NO21G02480.1, NO21G02480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02480.1
Unique NameNO21G02480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2034
Alignment locationchr21:753484..756290 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:753484..756290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02480.1 vs.
Match: EWM23721.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 91.7 bits (226), Expect = 6.200e-15
Identity = 62/178 (34.83%), Postives = 95/178 (53.37%), Query Frame = 0 
Query:  258 RRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLCDDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLVGSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVT-------------KHPAVYMS---VRMTLANGMQGIVCVMCHED 420
            +RA + +LSG T  EK ERRK RARMY+   R+R +     L   V  + +YK +VD+AP++  V+S+D Q++VLY N A        P   VG S W +VH++DK  V+ A ++    K   +V + RCR+ T             +   V +S   V +++  G QG++ V+  ED
Sbjct:  278 KRARRTDLSGYTPGEKQERRKERARMYSAQVRERQNAELHALRQQVQALSVYKLMVDEAPEIFAVLSADSQAKVLYANAAFARFFLCHPESCVGRSVWEVVHREDKETVMGAFASAVMEK--EEVGRARCRLGTSKGQGSKEAGGAGREVPVAVSEVPVAVSVRRGTQGLILVIRRED 453
The following BLAST results are available for this feature:
BLAST of NO21G02480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23721.16.200e-1534.83conserved unknown protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02480NO21G02480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02480.1NO21G02480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02480.1.cds1NO21G02480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02480.1.cds2NO21G02480.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02480.1.cds3NO21G02480.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp
CTGGCCAAATGCCCTTGCATGGGCTCATCGAGTCATGACCCTGTGCTTTT
GACCTCAGCATTATGTGATATGGCTGTTTGTATAGAACAACTATCTCCCG
ATCCCAATCTCACGGTGTAATCGCCCACCTACTGGCAGACACAGATCACA
GTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCGCTTACACATCTTCTT
ATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAGCAGCGGCGCCATCAG
AACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAAGCTTTATGGTTTGTT
GCCTATTTCCTCTGACGATAGAATGACATATGACGGTGCTGCAGCCCTGT
GCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCCGCTGCTGACTCCCTC
CTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGCCTCTTATCTCTCAGC
AGCAAATCACGTTTTAGAACTTCAAAAGCACACGGCCGACAAGTCATCGC
AATTCTTCCTGACCCGGCACCAGCAACACTTCAGCCTATCGCCCGTTCAT
CAACACCCAACCCTTCAGCGTGAGACGACCAATGTACTCTCCCAGGTCTC
GCCGTCTTCTCAACCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGAAGCAGCGGCAGCATTTCAAATATCCGCCGCTACAGCTCCATTCCACC
CCAGAATGCCTAGCGCAGTCGGTCAAGAAGCAGTGCGTGATGGCGTCGAT
CGACACTTTTCCGATGAATGAATTCCCGCTCCCCGAGCACGTGGAGGCCG
AGCTCTACCCACCGATTGCACCGCTATCCCAGACCTTCCTGCCGCTGCAA
GAGATCCAAGCAGGTGTGATGGGTGTGTCGGTGGGATTACTGCCTGGCAG
ATGCTCCAAGATCATGGGAAAGTACCTTCCGAGCATAGAGAAGCAGCGAC
GAGCGACGAAAGAGAACTTATCGGGCTTAACGGCAGAGGAGAAGCTAGAG
CGACGCAAGATGCGCGCACGCATGTACAACCGCCTGTCTCGTCAACGCTG
CGACCAGCTGCGTAGTGACCTGTGTGATGACGTGAACCGCATGGGCATCT
ACAAGAATATTGTCGACGATGCGCCGGACATGATGTGTGTTATATCATCA
GATATTCAGAGCCAGGTGCTCTACGTCAATAAAGCTGCTCGATGTGTCCT
CCCCACTGAGCCCACGCAGCTGGTGGGGTCCAGCTTCTGGAACATCGTCC
ACAAAGATGACAAGATGGCGGTACTCACGGCTCTCTCCGCCGTCACCACC
CTCAAGTCGGCCAGGAAAGTAGAGAAAGTACGCTGCCGTGTCGTCACCAA
GCATCCCGCTGTCTATATGTCTGTGCGGATGACGCTAGCGAATGGAATGC
AGGGTATTGTCTGTGTAATGTGCCACGAAGATCCCCTGGCAGCCATTTTG
TGCGTGTCGCCTGATGGACGGCCGTCTATGACATAGGGTGCTCTCTTTCT
ATATATTTCTCTAAATTATGATCTAACAATGAGTGGTCGTGTAGGTAAGG
CACTCGCGGCGGACACGGCTGAGGGCGTGCTTTGACTTCCACGAGGACAT
AATGTGGCCCGATCTATTGCTATCAGGGACAAGACTGTCCGACCGGAGTC
AGTGTATCGACCATGAAGATGATGCATTTCCGCAATATGTATAAGAGAAG
GCTCGAATAAGCCCATATTGTACTGGTCCGTCCCTTCTTGACTGATTGCT
GCTTCCTTCCCATGACGTTGACGGTTGGGTGATGCAGGGAAGGTGAGTCA
GGAGGTCTTTTCTGCCTGCATCACCAGAGACGAAACGTTTCAGGAGCACT
GACTGTTAAGTGGCCGCAGTTTTACAAGTGACTATACACTAGATGAGGTA
GAAGGTCACAAGTGCAAAGACGGTGATGAGATTGCAGAGAAAGTGATGGG
AAAGTATAGAAAATGGGTCTGTGTAATCCGAGATTATTTTTACTGTATCA
GGCGATAGGAGAAAGAAGGAATGGCAAGGGGGGG
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protein sequence of NO21G02480.1

>NO21G02480.1-protein ID=NO21G02480.1-protein|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MTFAYTSSYAPIGGCGPTAEQRRHQNQCHWPRGMKQKLYGLLPISSDDRM
TYDGAAALCSLGCSLATRSAAADSLLVSTPPYSSPWASYLSAANHVLELQ
KHTADKSSQFFLTRHQQHFSLSPVHQHPTLQRETTNVLSQVSPSSQPQQQ
QQQQQQQQQKQRQHFKYPPLQLHSTPECLAQSVKKQCVMASIDTFPMNEF
PLPEHVEAELYPPIAPLSQTFLPLQEIQAGVMGVSVGLLPGRCSKIMGKY
LPSIEKQRRATKENLSGLTAEEKLERRKMRARMYNRLSRQRCDQLRSDLC
DDVNRMGIYKNIVDDAPDMMCVISSDIQSQVLYVNKAARCVLPTEPTQLV
GSSFWNIVHKDDKMAVLTALSAVTTLKSARKVEKVRCRVVTKHPAVYMSV
RMTLANGMQGIVCVMCHEDPLAAILCVSPDGRPSMT*
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mRNA from alignment at chr21:753484..756290+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2807bp|location=Sequence derived from alignment at chr21:753484..756290+ (Nannochloropsis oceanica)
CTGGCCAAATGCCCTTGCATGGGCTCATCGAGTCATGACCCTGTGCTTTT
GACCTCAGCATTATGTGATATGGCTGTTTGTATAGAACAACTATCTCCCG
ATCCCAATCTCACGGTGTAATCGCCCACCTACTGGCAGACACAGATCACA
GTCCACTCGGGCCTCTGCCGGCCCAATGACGTTCGCTTACACATCTTCTT
ATGCTCCTATCGGGGGCTGCGGTCCCACCGCTGAGCAGCGGCGCCATCAG
AACCAGTGCCACTGGCCCCGTGGAATGAAGCAGAAGCTTTATGGTTTGTT
GCCTATTTCCTCTGACGATAGAATGACATATGACGGTGCTGCAGCCCTGT
GCAGCCTAGGCTGCAGCTTGGCAACACGCTCCGCCGCTGCTGACTCCCTC
CTCGTCTCTACGCCGCCTTACTCTTCGCCTTGGGCCTCTTATCTCTCAGC
AGCAAATCACGGTACGTTTTTCAAACGCGATTCACTCGATCCGCTTTATA
CCTCATCCCTGGCCTCGTACGTATCCCTTCCTCCTCCCCACCTCCTTGTT
CCACCCCCTCGTCCTTCCCGCCCTTCTCCTCCCTTCTCCTTCTCCCCATC
CTCCTCCTCGCTTCCTCCTCCCCCCTTCTCTTCCCCCCATCCTCCCTCTC
CTTTCCTCCTCCTCCACTCCTCCTTATTCCTTCTCTTCCTACCCCATCCT
TTTTCGCCCTCCTTCTCCTTCTCCCACCTCCTCCCCTCCCCGCCTCCCTC
CTTTTCTTACTCCTCTTCGTTCTCCTTCCTCCCTCCCCCCCGCGTATTTC
CTTTGCGCAAACTTTTCAACTTGAACTGGTATTTCCCAATCAGCGTATCC
ATTGACAGGATTTGTAGGTTTACAATCACAGGCTTTATGATCATTGAGGT
TCATTGTGCTAGTGCTCACTTTTTGTTTGAATTTATGGCGGGGACAATAT
GTGATATGGTTAAAGAGACTGCTCCCTCCATTGCCATTATTTGTTTCGCT
ATCAGCATTGTGAGCGGGAAATAGGCGCGTCCCAGGTCAGGCAACCCTCT
ACGTGTACACCGGCTACATGTAGCGTATCTATTCATTTAGACAAGTCCGC
TCTCTCACATACACATATAATCCTCCATACACACAGTTTTAGAACTTCAA
AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA
ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA
CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA
TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA
AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC
CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT
ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG
TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC
CTTCCGGTAAGGGATATGATGGATATGTGCTGGGTGCTTGAGTGTTTGGT
GTGATCTATTTTGGGCACTCACTCTTTCTCTCCATTTACTCGTTCTTCCT
ACAGAGCATAGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGGCT
TAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATGCGCGCACGCATGTAC
AACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCGTAGTGACCTGTGTGA
TGACGTGAACCGCATGGGCATCTACAAGAATATTGTCGACGATGCGCCGG
ACATGATGTGTGTTATATCATCAGATATTCAGAGCCAGGTGCTCTACGTC
AATAAAGCTGCTCGATGTGTCCTCCCCACTGAGCCCACGCAGCTGGTGGG
GTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACTCA
CGGCTCTCTCCGCCGTCACCACCCTCAAGTCGGCCAGGAAAGTAGAGAAA
GTACGCTGCCGTGTCGTCACCAAGCATCCCGCTGTCTATATGTCTGTGCG
GATGACGCTAGCGAATGGAATGCAGGGTATTGTCTGTGTAATGTGCCACG
AAGATCCCCTGGCAGCCATTTTGTGCGTGTCGCCTGATGGACGGCCGTCT
ATGACATAGGGTGCTCTCTTTCTATATATTTCTCTAAATTATGATCTAAC
AATGAGTGGTCGTGTAGGTAAGGCACTCGCGGCGGACACGGCTGAGGGCG
TGCTTTGACTTCCACGAGGACATAATGTGGCCCGATCTATTGCTATCAGG
GACAAGACTGTCCGACCGGAGTCAGTGTATCGACCATGAAGATGATGCAT
TTCCGCAATATGTATAAGAGAAGGCTCGAATAAGCCCATATTGTACTGGT
CCGTCCCTTCTTGACTGATTGCTGCTTCCTTCCCATGACGTTGACGGTTG
GGTGATGCAGGGAAGGTGAGTCAGGAGGTCTTTTCTGCCTGCATCACCAG
AGACGAAACGTTTCAGGAGCACTGACTGTTAAGTGGCCGCAGTTTTACAA
GTGACTATACACTAGATGAGGTAGAAGGTCACAAGTGCAAAGACGGTGAT
GAGATTGCAGAGAAAGTGATGGGAAAGTATAGAAAATGGGTCTGTGTAAT
CCGAGATTATTTTTACTGTATCAGGCGATAGGAGAAAGAAGGAATGGCAA
GGGGGGG
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Coding sequence (CDS) from alignment at chr21:753484..756290+

>NO21G02480.1 ID=NO21G02480.1|Name=NO21G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at chr21:753484..756290+ (Nannochloropsis oceanica)
ATGACGTTCGCTTACACATCTTCTTATGCTCCTATCGGGGGCTGCGGTCC
CACCGCTGAGCAGCGGCGCCATCAGAACCAGTGCCACTGGCCCCGTGGAA
TGAAGCAGAAGCTTTATGGTTTGTTGCCTATTTCCTCTGACGATAGAATG
ACATATGACGGTGCTGCAGCCCTGTGCAGCCTAGGCTGCAGCTTGGCAAC
ACGCTCCGCCGCTGCTGACTCCCTCCTCGTCTCTACGCCGCCTTACTCTT
CGCCTTGGGCCTCTTATCTCTCAGCAGCAAATCACGTTTTAGAACTTCAA
AAGCACACGGCCGACAAGTCATCGCAATTCTTCCTGACCCGGCACCAGCA
ACACTTCAGCCTATCGCCCGTTCATCAACACCCAACCCTTCAGCGTGAGA
CGACCAATGTACTCTCCCAGGTCTCGCCGTCTTCTCAACCACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCGGCAGCATTTCAAATA
TCCGCCGCTACAGCTCCATTCCACCCCAGAATGCCTAGCGCAGTCGGTCA
AGAAGCAGTGCGTGATGGCGTCGATCGACACTTTTCCGATGAATGAATTC
CCGCTCCCCGAGCACGTGGAGGCCGAGCTCTACCCACCGATTGCACCGCT
ATCCCAGACCTTCCTGCCGCTGCAAGAGATCCAAGCAGGTGTGATGGGTG
TGTCGGTGGGATTACTGCCTGGCAGATGCTCCAAGATCATGGGAAAGTAC
CTTCCGAGCATAGAGAAGCAGCGACGAGCGACGAAAGAGAACTTATCGGG
CTTAACGGCAGAGGAGAAGCTAGAGCGACGCAAGATGCGCGCACGCATGT
ACAACCGCCTGTCTCGTCAACGCTGCGACCAGCTGCGTAGTGACCTGTGT
GATGACGTGAACCGCATGGGCATCTACAAGAATATTGTCGACGATGCGCC
GGACATGATGTGTGTTATATCATCAGATATTCAGAGCCAGGTGCTCTACG
TCAATAAAGCTGCTCGATGTGTCCTCCCCACTGAGCCCACGCAGCTGGTG
GGGTCCAGCTTCTGGAACATCGTCCACAAAGATGACAAGATGGCGGTACT
CACGGCTCTCTCCGCCGTCACCACCCTCAAGTCGGCCAGGAAAGTAGAGA
AAGTACGCTGCCGTGTCGTCACCAAGCATCCCGCTGTCTATATGTCTGTG
CGGATGACGCTAGCGAATGGAATGCAGGGTATTGTCTGTGTAATGTGCCA
CGAAGATCCCCTGGCAGCCATTTTGTGCGTGTCGCCTGATGGACGGCCGT
CTATGACATAG
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Synonyms
Publications