NO21G02540, NO21G02540 (gene) Nannochloropsis oceanica

Overview
NameNO21G02540
Unique NameNO21G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2710
Alignment locationchr21:772870..775579 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:772870..775579 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR000014PAS
Homology
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BLAST of NO21G02540 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-13
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:  192 RRATKEDLSGLTAEEKLGRRKTRARMYNRLSCNRRKRLHDELRTDMNRMGIYKNIIDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSAGKVEKVRCGVVT 326
            +RA + DLSG T  EK  RRK RARMY+     R+      LR  +  + +YK ++D+AP++  V+S+D Q++VLY N A        P   VG S W +VH++DK  V+ A ++    K   +V + RC + T
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKE--EVGRARCRLGT 409
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BLAST of NO21G02540 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 3.500e-11
Identity = 53/175 (30.29%), Postives = 91/175 (52.00%), Query Frame = 0 
Query:  190 KQRRATKEDLSGLTAEEKLGRRKTRARMYNRLSCNRRKRLHDELRTDMNRMGIYKNIIDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEP-----TQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSAGKVEKVRC------GVVTKY----PGVYMSVRMTLANGVQGIVCIM 350
            K+RRA + D S LT EE++  +K RAR Y+ ++  R+ +  + LR ++ R+ +YK +++ APD M ++S+D Q ++L+ NK +  +    P       L G   W  +   D++A+  A+  V   K    V  V C      G V K+    P   + V +TL +  QG++ I+
Sbjct:  324 KKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCKHL--VRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO21G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.13.700e-1337.31conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.13.500e-1130.29pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02540.1NO21G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02540.1NO21G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02540 ID=NO21G02540|Name=NO21G02540|organism=Nannochloropsis oceanica|type=gene|length=2710bp
ATATGTCCCATCCCCCATCTCACGGTGTGATCCTCCCACAGACATGTCTC
ACAAAGAACAGTCTCAGTCCACTCGAGCTTCCAATGACGTTCGCTCCGTA
TAATACACATTACTTCTTATGTAGGAGTATCAGAGGCTTTGGTCAGAATC
AGTGTGACTGTCCCAATGAAGCAGCAATACAGCTTATTGGCTGCAGCTGC
TAACCCCTGTCCCGTCTCCACGCCACCGAATTCCTCGCCTTGGGCCTCTT
TGAACGCCCTGGCATGGGCTGATGATTGGGACATGTGCTTTTTTTTATTA
GCTCGGTACTACAGTGTTGTAATTCATAATATGTCCCATCCCCCATCTCA
CGGTGTGATCCTCCCACAGACATGTCTCACAAAGAACAGTCTCAGTCCAC
TCGAGCTTCCAATGACGTTCGCTCCGTATAATACACATTACTTCTTATGT
AGGAGTATCAGAGGCTTTGGTCAGAATCAGTGTGACTGTCCCAATGAAGC
AGCAATACAGCTTATTGGCTGCAGCTGCTAACCCCTGTCCCGTCTCCACG
CCACCGAATTCCTCGCCTTGGGCCTCTTTGATATTAACGGCGAATCATGg
tacgtttccaaggcaataagtgtccgcagcccccagccctgccacctata
tgtacacagtccccccactcgcttccaaaaacacaatctcatctaatccg
cacgcacgggaacgcacgttgatggaaagtacacaaaaatatcttatcat
ttcacctcatttataatttcctcattgttttatagccattatgttttttg
tcaccaataaggtgacatacttctgcgacactaacccaaaaaaataggcc
ctctccaggtcgttcacatgcgtctatatacgcactgtctgtatgcaacg
catctattcgtaaacaaattcaattgcacacatacataattcccaacaca
cacaattttaagAACTCCAAAAGCAGGCATTGAACAACTCCTTCCTTATC
CAGGACCAACAACACTTCCGCCCGTCACCCCTTCATCAGCACCCGACTCT
CAAGTCTAAGACTCCCAGTATACCCTCCCAGGTCTCTCCATCTTTTCAAA
CACAGCAGCAGCAGCACCACCACCACCACCACCGGCAGCAGCATCTTGAC
CAAAATCACGCGCTATTGCAGCTTCACCACTCCCAACAATGCCAAATGCA
GCTGCTCAAAATGCAGCATGTGATGGCGTCAACTGGGTGCTTTGCGATGA
ACGAATTCCTCCCTACTGAGTGCGTGAAGGCCAAGCTCTACCCATTGATT
GCACCGCTAGGCGAGACCCTCCTGCCGCTGCAAGATATCCAAGCAGGTGT
GATGAGCGTGTCAGCGGGGCTGCTGTCTGGCAAATATTTCAAGATCATGG
GAAAGTACCTTCCGgtaagggacattagagatacgtgcttgttggtgctt
gcatgttcggtattatctatttggagaactctctctttctctccatttac
tcaggaaccctaaccctgtacaacagAGCATAGAAAAGCAGCGACGAGCG
ACGAAAGAAGATTTGTCGGGCTTAACGGCGGAGGAGAAGCTAGGGCGACG
CAAGACGCGCGCACGCATGTACAACCGCTTGTCTTGCAACCGCCGCAAAC
GGTTACATGACGAATTGCGCACCGACATGAACCGCATGGGCATCTACAAG
AATATTATAGACGATGCGCCGGACATGATGTGTGTTATATCATCCGATAT
CCAGAGCCAGGTGCTCTACGTCAATAAGGCTGCTCGATGCGTCCTCCCCA
CTGAGCCCACGCAGCTGGTGGGGTCCAGCTTCTGGAACATCGTCCACAAA
GATGACAAGATGGCGGTACTCACGGCCCTCTCCGCCGTCACCACCCTCAA
GTCGGCCGGGAAAGTAGAGAAAGTACGCTGCGGTGTCGTCACCAAGTATC
CCGGTGTCTATATGTCTGTGCGGATGACGCTAGCGAATGGAGTGCAGGGT
ATTGTCTGCATAATGTGCCATAAAGATCCGCTGGTTTCGCCTGATGGACG
GCCGTGTGTCATGTAGGGCTCTCTTTTTTTGGGCAGCATAATTCTTTACA
ATGGTTATTCGACTGATCATTTACAATGGTTAGTTGTTTAGACAAGGAAC
TTTGGCAGCGATTACGACCGAAGTGGAACTAATACGAAGCCTGTATAATA
ATAAAAATTGGTCTTTCCCTCGTTGACTGTCTAATGCGTTTCCCGTGACG
TTACCTATTAAGCAAATCAGGAAAGGGAAATCAAAAAGTTCTTCTCATAT
GCCCAGTGTCAAAATATTTGATAAAAACAGACCCTATTAGGACTGCAGTC
CTACGAGTAGCTGTCCAAAACAGATGAGGAGAAAGTTCACACGTGCAAAC
ATGGTGATGGGGAAGAAAGGGAGATGGCTATGTCTGATATGAGATGAATT
TTAATTTTATTGAATTACGGCGATCTGTAGCGAGGGAGAGAAATAGAGGA
GGACACGACTAACCAGGTGGACATTTGAATGCATGTATGACAGAGAAAGG
AAATAGAGAAGTATGATATACATATTAAACCCGTAAAAGTCTTGGTATGA
TACGTAATCAGACGACAGTGATAAGCCCGTCCTTAACAGGGAGAGTCATA
GAGACACGATATCTGATCGGCAATCTTTTTAAAGAACATATGGGACGGAC
TTTACAGAAA
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protein sequence of NO21G02540.1

>NO21G02540.1-protein ID=NO21G02540.1-protein|Name=NO21G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MKQQYSLLAAAANPCPVSTPPNSSPWASLILTANHELQKQALNNSFLIQD
QQHFRPSPLHQHPTLKSKTPSIPSQVSPSFQTQQQQHHHHHHRQQHLDQN
HALLQLHHSQQCQMQLLKMQHVMASTGCFAMNEFLPTECVKAKLYPLIAP
LGETLLPLQDIQAGVMSVSAGLLSGKYFKIMGKYLPSIEKQRRATKEDLS
GLTAEEKLGRRKTRARMYNRLSCNRRKRLHDELRTDMNRMGIYKNIIDDA
PDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAV
LTALSAVTTLKSAGKVEKVRCGVVTKYPGVYMSVRMTLANGVQGIVCIMC
HKDPLVSPDGRPCVM*
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Synonyms
Publications