NO21G02550, NO21G02550 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02550 vs. NCBI_GenBank
Match: EWM29469.1 (mmpl domain protein [Nannochloropsis gaditana]) HSP 1 Score: 162.5 bits (410), Expect = 6.900e-37 Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 0
Query: 1 MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD----HAVPCVR 98
ME HTDQGALVRGMVNTGHIITAAG+IMAVAFSGLLFSSELILNQTAFLLV+SVLLDTF+VRTFLVPILMTWSGA TWWPR LP PTKD + CVR
Sbjct: 318 MEAHTDQGALVRGMVNTGHIITAAGIIMAVAFSGLLFSSELILNQTAFLLVVSVLLDTFIVRTFLVPILMTWSGAYTWWPRQRLPTPTKDLCPEEYIVCVR 418
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_013761942.1 (MmpL efflux pump [Thecamonas trahens ATCC 50062] >KNC53625.1 MmpL efflux pump [Thecamonas trahens ATCC 50062]) HSP 1 Score: 87.8 bits (216), Expect = 2.200e-14 Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 0
Query: 3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
G + A ++G+ TG IITAAG+IMA+AFSGLL S+ ++NQ AF LV SVL DTFVVRTFLVP +M++ G WWP
Sbjct: 830 GLATRDAAIKGLSRTGSIITAAGIIMAIAFSGLLLSNVAVINQLAFYLVFSVLFDTFVVRTFLVPSIMSFFGDWNWWP 907
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_004997015.1 (hypothetical protein PTSG_11885 [Salpingoeca rosetta] >EGD81811.1 hypothetical protein PTSG_11885 [Salpingoeca rosetta]) HSP 1 Score: 85.1 bits (209), Expect = 1.400e-13 Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 0
Query: 2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAP 88
+G +D +++ G+ TG IITAAG+IMA+AF GLLF++E +LNQ +F LV +VL+DTF++R+ +VP LM G WWP +P P
Sbjct: 746 DGFSDYDSVLLGLARTGGIITAAGIIMAIAFVGLLFTAEAVLNQLSFYLVFAVLIDTFIIRSAVVPALMRLIGRFNWWP-SRMPTP 830
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_004992264.1 (hypothetical protein PTSG_06862 [Salpingoeca rosetta] >EGD75211.1 hypothetical protein PTSG_06862 [Salpingoeca rosetta]) HSP 1 Score: 82.4 bits (202), Expect = 9.100e-13 Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0
Query: 3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
G D+ +++ G+ TG +ITAAGVIMA+AF GLLFS E ++ Q AF +V++VL+DTFVVR LVP +M+ G WWP
Sbjct: 761 GFDDEESVLLGLARTGRVITAAGVIMAIAFLGLLFSHEALVQQLAFFIVIAVLIDTFVVRACLVPAMMSVLGRFNWWP 838
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_005777312.1 (hypothetical protein EMIHUDRAFT_443765 [Emiliania huxleyi CCMP1516] >EOD24883.1 hypothetical protein EMIHUDRAFT_443765 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12 Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query: 2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVP 95
+G T Q A+ G+ +TG II++AG+IMA+AFSGLLFS+ L+ AF LV +VL DTFV+R LVP M G WWP+ APT+ A P
Sbjct: 808 KGATTQQAIRHGVTSTGSIISSAGLIMAIAFSGLLFSANPTLDMVAFYLVFAVLADTFVMRPLLVPAAMALLGEANWWPQ----APTQRAAKP 896
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_005791057.1 (hypothetical protein EMIHUDRAFT_440088 [Emiliania huxleyi CCMP1516] >EOD38628.1 hypothetical protein EMIHUDRAFT_440088 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12 Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query: 2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVP 95
+G T Q A+ G+ +TG II++AG+IMA+AFSGLLFS+ L+ AF LV +VL DTFV+R LVP M G WWP+ APT+ A P
Sbjct: 808 KGATTQQAIRHGVTSTGSIISSAGLIMAIAFSGLLFSANPTLDMVAFYLVFAVLADTFVMRPLLVPAAMALLGEANWWPQ----APTQRAAKP 896
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_001748330.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ86785.1 predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 80.1 bits (196), Expect = 4.500e-12 Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0
Query: 3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
G D+ +++ G+ TG +ITAAGVIMA+AF GLLF+ E +L Q +F +V++VL+DTFVVR LVP LM G WWP P D
Sbjct: 951 GFGDRESVLLGLARTGRVITAAGVIMAIAFVGLLFAHEALLVQISFYIVIAVLIDTFVVRACLVPSLMVVLGRVNWWPATMPPVSRGD 1038
BLAST of NO21G02550 vs. NCBI_GenBank
Match: OLS29058.1 (Membrane protein YdfJ [Candidatus Heimdallarchaeota archaeon LC_2]) HSP 1 Score: 77.8 bits (190), Expect = 2.200e-11 Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0
Query: 3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
G + A+ G+ T IIT AG+IM +AF G++FSS IL Q F+L S+L+DTFVVRT LVP +M+++ WWP NLP K+
Sbjct: 695 GMENDEAIAEGLDKTARIITGAGIIMTIAFGGMMFSSSYILVQFGFVLSFSILMDTFVVRTLLVPAIMSYAEKMNWWP--NLPPQYKN 780
BLAST of NO21G02550 vs. NCBI_GenBank
Match: OLP91845.1 (putative membrane protein mmpL11 [Symbiodinium microadriaticum]) HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11 Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 0
Query: 1 MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
++ ++D+ ++ RG++ TG +I+ AG+IM++AFSGL+ S ++ Q L++ SVLLDTFVVRT LVP LM + WWPR +P+ D
Sbjct: 779 LQRYSDRASIFRGVLKTGDVISGAGLIMSLAFSGLVVSDKIFFQQFGVLIITSVLLDTFVVRTVLVPALMLTAQEWNWWPR-TMPSAIHD 867
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_002764888.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EEQ97605.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983]) HSP 1 Score: 77.0 bits (188), Expect = 3.800e-11 Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0
Query: 3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
G+ D+ ++ G+ TG +I+ AG+IMAVAF GL+ +S +LNQ FLLV++VLLDTFVVR F+ P LM G WWP
Sbjct: 776 GYGDKASIEIGVWKTGSVISMAGIIMAVAFLGLVLTSSPMLNQAGFLLVVAVLLDTFVVRPFMTPALMAILGRWNWWP 853 The following BLAST results are available for this feature:
BLAST of NO21G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02550 ID=NO21G02550|Name=NO21G02550|organism=Nannochloropsis oceanica|type=gene|length=919bpback to top protein sequence of NO21G02550.1 >NO21G02550.1-protein ID=NO21G02550.1-protein|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bpback to top Synonyms
Publications
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