NO21G02540.1, NO21G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02540.1
Unique NameNO21G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2235
Alignment locationchr21:772870..775579 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:772870..775579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02540.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 86.7 bits (213), Expect = 1.700e-13
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = 0 
Query:  192 RRATKEDLSGLTAEEKLGRRKTRARMYNRLSCNRRKRLHDELRTDMNRMGIYKNIIDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAVLTALSAVT--------------TLKSAGKVEKVRCGVVTKYPGVYMSVRMTLANGVQGIVCIMCHKD 354
            +RA + DLSG T  EK  RRK RARMY+     R+      LR  +  + +YK ++D+AP++  V+S+D Q++VLY N A        P   VG S W +VH++DK  V+ A ++                T K  G  E    G         + V +++  G QG++ ++  +D
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEKEEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO21G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceEWM23721.1
Match NameE-valueIdentityDescription
EWM23721.11.700e-1331.25conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02540NO21G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02540.1NO21G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02540.1.cds1NO21G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02540.1.cds2NO21G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02540.1.cds3NO21G02540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02540.1 ID=NO21G02540.1|Name=NO21G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2235bp
ATATGTCCCATCCCCCATCTCACGGTGTGATCCTCCCACAGACATGTCTC
ACAAAGAACAGTCTCAGTCCACTCGAGCTTCCAATGACGTTCGCTCCGTA
TAATACACATTACTTCTTATGTAGGAGTATCAGAGGCTTTGGTCAGAATC
AGTGTGACTGTCCCAATGAAGCAGCAATACAGCTTATTGGCTGCAGCTGC
TAACCCCTGTCCCGTCTCCACGCCACCGAATTCCTCGCCTTGGGCCTCTT
TGAACGCCCTGGCATGGGCTGATGATTGGGACATGTGCTTTTTTTTATTA
GCTCGGTACTACAGTGTTGTAATTCATAATATGTCCCATCCCCCATCTCA
CGGTGTGATCCTCCCACAGACATGTCTCACAAAGAACAGTCTCAGTCCAC
TCGAGCTTCCAATGACGTTCGCTCCGTATAATACACATTACTTCTTATGT
AGGAGTATCAGAGGCTTTGGTCAGAATCAGTGTGACTGTCCCAATGAAGC
AGCAATACAGCTTATTGGCTGCAGCTGCTAACCCCTGTCCCGTCTCCACG
CCACCGAATTCCTCGCCTTGGGCCTCTTTGATATTAACGGCGAATCATGA
ACTCCAAAAGCAGGCATTGAACAACTCCTTCCTTATCCAGGACCAACAAC
ACTTCCGCCCGTCACCCCTTCATCAGCACCCGACTCTCAAGTCTAAGACT
CCCAGTATACCCTCCCAGGTCTCTCCATCTTTTCAAACACAGCAGCAGCA
GCACCACCACCACCACCACCGGCAGCAGCATCTTGACCAAAATCACGCGC
TATTGCAGCTTCACCACTCCCAACAATGCCAAATGCAGCTGCTCAAAATG
CAGCATGTGATGGCGTCAACTGGGTGCTTTGCGATGAACGAATTCCTCCC
TACTGAGTGCGTGAAGGCCAAGCTCTACCCATTGATTGCACCGCTAGGCG
AGACCCTCCTGCCGCTGCAAGATATCCAAGCAGGTGTGATGAGCGTGTCA
GCGGGGCTGCTGTCTGGCAAATATTTCAAGATCATGGGAAAGTACCTTCC
GAGCATAGAAAAGCAGCGACGAGCGACGAAAGAAGATTTGTCGGGCTTAA
CGGCGGAGGAGAAGCTAGGGCGACGCAAGACGCGCGCACGCATGTACAAC
CGCTTGTCTTGCAACCGCCGCAAACGGTTACATGACGAATTGCGCACCGA
CATGAACCGCATGGGCATCTACAAGAATATTATAGACGATGCGCCGGACA
TGATGTGTGTTATATCATCCGATATCCAGAGCCAGGTGCTCTACGTCAAT
AAGGCTGCTCGATGCGTCCTCCCCACTGAGCCCACGCAGCTGGTGGGGTC
CAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACTCACGG
CCCTCTCCGCCGTCACCACCCTCAAGTCGGCCGGGAAAGTAGAGAAAGTA
CGCTGCGGTGTCGTCACCAAGTATCCCGGTGTCTATATGTCTGTGCGGAT
GACGCTAGCGAATGGAGTGCAGGGTATTGTCTGCATAATGTGCCATAAAG
ATCCGCTGGTTTCGCCTGATGGACGGCCGTGTGTCATGTAGGGCTCTCTT
TTTTTGGGCAGCATAATTCTTTACAATGGTTATTCGACTGATCATTTACA
ATGGTTAGTTGTTTAGACAAGGAACTTTGGCAGCGATTACGACCGAAGTG
GAACTAATACGAAGCCTGTATAATAATAAAAATTGGTCTTTCCCTCGTTG
ACTGTCTAATGCGTTTCCCGTGACGTTACCTATTAAGCAAATCAGGAAAG
GGAAATCAAAAAGTTCTTCTCATATGCCCAGTGTCAAAATATTTGATAAA
AACAGACCCTATTAGGACTGCAGTCCTACGAGTAGCTGTCCAAAACAGAT
GAGGAGAAAGTTCACACGTGCAAACATGGTGATGGGGAAGAAAGGGAGAT
GGCTATGTCTGATATGAGATGAATTTTAATTTTATTGAATTACGGCGATC
TGTAGCGAGGGAGAGAAATAGAGGAGGACACGACTAACCAGGTGGACATT
TGAATGCATGTATGACAGAGAAAGGAAATAGAGAAGTATGATATACATAT
TAAACCCGTAAAAGTCTTGGTATGATACGTAATCAGACGACAGTGATAAG
CCCGTCCTTAACAGGGAGAGTCATAGAGACACGATATCTGATCGGCAATC
TTTTTAAAGAACATATGGGACGGACTTTACAGAAA
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protein sequence of NO21G02540.1

>NO21G02540.1-protein ID=NO21G02540.1-protein|Name=NO21G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MKQQYSLLAAAANPCPVSTPPNSSPWASLILTANHELQKQALNNSFLIQD
QQHFRPSPLHQHPTLKSKTPSIPSQVSPSFQTQQQQHHHHHHRQQHLDQN
HALLQLHHSQQCQMQLLKMQHVMASTGCFAMNEFLPTECVKAKLYPLIAP
LGETLLPLQDIQAGVMSVSAGLLSGKYFKIMGKYLPSIEKQRRATKEDLS
GLTAEEKLGRRKTRARMYNRLSCNRRKRLHDELRTDMNRMGIYKNIIDDA
PDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAV
LTALSAVTTLKSAGKVEKVRCGVVTKYPGVYMSVRMTLANGVQGIVCIMC
HKDPLVSPDGRPCVM*
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mRNA from alignment at chr21:772870..775579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02540.1 ID=NO21G02540.1|Name=NO21G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2710bp|location=Sequence derived from alignment at chr21:772870..775579- (Nannochloropsis oceanica)
ATATGTCCCATCCCCCATCTCACGGTGTGATCCTCCCACAGACATGTCTC
ACAAAGAACAGTCTCAGTCCACTCGAGCTTCCAATGACGTTCGCTCCGTA
TAATACACATTACTTCTTATGTAGGAGTATCAGAGGCTTTGGTCAGAATC
AGTGTGACTGTCCCAATGAAGCAGCAATACAGCTTATTGGCTGCAGCTGC
TAACCCCTGTCCCGTCTCCACGCCACCGAATTCCTCGCCTTGGGCCTCTT
TGAACGCCCTGGCATGGGCTGATGATTGGGACATGTGCTTTTTTTTATTA
GCTCGGTACTACAGTGTTGTAATTCATAATATGTCCCATCCCCCATCTCA
CGGTGTGATCCTCCCACAGACATGTCTCACAAAGAACAGTCTCAGTCCAC
TCGAGCTTCCAATGACGTTCGCTCCGTATAATACACATTACTTCTTATGT
AGGAGTATCAGAGGCTTTGGTCAGAATCAGTGTGACTGTCCCAATGAAGC
AGCAATACAGCTTATTGGCTGCAGCTGCTAACCCCTGTCCCGTCTCCACG
CCACCGAATTCCTCGCCTTGGGCCTCTTTGATATTAACGGCGAATCATGG
TACGTTTCCAAGGCAATAAGTGTCCGCAGCCCCCAGCCCTGCCACCTATA
TGTACACAGTCCCCCCACTCGCTTCCAAAAACACAATCTCATCTAATCCG
CACGCACGGGAACGCACGTTGATGGAAAGTACACAAAAATATCTTATCAT
TTCACCTCATTTATAATTTCCTCATTGTTTTATAGCCATTATGTTTTTTG
TCACCAATAAGGTGACATACTTCTGCGACACTAACCCAAAAAAATAGGCC
CTCTCCAGGTCGTTCACATGCGTCTATATACGCACTGTCTGTATGCAACG
CATCTATTCGTAAACAAATTCAATTGCACACATACATAATTCCCAACACA
CACAATTTTAAGAACTCCAAAAGCAGGCATTGAACAACTCCTTCCTTATC
CAGGACCAACAACACTTCCGCCCGTCACCCCTTCATCAGCACCCGACTCT
CAAGTCTAAGACTCCCAGTATACCCTCCCAGGTCTCTCCATCTTTTCAAA
CACAGCAGCAGCAGCACCACCACCACCACCACCGGCAGCAGCATCTTGAC
CAAAATCACGCGCTATTGCAGCTTCACCACTCCCAACAATGCCAAATGCA
GCTGCTCAAAATGCAGCATGTGATGGCGTCAACTGGGTGCTTTGCGATGA
ACGAATTCCTCCCTACTGAGTGCGTGAAGGCCAAGCTCTACCCATTGATT
GCACCGCTAGGCGAGACCCTCCTGCCGCTGCAAGATATCCAAGCAGGTGT
GATGAGCGTGTCAGCGGGGCTGCTGTCTGGCAAATATTTCAAGATCATGG
GAAAGTACCTTCCGGTAAGGGACATTAGAGATACGTGCTTGTTGGTGCTT
GCATGTTCGGTATTATCTATTTGGAGAACTCTCTCTTTCTCTCCATTTAC
TCAGGAACCCTAACCCTGTACAACAGAGCATAGAAAAGCAGCGACGAGCG
ACGAAAGAAGATTTGTCGGGCTTAACGGCGGAGGAGAAGCTAGGGCGACG
CAAGACGCGCGCACGCATGTACAACCGCTTGTCTTGCAACCGCCGCAAAC
GGTTACATGACGAATTGCGCACCGACATGAACCGCATGGGCATCTACAAG
AATATTATAGACGATGCGCCGGACATGATGTGTGTTATATCATCCGATAT
CCAGAGCCAGGTGCTCTACGTCAATAAGGCTGCTCGATGCGTCCTCCCCA
CTGAGCCCACGCAGCTGGTGGGGTCCAGCTTCTGGAACATCGTCCACAAA
GATGACAAGATGGCGGTACTCACGGCCCTCTCCGCCGTCACCACCCTCAA
GTCGGCCGGGAAAGTAGAGAAAGTACGCTGCGGTGTCGTCACCAAGTATC
CCGGTGTCTATATGTCTGTGCGGATGACGCTAGCGAATGGAGTGCAGGGT
ATTGTCTGCATAATGTGCCATAAAGATCCGCTGGTTTCGCCTGATGGACG
GCCGTGTGTCATGTAGGGCTCTCTTTTTTTGGGCAGCATAATTCTTTACA
ATGGTTATTCGACTGATCATTTACAATGGTTAGTTGTTTAGACAAGGAAC
TTTGGCAGCGATTACGACCGAAGTGGAACTAATACGAAGCCTGTATAATA
ATAAAAATTGGTCTTTCCCTCGTTGACTGTCTAATGCGTTTCCCGTGACG
TTACCTATTAAGCAAATCAGGAAAGGGAAATCAAAAAGTTCTTCTCATAT
GCCCAGTGTCAAAATATTTGATAAAAACAGACCCTATTAGGACTGCAGTC
CTACGAGTAGCTGTCCAAAACAGATGAGGAGAAAGTTCACACGTGCAAAC
ATGGTGATGGGGAAGAAAGGGAGATGGCTATGTCTGATATGAGATGAATT
TTAATTTTATTGAATTACGGCGATCTGTAGCGAGGGAGAGAAATAGAGGA
GGACACGACTAACCAGGTGGACATTTGAATGCATGTATGACAGAGAAAGG
AAATAGAGAAGTATGATATACATATTAAACCCGTAAAAGTCTTGGTATGA
TACGTAATCAGACGACAGTGATAAGCCCGTCCTTAACAGGGAGAGTCATA
GAGACACGATATCTGATCGGCAATCTTTTTAAAGAACATATGGGACGGAC
TTTACAGAAA
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Coding sequence (CDS) from alignment at chr21:772870..775579-

>NO21G02540.1 ID=NO21G02540.1|Name=NO21G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr21:772870..775579- (Nannochloropsis oceanica)
ATGAAGCAGCAATACAGCTTATTGGCTGCAGCTGCTAACCCCTGTCCCGT
CTCCACGCCACCGAATTCCTCGCCTTGGGCCTCTTTGATATTAACGGCGA
ATCATGAACTCCAAAAGCAGGCATTGAACAACTCCTTCCTTATCCAGGAC
CAACAACACTTCCGCCCGTCACCCCTTCATCAGCACCCGACTCTCAAGTC
TAAGACTCCCAGTATACCCTCCCAGGTCTCTCCATCTTTTCAAACACAGC
AGCAGCAGCACCACCACCACCACCACCGGCAGCAGCATCTTGACCAAAAT
CACGCGCTATTGCAGCTTCACCACTCCCAACAATGCCAAATGCAGCTGCT
CAAAATGCAGCATGTGATGGCGTCAACTGGGTGCTTTGCGATGAACGAAT
TCCTCCCTACTGAGTGCGTGAAGGCCAAGCTCTACCCATTGATTGCACCG
CTAGGCGAGACCCTCCTGCCGCTGCAAGATATCCAAGCAGGTGTGATGAG
CGTGTCAGCGGGGCTGCTGTCTGGCAAATATTTCAAGATCATGGGAAAGT
ACCTTCCGAGCATAGAAAAGCAGCGACGAGCGACGAAAGAAGATTTGTCG
GGCTTAACGGCGGAGGAGAAGCTAGGGCGACGCAAGACGCGCGCACGCAT
GTACAACCGCTTGTCTTGCAACCGCCGCAAACGGTTACATGACGAATTGC
GCACCGACATGAACCGCATGGGCATCTACAAGAATATTATAGACGATGCG
CCGGACATGATGTGTGTTATATCATCCGATATCCAGAGCCAGGTGCTCTA
CGTCAATAAGGCTGCTCGATGCGTCCTCCCCACTGAGCCCACGCAGCTGG
TGGGGTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTA
CTCACGGCCCTCTCCGCCGTCACCACCCTCAAGTCGGCCGGGAAAGTAGA
GAAAGTACGCTGCGGTGTCGTCACCAAGTATCCCGGTGTCTATATGTCTG
TGCGGATGACGCTAGCGAATGGAGTGCAGGGTATTGTCTGCATAATGTGC
CATAAAGATCCGCTGGTTTCGCCTGATGGACGGCCGTGTGTCATGTAG
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Synonyms
Publications