NO21G02550.1, NO21G02550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02550.1
Unique NameNO21G02550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length315
Alignment locationchr21:777502..778420 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:777502..778420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02550.1 vs.
Match: EWM29469.1 (mmpl domain protein [Nannochloropsis gaditana])

HSP 1 Score: 162.5 bits (410), Expect = 6.900e-37
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 0 
Query:    1 MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLLVLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKD----HAVPCVR 98
            ME HTDQGALVRGMVNTGHIITAAG+IMAVAFSGLLFSSELILNQTAFLLV+SVLLDTF+VRTFLVPILMTWSGA TWWPR  LP PTKD      + CVR
Sbjct:  318 MEAHTDQGALVRGMVNTGHIITAAGIIMAVAFSGLLFSSELILNQTAFLLVVSVLLDTFIVRTFLVPILMTWSGAYTWWPRQRLPTPTKDLCPEEYIVCVR 418
The following BLAST results are available for this feature:
BLAST of NO21G02550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
50100150200250300Expect = 6.90e-37 / Id = 84.16SequenceEWM29469.1
Match NameE-valueIdentityDescription
EWM29469.16.900e-3784.16mmpl domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02550NO21G02550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02550.1NO21G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02550.1.cds1NO21G02550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02550.1.cds2NO21G02550.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02550.1.cds3NO21G02550.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02550.1.cds4NO21G02550.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02550.1 ID=NO21G02550.1|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=315bp
ATGGAGGGACACACCGATCAAGGTGCCTTGGTTCGAGGCATGGTCAACAC
GGGACATATCATCACGGCCGCCGGTGTGATTATGGCTGTGGCTTTTTCAG
GATTGCTCTTCTCCTCGGAGCTCATCCTCAATCAAACCGCCTTCCTCCTT
GTTCTCTCCGTCCTGCTCGACACCTTCGTCGTGCGTACATTCCTCGTTCC
CATCCTAATGACATGGAGTGGTGCTAAGACATGGTGGCCAAGAGGAAACC
TTCCTGCCCCTACGAAGGACCATGCCGTCCCTTGCGTTAGAAGTGGAAAC
GAGAATCAAAGCTAG
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protein sequence of NO21G02550.1

>NO21G02550.1-protein ID=NO21G02550.1-protein|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MEGHTDQGALVRGMVNTGHIITAAGVIMAVAFSGLLFSSELILNQTAFLL
VLSVLLDTFVVRTFLVPILMTWSGAKTWWPRGNLPAPTKDHAVPCVRSGN
ENQS*
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mRNA from alignment at chr21:777502..778420-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02550.1 ID=NO21G02550.1|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=mRNA|length=919bp|location=Sequence derived from alignment at chr21:777502..778420- (Nannochloropsis oceanica)
ATGGAGGGACACACCGATCAAGGCACGTACTGAGCACCCACTCCCTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTTTCGTTCTTGCTTGAGGCAACTGGGT
GCTGGCTGGCACAGAGAATGGAAGGACAGACTAATACTTATAGAAAGAGG
GAGGGAGGGAGGGAGGGAAGTGGGAGGGAAGGAGGGAGAGAGGGCTGGTG
TCAGACTTTTTGCCAATGTAGAGTTTGATATGCATACCTGTATCCACACG
TCTGTCCCTCCCTGCCTTTCCCTGTCCTCCCTCTCTCCCCTCCTCCCTCC
CTCCCTCCCTTCTTCGCAGGTGCCTTGGTTCGAGGCATGGTCAACACGGG
ACATATCATCACGGCCGCCGGTGAGGGAGGGAGGGAGGGAGGGAGAGAGG
AATTGACAGGGGGGAGAGAGCGAGGGATGAGGATGGCTCCTGTTCTTGTT
GTCACCCTGAAGTAGAGGGGGTGGAAGAAGGGAGGGATGGAGGGAGAGGA
GGACGGTTCATACTCACTCCACTTACTCATGCAATTCCCAGGTGTGATTA
TGGCTGTGGCTTTTTCAGGATTGCTCTTCTCCTCGGAGGTAGGTTTAAAA
TGGGAAAGAGGACGGGAGGGAAGGAGGGAGAGAGGGAGGGACGATAAGAC
AATGCTCATCTTTCCAGATCATCACATGTCTCATCTGTTCCCTGCCTCCC
TCATCCCCATCCACCTCCCTTTAGCTCATCCTCAATCAAACCGCCTTCCT
CCTTGTTCTCTCCGTCCTGCTCGACACCTTCGTCGTGCGTACATTCCTCG
TTCCCATCCTAATGACATGGAGTGGTGCTAAGACATGGTGGCCAAGAGGA
AACCTTCCTGCCCCTACGAAGGACCATGCCGTCCCTTGCGTTAGAAGTGG
AAACGAGAATCAAAGCTAG
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Coding sequence (CDS) from alignment at chr21:777502..778420-

>NO21G02550.1 ID=NO21G02550.1|Name=NO21G02550.1|organism=Nannochloropsis oceanica|type=CDS|length=315bp|location=Sequence derived from alignment at chr21:777502..778420- (Nannochloropsis oceanica)
ATGGAGGGACACACCGATCAAGGTGCCTTGGTTCGAGGCATGGTCAACAC
GGGACATATCATCACGGCCGCCGGTGTGATTATGGCTGTGGCTTTTTCAG
GATTGCTCTTCTCCTCGGAGCTCATCCTCAATCAAACCGCCTTCCTCCTT
GTTCTCTCCGTCCTGCTCGACACCTTCGTCGTGCGTACATTCCTCGTTCC
CATCCTAATGACATGGAGTGGTGCTAAGACATGGTGGCCAAGAGGAAACC
TTCCTGCCCCTACGAAGGACCATGCCGTCCCTTGCGTTAGAAGTGGAAAC
GAGAATCAAAGCTAG
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Synonyms
Publications