NO21G02410, NO21G02410 (gene) Nannochloropsis oceanica

Overview
NameNO21G02410
Unique NameNO21G02410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3434
Alignment locationchr21:727458..730891 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:727458..730891 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G02410 vs. NCBI_GenBank
Match: EWM29478.1 (hypothetical protein Naga_100128g8 [Nannochloropsis gaditana])

HSP 1 Score: 295.4 bits (755), Expect = 2.200e-76
Identity = 160/317 (50.47%), Postives = 198/317 (62.46%), Query Frame = 0 
Query:    7 ILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATG---PTPMQFIPVAS----PAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRDGNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSCVSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNNGNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHPITIPKATNTIXXXXXXXXXXXXXXXXXXXL-RIPPPVELRNKAEEGKEGEWTRHALGLGNEVAADG 316
            ++F  + + ++ +AQR               Q    A+TP  G    T + F   AS      + T     GN  PE LYKQQRVEYTF +PV+LAPV+   +GW K FAA PCLQCYVTDAG Y EY ++A TQ+AFLSG+QFK LL  C S PGKVTQ+CW AAGL +V++E Y Y+ YAYHDKG   VFEGTYLVFNNG++  +I YGMAYFGL  GAPSEPGGLVV +GEG  PTRLKE+VQGL+ PI IPKAT+++                   + R    + +     E  EG WTR+AL +GNEVA +G
Sbjct:    9 VVFFLITLNTSTTAQR--------------LQHSLRAITPVQGYSSNTAVHFNRTASGNSYNTLATTLVVDGNIFPELLYKQQRVEYTFAIPVSLAPVELLTDGWVKDFAAFPCLQCYVTDAGFYAEYAEEANTQLAFLSGDQFKALLVHCASAPGKVTQACWDAAGLGDVEIEAYPYQTYAYHDKGTTPVFEGTYLVFNNGDNPVNIEYGMAYFGLNPGAPSEPGGLVVKEGEGLTPTRLKEIVQGLQRPILIPKATDSLDIPGQRKKEIRPVEERASSVERTSKSLRVAGSKAERVEGTWTRYALAMGNEVANNG 311
[Close]
BLAST of NO21G02410 vs. NCBI_GenBank
Match: XP_005855353.1 (hypothetical protein NGA_0119500, partial [Nannochloropsis gaditana CCMP526] >EKU21010.1 hypothetical protein NGA_0119500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 187.2 bits (474), Expect = 8.400e-44
Identity = 94/171 (54.97%), Postives = 114/171 (66.67%), Query Frame = 0 
Query:  146 LLTSCVSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNNGNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHPITIPKATNTIXXXXXXXXXXXXXXXXXXXL-RIPPPVELRNKAEEGKEGEWTRHALGLGNEVAADG 316
            LL  C S PGKVTQ+CW AAGL +V++E Y Y+ YAYHDKG   VFEGTYLVFNNG++  +I YGMAYFGL  GAPSEPGGLVV +GEG  PTRLKE+VQGL+ PI IPKAT+++                   + R    + +     E  EG WTR+AL +GNEVA +G
Sbjct:    3 LLVHCASAPGKVTQACWDAAGLGDVEIEAYPYQTYAYHDKGTTPVFEGTYLVFNNGDNPVNIEYGMAYFGLNPGAPSEPGGLVVKEGEGLTPTRLKEIVQGLQRPILIPKATDSLDIPGQRKKEIRPVEERASSVERTSKSLRVAGSKAERVEGTWTRYALAMGNEVANNG 173
The following BLAST results are available for this feature:
BLAST of NO21G02410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Position :
0
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50010001500200025003000SequenceEWM29478.1XP_005855353.1
Match NameE-valueIdentityDescription
EWM29478.12.200e-7650.47hypothetical protein Naga_100128g8 [Nannochloropsi... [more]
XP_005855353.18.400e-4454.97hypothetical protein NGA_0119500, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR031ncniR031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007717NSK007717Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02410.1NO21G02410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G02410.2NO21G02410.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|615468gene_12114Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100128g8gene1152Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02410.1NO21G02410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G02410.2NO21G02410.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02410 ID=NO21G02410|Name=NO21G02410|organism=Nannochloropsis oceanica|type=gene|length=3434bp
ATCTCGCGTTTGTGAATTCAAAAACGGCAGATATCGATACGCATACAAGA
TCATTGCTTGGGGTGTTATCATATTCAGTATAGCCAAGCTTCTTTATATC
AGATGTGTTATAATCTCGTATGCCCTTGGTCCAATTGCCTGCATTCATTC
AGCAGACACGGGGCAACAAGCTCGGCCTCCGAATCATCATCGGCCGATTA
TTTTCTTGTGCTCGGATGACCCGCCCAAGCATTATTTTCAGCACACAAAC
ACGCGCGTATACTGTATTCAAGTGCACAGGAAAGCCACATCATGACTGGC
TGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGC
GCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACAT
TCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATG
CAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAAGGCAGCAGG
AGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATA
CTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATGgt
gagcactatatgttgttggatgatagggaacaaatttgtggtggagcgta
tttaataatggcatcattctgggtcacaatttggggtcttaattacgact
gccccctcttctcgtcttgcctctcctgccttccctccctccctccctcc
ctcttcctcttttcagGCTGGACCAAGGCCTTCGCCGCCATTCCTTGCTT
GCAATGTTACGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAG
CCAAGACTCAGATCGCATTCCTATCCGGAGAGCAGTTCAAGgcatgtctc
tctttccctccatccctgttccctttcatttcttcctccccttgaagtac
ctcccagccacttcttctcctttccgtcattccctcctttctctaatcac
ttcttgctttcttaccctttcgaccttcaccacattcctgtcaacgttcc
cgcatcagggagtaattcacaaagatggcagacacagaccgacctatgaa
ggcgtccatgaagctggtagattcagttatcgggatatttaaatttatcg
agctgatgatccttcttgacatttagtctcactttccttccctcctttcc
ttcccaaagaccctcctcccctcctttatcatcaccctcgagcaagcccc
taatccccccctccctccctcccttcctccctccctcctccccctctccc
tccgcccgttagAGGCTCCTCACCTCATGCGTATCTACTCCGGGCAAAGT
CACTCAAAGCTGCTGGCAGGCCGCGGGGCTCGAGAATGTGAAGCTGGAGG
ATTATCAGTACGAGGTTTACGCCTACCACGATAAGgtcaagaaaggaggg
agggagggaggaagggaggaagggagggagggaggaagaaaatatcaaat
tactgattgcattttttgcatcgccattttcttggtgacagGGTGCGGAG
GCCGTTTTTGAGGGAACATACCTTGTCTTTAACAATGGCAACGACCGAGg
tacgtccctccctccctccttccctccctccttccctccctccctctaat
cttctcaccctttccccttcccttcctgcctacctgcctcccttcatcgc
agCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGCGC
CGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAGgtaagaaggga
cggagggagggacggagggcgggagggagggagtgagggtaaatggatag
ccggcaggatcgatgagagcggaagaagcatagaaggagggaggggctga
agaagagtagtcgcgagcacgtctctaaagacaagactccataccctccc
ctccctccctcccttcctccctccctccctccctccctccctatcccagG
CAAGATTCCCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCCA
TCACCATCCCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCACT
CAGCAGCAGCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCCC
TCCCGTGGAATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGGA
CGCGTCACGCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGgtaggtct
ctctttgtcctccctttctccttcccctcctccctccaactcctccgggt
cgattacaaatgttgagccagacctgaaaccttaaatatactcggactct
gactctcccttcctacctccctctctccctcctttctccttccctcagGC
TACAATTGGTGGTCAAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGT
TGCCTCCTTTTTGTCAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCC
CCGAAACGACGGCGGAAGgtgagggagggagggagggagggagggaaaga
gggaaagagggaaagagggaaagagaaagcagcaatagggaccctcgctt
ttttcgggcgattttaactccgagatgagggaagaagggagggagggagg
aaagagaattgcctaaccacgctttttattcctttcttgttctgtagGGC
TTTGGATTTTGACGTCGGAGTGCTGGAAGGAGgtagggattaccaaagcc
agacattgagaaagagagagacggaaggagggagggagggaaggcaggag
gggacaaaagcaagctagatatagacgtgacacaagtcctcccttcctcc
cctccctccttccctccttcctaccttccttctcctttctcagtcatcct
ccctccctccctccctccctccctcccttcctccctctctccctctctcc
cttcctcccttcctccaagATCGCCAACGAGTCAACGAAGCCTCAAGTTC
TAGAAAGTGGCGGGCGGATCGAACGTGCGTACGTGGATGGGGCGGGAGGG
AACGAAGGAGGATCATGTGTGGATGGATGGTGGATATTGATGAATGTATC
CCAGGAAGCAGACGCGAAGGTGACGCAGGCTGATGCAAATTTTGGGTTAC
GAACGCTGGATAAGAATCCGAGGGATGAGCATTAGACCTCTCCTTTTCTT
ACAGCTGTTTCTAGTGCACGGAGGGAGGGGAAAGGTTGCACAAAGGAGGG
GAAATGAAGGGAGGTAAAGATTAAGGTTAATGGACGTGGTATTGGACAAC
CGCCAATTCAATTACCTGTAGGGCAAACAAAGAAAACGAGCGAGAGAACG
CTGAGTACTGAGAAGTAAAAAATCAATCAAAGAGACAAGGGAAGACACAA
AGAAAACAAAAGAGACAATGACCCCGCATAAAGC
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protein sequence of NO21G02410.1

>NO21G02410.1-protein ID=NO21G02410.1-protein|Name=NO21G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MTGCRCILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATGP
TPMQFIPVASPAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRD
GNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSC
VSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNN
GNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHP
ITIPKATNTIAAAIPPTQQQQQQQRRPKALRIPPPVELRNKAEEGKEGEW
TRHALGLGNEVAADGYNWWSNAGAEYDGGSLVASFLSGEFYTKLRLLCPE
TTAEGLWILTSECWKEIANESTKPQVLESGGRIERAYVDGAGGNEGGSCV
DGWWILMNVSQEADAKVTQADANFGLRTLDKNPRDEH*
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protein sequence of NO21G02410.2

>NO21G02410.2-protein ID=NO21G02410.2-protein|Name=NO21G02410.2|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MTGCRCILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATGP
TPMQFIPVASPAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRD
GNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSC
VSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNN
GNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHP
ITIPKATNTIAAAIPPTQQQQQQQRRPKALRIPPPVELRNKAEEGKEGEW
TRHALGLGNEVAADGRSLFVLPFSFPSSLQLLRVDYKC*
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Synonyms
Publications