NO21G02550, NO21G02550 (gene) Nannochloropsis oceanica

Overview
NameNO21G02550
Unique NameNO21G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length919
Alignment locationchr21:777502..778420 -

Link to JBrowse

Properties
Property NameValue
DescriptionMmpl domain protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:777502..778420 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR004869MMPL_dom
Homology
BLAST of NO21G02550 vs. NCBI_GenBank
Match: EWM29469.1 (mmpl domain protein [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 6.900e-37
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 0
Query:    1 MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD----HAVPCVR 98
            ME HTDQGALVRGMVNTGHIITAAG+IMAVAFSGLLFSSELILNQTAFLLV+SVLLDTF+VRTFLVPILMTWSGA TWWPR  LP PTKD      + CVR
Sbjct:  318 MEAHTDQGALVRGMVNTGHIITAAGIIMAVAFSGLLFSSELILNQTAFLLVVSVLLDTFIVRTFLVPILMTWSGAYTWWPRQRLPTPTKDLCPEEYIVCVR 418          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_013761942.1 (MmpL efflux pump [Thecamonas trahens ATCC 50062] >KNC53625.1 MmpL efflux pump [Thecamonas trahens ATCC 50062])

HSP 1 Score: 87.8 bits (216), Expect = 2.200e-14
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 0
Query:    3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
            G   + A ++G+  TG IITAAG+IMA+AFSGLL S+  ++NQ AF LV SVL DTFVVRTFLVP +M++ G   WWP
Sbjct:  830 GLATRDAAIKGLSRTGSIITAAGIIMAIAFSGLLLSNVAVINQLAFYLVFSVLFDTFVVRTFLVPSIMSFFGDWNWWP 907          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_004997015.1 (hypothetical protein PTSG_11885 [Salpingoeca rosetta] >EGD81811.1 hypothetical protein PTSG_11885 [Salpingoeca rosetta])

HSP 1 Score: 85.1 bits (209), Expect = 1.400e-13
Identity = 43/86 (50.00%), Postives = 62/86 (72.09%), Query Frame = 0
Query:    2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAP 88
            +G +D  +++ G+  TG IITAAG+IMA+AF GLLF++E +LNQ +F LV +VL+DTF++R+ +VP LM   G   WWP   +P P
Sbjct:  746 DGFSDYDSVLLGLARTGGIITAAGIIMAIAFVGLLFTAEAVLNQLSFYLVFAVLIDTFIIRSAVVPALMRLIGRFNWWP-SRMPTP 830          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_004992264.1 (hypothetical protein PTSG_06862 [Salpingoeca rosetta] >EGD75211.1 hypothetical protein PTSG_06862 [Salpingoeca rosetta])

HSP 1 Score: 82.4 bits (202), Expect = 9.100e-13
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 0
Query:    3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
            G  D+ +++ G+  TG +ITAAGVIMA+AF GLLFS E ++ Q AF +V++VL+DTFVVR  LVP +M+  G   WWP
Sbjct:  761 GFDDEESVLLGLARTGRVITAAGVIMAIAFLGLLFSHEALVQQLAFFIVIAVLIDTFVVRACLVPAMMSVLGRFNWWP 838          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_005777312.1 (hypothetical protein EMIHUDRAFT_443765 [Emiliania huxleyi CCMP1516] >EOD24883.1 hypothetical protein EMIHUDRAFT_443765 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVP 95
            +G T Q A+  G+ +TG II++AG+IMA+AFSGLLFS+   L+  AF LV +VL DTFV+R  LVP  M   G   WWP+    APT+  A P
Sbjct:  808 KGATTQQAIRHGVTSTGSIISSAGLIMAIAFSGLLFSANPTLDMVAFYLVFAVLADTFVMRPLLVPAAMALLGEANWWPQ----APTQRAAKP 896          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_005791057.1 (hypothetical protein EMIHUDRAFT_440088 [Emiliania huxleyi CCMP1516] >EOD38628.1 hypothetical protein EMIHUDRAFT_440088 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 80.5 bits (197), Expect = 3.400e-12
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    2 EGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVP 95
            +G T Q A+  G+ +TG II++AG+IMA+AFSGLLFS+   L+  AF LV +VL DTFV+R  LVP  M   G   WWP+    APT+  A P
Sbjct:  808 KGATTQQAIRHGVTSTGSIISSAGLIMAIAFSGLLFSANPTLDMVAFYLVFAVLADTFVMRPLLVPAAMALLGEANWWPQ----APTQRAAKP 896          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_001748330.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ86785.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 80.1 bits (196), Expect = 4.500e-12
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
            G  D+ +++ G+  TG +ITAAGVIMA+AF GLLF+ E +L Q +F +V++VL+DTFVVR  LVP LM   G   WWP    P    D
Sbjct:  951 GFGDRESVLLGLARTGRVITAAGVIMAIAFVGLLFAHEALLVQISFYIVIAVLIDTFVVRACLVPSLMVVLGRVNWWPATMPPVSRGD 1038          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: OLS29058.1 (Membrane protein YdfJ [Candidatus Heimdallarchaeota archaeon LC_2])

HSP 1 Score: 77.8 bits (190), Expect = 2.200e-11
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0
Query:    3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
            G  +  A+  G+  T  IIT AG+IM +AF G++FSS  IL Q  F+L  S+L+DTFVVRT LVP +M+++    WWP  NLP   K+
Sbjct:  695 GMENDEAIAEGLDKTARIITGAGIIMTIAFGGMMFSSSYILVQFGFVLSFSILMDTFVVRTLLVPAIMSYAEKMNWWP--NLPPQYKN 780          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: OLP91845.1 (putative membrane protein mmpL11 [Symbiodinium microadriaticum])

HSP 1 Score: 77.4 bits (189), Expect = 2.900e-11
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 0
Query:    1 MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD 91
            ++ ++D+ ++ RG++ TG +I+ AG+IM++AFSGL+ S ++   Q   L++ SVLLDTFVVRT LVP LM  +    WWPR  +P+   D
Sbjct:  779 LQRYSDRASIFRGVLKTGDVISGAGLIMSLAFSGLVVSDKIFFQQFGVLIITSVLLDTFVVRTVLVPALMLTAQEWNWWPR-TMPSAIHD 867          
BLAST of NO21G02550 vs. NCBI_GenBank
Match: XP_002764888.1 (conserved hypothetical protein [Perkinsus marinus ATCC 50983] >EEQ97605.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983])

HSP 1 Score: 77.0 bits (188), Expect = 3.800e-11
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0
Query:    3 GHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWP 81
            G+ D+ ++  G+  TG +I+ AG+IMAVAF GL+ +S  +LNQ  FLLV++VLLDTFVVR F+ P LM   G   WWP
Sbjct:  776 GYGDKASIEIGVWKTGSVISMAGIIMAVAFLGLVLTSSPMLNQAGFLLVVAVLLDTFVVRPFMTPALMAILGRWNWWP 853          
The following BLAST results are available for this feature:
BLAST of NO21G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29469.16.900e-3784.16mmpl domain protein [Nannochloropsis gaditana][more]
XP_013761942.12.200e-1458.97MmpL efflux pump [Thecamonas trahens ATCC 50062] >... [more]
XP_004997015.11.400e-1350.00hypothetical protein PTSG_11885 [Salpingoeca roset... [more]
XP_004992264.19.100e-1353.85hypothetical protein PTSG_06862 [Salpingoeca roset... [more]
XP_005777312.13.400e-1250.54hypothetical protein EMIHUDRAFT_443765 [Emiliania ... [more]
XP_005791057.13.400e-1250.54hypothetical protein EMIHUDRAFT_440088 [Emiliania ... [more]
XP_001748330.14.500e-1250.00hypothetical protein [Monosiga brevicollis MX1] >E... [more]
OLS29058.12.200e-1147.73Membrane protein YdfJ [Candidatus Heimdallarchaeot... [more]
OLP91845.12.900e-1144.44putative membrane protein mmpL11 [Symbiodinium mic... [more]
XP_002764888.13.800e-1152.56conserved hypothetical protein [Perkinsus marinus ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007729NSK007729Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02550.1NO21G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100449g1gene1164Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02550.1NO21G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02550 ID=NO21G02550|Name=NO21G02550|organism=Nannochloropsis oceanica|type=gene|length=919bp
ATGGAGGGACACACCGATCAAGgcacgtactgagcacccactcccttcct
ccctccctccctccctccctccctttcgttcttgcttgaggcaactgggt
gctggctggcacagagaatggaaggacagactaatacttatagaaagagg
gagggagggagggagggaagtgggagggaaggagggagagagggctggtg
tcagactttttgccaatgtagagtttgatatgcatacctgtatccacacg
tctgtccctccctgcctttccctgtcctccctctctcccctcctccctcc
ctccctcccttcttcgcagGTGCCTTGGTTCGAGGCATGGTCAACACGGG
ACATATCATCACGGCCGCCGgtgagggagggagggagggagggagagagg
aattgacaggggggagagagcgagggatgaggatggctcctgttcttgtt
gtcaccctgaagtagagggggtggaagaagggagggatggagggagagga
ggacggttcatactcactccacttactcatgcaattcccagGTGTGATTA
TGGCTGTGGCTTTTTCAGGATTGCTCTTCTCCTCGGAGgtaggtttaaaa
tgggaaagaggacgggagggaaggagggagagagggagggacgataagac
aatgctcatctttccagatcatcacatgtctcatctgttccctgcctccc
tcatccccatccacctccctttagCTCATCCTCAATCAAACCGCCTTCCT
CCTTGTTCTCTCCGTCCTGCTCGACACCTTCGTCGTGCGTACATTCCTCG
TTCCCATCCTAATGACATGGAGTGGTGCTAAGACATGGTGGCCAAGAGGA
AACCTTCCTGCCCCTACGAAGGACCATGCCGTCCCTTGCGTTAGAAGTGG
AAACGAGAATCAAAGCTAG
back to top

protein sequence of NO21G02550.1

>NO21G02550.1-protein ID=NO21G02550.1-protein|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLL
VLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVPCVRSGN
ENQS*
back to top
Synonyms
Publications