGCGAGTCCGAG
GGTGTAGGCTTCTCCAACGACGGCCTGGAAGCAGTCATCTTCACGGCCGA
GGGGGACATGCGCAATGCCATCAACAACTTGCAGAGCACCTTCTCGGGCT
TCGGATACGTCAACCAGGCCAATGTGTTTAAGGTCTGCGACCAGCCGCAT
CCTCTCCTGATGAAGGAGGTATTGGAGCTCTGCGCCAGCTCGGGGGATCT
AAAGGGGGCTCAGGAGAAGCTTTTGAAGGTATGGAATCTGGGCTACAGCG
CCTCGGACATCATCGGCACCCTCTTCAAGGTTTGCCGCAACCACAGCACT
ATGAACGAGGGCACCAAGCTCAACTTCATACGGGAGATCGGCATGGTGCA
CATGCGTGTGGCCGAGGGCCTTAACTCTCGCACCCAGCTCTTGGGGCTGC
TGGCCAAGCTATGCTCGCTTTACCACAAGCAGCAGCAGCAGCAGCAGCAG
CCGGAAGGGGGGGGGCAGAGTAGTAATTAA
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Synonyms
Publications