NO21G02480, NO21G02480 (gene) Nannochloropsis oceanica

Overview
NameNO21G02480
Unique NameNO21G02480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2807
Alignment locationchr21:753484..756290 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:753484..756290 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035965PAS-like_dom_sf
IPR000014PAS
Homology
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BLAST of NO21G02480 vs. NCBI_GenBank
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 3.100e-14
Identity = 53/134 (39.55%), Postives = 78/134 (58.21%), Query Frame = 0 
Query:  258 RRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLCDDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVT 392
            +RA + +LSG T  EK ERRK RARMY+   R+R +     L   V  + +YK +VD+AP++  V+S+D Q++VLY N A        P   VG S W +VH++DK  V+ A ++    K   +V + RCR+ T
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEK--EEVGRARCRLGT 409
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BLAST of NO21G02480 vs. NCBI_GenBank
Match: EWM23655.1 (pas pac sensor hybrid histidine kinase [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 5.500e-11
Identity = 55/180 (30.56%), Postives = 94/180 (52.22%), Query Frame = 0 
Query:  251 LPSIEKQRRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLCDDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEP-----TQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRV------VTKH----PAVYMSVRMTLANGMQGIVCVM 416
            L ++ K+RRA + + S LT EE+++ +K RAR Y+ ++R+R  +    L  +V R+ +YK +V+ APD M ++S+D Q ++L+ NK +  +    P       L G   W  +   D++A+  A+  V   K    V  V C V      V KH    P   + V +TL +  QG++ ++
Sbjct:  319 LTTLGKKRRAPRMDFSKLTPEEQIQWKKARARKYSAMARERQSKKEEALRAEVGRLQVYKTLVEAAPDAMLLLSNDAQGRILFANKESEKLFGFIPKGGAEKPLPGRCLWEWLDVTDRVAIFAAIGKVVLCK--HLVRAVPCTVWLPSGSVPKHDARGPQQSLKVLITLRSSAQGLILII 496
The following BLAST results are available for this feature:
BLAST of NO21G02480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM23721.13.100e-1439.55conserved unknown protein [Nannochloropsis gaditan... [more]
EWM23655.15.500e-1130.56pas pac sensor hybrid histidine kinase [Nannochlor... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR031ncniR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02480.1NO21G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|29182gene_12119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02480.1NO21G02480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02480 ID=NO21G02480|Name=NO21G02480|organism=Nannochloropsis oceanica|type=gene|length=2807bp
CTGGCCAAATGCCCTTGCATGGGCTCATCGAGTCATGACCCTGTGCTTTT
GACCTCAGCATTATGTGATATGGCTGTTTGTATAGAACAACTATCTCCCG
ATCCCAATCTCACGGTGTAATCGCCCACCTACTGGCAGACACAGATCACA
GTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCGCTTACACATCTTCTT
ATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAGCAGCGGCGCCATCAG
AACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAAGCTTTATGGTTTGTT
GCCTATTTCCTCTGACGATAGAATGACATATGACGGTGCTGCAGCCCTGT
GCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCCGCTGCTGACTCCCTC
CTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGCCTCTTATCTCTCAGC
AGCAAATCACGgtacgtttttcaaacgcgattcactcgatccgctttata
cctcatccctggcctcgtacgtatcccttcctcctccccacctccttgtt
ccaccccctcgtccttcccgcccttctcctcccttctccttctccccatc
ctcctcctcgcttcctcctccccccttctcttccccccatcctccctctc
ctttcctcctcctccactcctccttattccttctcttcctaccccatcct
ttttcgccctccttctccttctcccacctcctcccctccccgcctccctc
cttttcttactcctcttcgttctccttcctccctcccccccgcgtatttc
ctttgcgcaaacttttcaacttgaactggtatttcccaatcagcgtatcc
attgacaggatttgtaggtttacaatcacaggctttatgatcattgaggt
tcattgtgctagtgctcactttttgtttgaatttatggcggggacaatat
gtgatatggttaaagagactgctccctccattgccattatttgtttcgct
atcagcattgtgagcgggaaataggcgcgtcccaggtcaggcaaccctct
acgtgtacaccggctacatgtagcgtatctattcatttagacaagtccgc
tctctcacatacacatataatcctccatacacacagTTTTAGAACTTCAA
AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA
ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA
CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA
TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA
AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC
CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT
ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG
TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC
CTTCCGgtaagggatatgatggatatgtgctgggtgcttgagtgtttggt
gtgatctattttgggcactcactctttctctccatttactcgttcttcct
acagAGCATAGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCT
TAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATGCGCGCACGCATGTAC
AACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCGTAGTGACCTGTGTGA
TGACGTGAACCGCATGGGCATCTACAAGAATATTGTCGACGATGCGCCGG
ACATGATGTGTGTTATATCATCAGATATTCAGAGCCAGGTGCTCTACGTC
AATAAAGCTGCTCGATGTGTCCTCCCCACTGAGCCCACGCAGCTGGTGGG
GTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACTCA
CGGCTCTCTCCGCCGTCACCACCCTCAAGTCGGCCAGGAAAGTAGAGAAA
GTACGCTGCCGTGTCGTCACCAAGCATCCCGCTGTCTATATGTCTGTGCG
GATGACGCTAGCGAATGGAATGCAGGGTATTGTCTGTGTAATGTGCCACG
AAGATCCCCTGGCAGCCATTTTGTGCGTGTCGCCTGATGGACGGCCGTCT
ATGACATAGGGTGCTCTCTTTCTATATATTTCTCTAAATTATGATCTAAC
AATGAGTGGTCGTGTAGGTAAGGCACTCGCGGCGGACACGGCTGAGGGCG
TGCTTTGACTTCCACGAGGACATAATGTGGCCCGATCTATTGCTATCAGG
GACAAGACTGTCCGACCGGAGTCAGTGTATCGACCATGAAGATGATGCAT
TTCCGCAATATGTATAAGAGAAGGCTCGAATAAGCCCATATTGTACTGGT
CCGTCCCTTCTTGACTGATTGCTGCTTCCTTCCCATGACGTTGACGGTTG
GGTGATGCAGGGAAGGTGAGTCAGGAGGTCTTTTCTGCCTGCATCACCAG
AGACGAAACGTTTCAGGAGCACTGACTGTTAAGTGGCCGCAGTTTTACAA
GTGACTATACACTAGATGAGGTAGAAGGTCACAAGTGCAAAGACGGTGAT
GAGATTGCAGAGAAAGTGATGGGAAAGTATAGAAAATGGGTCTGTGTAAT
CCGAGATTATTTTTACTGTATCAGGCGATAGGAGAAAGAAGGAATGGCAA
GGGGGGG
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protein sequence of NO21G02480.1

>NO21G02480.1-protein ID=NO21G02480.1-protein|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MTFAYTSSYAPIGGCGPTAEQRRHQNQCHWPRGMKQKLYGLLPISSDDRM
TYDGAAALCSLGCSLATRSAAADSLLVSTPPYSSPWASYLSAANHVLELQ
KHTADKSSQFFLTRHQQHFSLSPVHQHPTLQRETTNVLSQVSPSSQPQQQ
QQQQQQQQQKQRQHFKYPPLQLHSTPECLAQSVKKQCVMASIDTFPMNEF
PLPEHVEAELYPPIAPLSQTFLPLQEIQAGVMGVSVGLLPGRCSKIMGKY
LPSIEKQRRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLC
DDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLV
GSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVTKHPAVYMSV
RMTLANGMQGIVCVMCHEDPLAAILCVSPDGRPSMT*
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Synonyms
Publications