Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr21 genome chr21:727458..730891 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO21G02410.1 vs.
Match: EWM29478.1 (hypothetical protein Naga_100128g8 [Nannochloropsis gaditana])
HSP 1 Score: 465.3 bits (1196), Expect = 2.100e-127
Identity = 244/440 (55.45%), Postives = 298/440 (67.73%), Query Frame = 0
Query: 7 ILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATG---PTPMQFIPVASP----AVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRDGNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSCVSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNNGNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHPITIPKATNTIAAAIPPTQQQQQ----QQRRPKALRIPPPVELRNKAEEGKEGEWTRHALGLGNEVAADGYNWWSNAGAEYDGGSLVASFLSGEFYTKLRLLCPETTAEGLWILTSECWKEIANESTKPQVLESGGRIERAYVDGAGGNEGGSCVDGWWILMNVSQEADAKVTQADANFGLRTLDKNPRD 436
++F + + ++ +AQR Q A+TP G T + F AS + T GN PE LYKQQRVEYTF +PV+LAPV+ +GW K FAA PCLQCYVTDAG Y EY ++A TQ+AFLSG+QFK LL C S PGKVTQ+CW AAGL +V++E Y Y+ YAYHDKG VFEGTYLVFNNG++ +I YGMAYFGL GAPSEPGGLVV +GEG PTRLKE+VQGL+ PI IPKAT+++ P Q++++ ++R R + + E EG WTR+AL +GNEVA +GYNWWSNAGA Y+GG+LVASFLSG+ Y KLR CP+TT EGL I+TS+CWK+I+N ST P+ L SG RIER Y A N GGSCVDGWWI MN S+ A V +ADANFGLRTL NPRD
Sbjct: 9 VVFFLITLNTSTTAQR--------------LQHSLRAITPVQGYSSNTAVHFNRTASGNSYNTLATTLVVDGNIFPELLYKQQRVEYTFAIPVSLAPVELLTDGWVKDFAAFPCLQCYVTDAGFYAEYAEEANTQLAFLSGDQFKALLVHCASAPGKVTQACWDAAGLGDVEIEAYPYQTYAYHDKGTTPVFEGTYLVFNNGDNPVNIEYGMAYFGLNPGAPSEPGGLVVKEGEGLTPTRLKEIVQGLQRPILIPKATDSLDI---PGQRKKEIRPVEERASSVERTSKSLRVAGSKAERVEGTWTRYALAMGNEVANNGYNWWSNAGATYEGGNLVASFLSGDLYIKLRTACPQTTEEGLLIVTSDCWKQISNRSTIPKTLASGERIERDYDGRADPNGGGSCVDGWWIFMNESKSTGANVVKADANFGLRTLGNNPRD 431
The following BLAST results are available for this feature:
BLAST of NO21G02410.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 Expect = 2.10e-127 / Id = 55.45 Sequence EWM29478.1
Match Name E-value Identity Description
EWM29478.1 2.100e-127 55.45 hypothetical protein Naga_100128g8 [Nannochloropsi... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO21G02410.1 ID=NO21G02410.1|Name=NO21G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp ATCTCGCGTTTGTGAATTCAAAAACGGCAGATATCGATACGCATACAAGA TCATTGCTTGGGGTGTTATCATATTCAGTATAGCCAAGCTTCTTTATATC AGATGTGTTATAATCTCGTATGCCCTTGGTCCAATTGCCTGCATTCATTC AGCAGACACGGGGCAACAAGCTCGGCCTCCGAATCATCATCGGCCGATTA TTTTCTTGTGCTCGGATGACCCGCCCAAGCATTATTTTCAGCACACAAAC ACGCGCGTATACTGTATTCAAGTGCACAGGAAAGCCACATCATGACTGGC TGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGC GCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACAT TCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATG CAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAAGGCAGCAGG AGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATA CTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATGGC TGGACCAAGGCCTTCGCCGCCATTCCTTGCTTGCAATGTTACGTGACAGA CGCCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTCAGATCGCAT TCCTATCCGGAGAGCAGTTCAAGAGGCTCCTCACCTCATGCGTATCTACT CCGGGCAAAGTCACTCAAAGCTGCTGGCAGGCCGCGGGGCTCGAGAATGT GAAGCTGGAGGATTATCAGTACGAGGTTTACGCCTACCACGATAAGGGTG CGGAGGCCGTTTTTGAGGGAACATACCTTGTCTTTAACAATGGCAACGAC CGAGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGC GCCGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAGGCAAGATTC CCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCCATCACCATC CCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCACTCAGCAGCA GCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCCCTCCCGTGG AATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGGACGCGTCAC GCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGGCTACAATTGGTGGTC AAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGTTGCCTCCTTTTTGT CAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCCCCGAAACGACGGCG GAAGGGCTTTGGATTTTGACGTCGGAGTGCTGGAAGGAGATCGCCAACGA GTCAACGAAGCCTCAAGTTCTAGAAAGTGGCGGGCGGATCGAACGTGCGT ACGTGGATGGGGCGGGAGGGAACGAAGGAGGATCATGTGTGGATGGATGG TGGATATTGATGAATGTATCCCAGGAAGCAGACGCGAAGGTGACGCAGGC TGATGCAAATTTTGGGTTACGAACGCTGGATAAGAATCCGAGGGATGAGC ATTAGACCTCTCCTTTTCTTACAGCTGTTTCTAGTGCACGGAGGGAGGGG AAAGGTTGCACAAAGGAGGGGAAATGAAGGGAGGTAAAGATTAAGGTTAA TGGACGTGGTATTGGACAACCGCCAATTCAATTACCTGTAGGGCAAACAA AGAAAACGAGCGAGAGAACGCTGAGTACTGAGAAGTAAAAAATCAATCAA AGAGACAAGGGAAGACACAAAGAAAACAAAAGAGACAATGACCCCGCATA AAGC back to top protein sequence of NO21G02410.1
>NO21G02410.1-protein ID=NO21G02410.1-protein|Name=NO21G02410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp MTGCRCILFLFLAIASTASAQRQHLQQGSSLGSMPTFQIQSHAVTPATGP TPMQFIPVASPAVPTPKAAGGNTSPESLYKQQRVEYTFPVPVTLAPVQRD GNGWTKAFAAIPCLQCYVTDAGCYYEYTQQAKTQIAFLSGEQFKRLLTSC VSTPGKVTQSCWQAAGLENVKLEDYQYEVYAYHDKGAEAVFEGTYLVFNN GNDRADINYGMAYFGLKSGAPSEPGGLVVAKGEGKIPTRLKEVVQGLKHP ITIPKATNTIAAAIPPTQQQQQQQRRPKALRIPPPVELRNKAEEGKEGEW TRHALGLGNEVAADGYNWWSNAGAEYDGGSLVASFLSGEFYTKLRLLCPE TTAEGLWILTSECWKEIANESTKPQVLESGGRIERAYVDGAGGNEGGSCV DGWWILMNVSQEADAKVTQADANFGLRTLDKNPRDEH* back to top mRNA from alignment at chr21:727458..730891+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02410.1 ID=NO21G02410.1|Name=NO21G02410.1|organism=Nannochloropsis oceanica|type=mRNA|length=3434bp|location=Sequence derived from alignment at chr21:727458..730891+ (Nannochloropsis oceanica) ATCTCGCGTTTGTGAATTCAAAAACGGCAGATATCGATACGCATACAAGA
TCATTGCTTGGGGTGTTATCATATTCAGTATAGCCAAGCTTCTTTATATC
AGATGTGTTATAATCTCGTATGCCCTTGGTCCAATTGCCTGCATTCATTC
AGCAGACACGGGGCAACAAGCTCGGCCTCCGAATCATCATCGGCCGATTA
TTTTCTTGTGCTCGGATGACCCGCCCAAGCATTATTTTCAGCACACAAAC
ACGCGCGTATACTGTATTCAAGTGCACAGGAAAGCCACATCATGACTGGC
TGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCACGGCTTCAGC
GCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCATGCCCACAT
TCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCGACCCCAATG
CAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAAGGCAGCAGG
AGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCGTGGAGTATA
CTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGATGGGAATG GT
GAGCACTATATGTTGTTGGATGATAGGGAACAAATTTGTGGTGGAGCGTA
TTTAATAATGGCATCATTCTGGGTCACAATTTGGGGTCTTAATTACGACT
GCCCCCTCTTCTCGTCTTGCCTCTCCTGCCTTCCCTCCCTCCCTCCCTCC
CTCTTCCTCTTTTCAGGCTGGACCAAGGCCTTCGCCGCCATTCCTTGCTT
GCAATGTTACGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAG
CCAAGACTCAGATCGCATTCCTATCCGGAGAGCAGTTCAAG GCATGTCTC
TCTTTCCCTCCATCCCTGTTCCCTTTCATTTCTTCCTCCCCTTGAAGTAC
CTCCCAGCCACTTCTTCTCCTTTCCGTCATTCCCTCCTTTCTCTAATCAC
TTCTTGCTTTCTTACCCTTTCGACCTTCACCACATTCCTGTCAACGTTCC
CGCATCAGGGAGTAATTCACAAAGATGGCAGACACAGACCGACCTATGAA
GGCGTCCATGAAGCTGGTAGATTCAGTTATCGGGATATTTAAATTTATCG
AGCTGATGATCCTTCTTGACATTTAGTCTCACTTTCCTTCCCTCCTTTCC
TTCCCAAAGACCCTCCTCCCCTCCTTTATCATCACCCTCGAGCAAGCCCC
TAATCCCCCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTCCCCCTCTCCC
TCCGCCCGTTAGAGGCTCCTCACCTCATGCGTATCTACTCCGGGCAAAGT
CACTCAAAGCTGCTGGCAGGCCGCGGGGCTCGAGAATGTGAAGCTGGAGG
ATTATCAGTACGAGGTTTACGCCTACCACGATAAG GTCAAGAAAGGAGGG
AGGGAGGGAGGAAGGGAGGAAGGGAGGGAGGGAGGAAGAAAATATCAAAT
TACTGATTGCATTTTTTGCATCGCCATTTTCTTGGTGACAGGGTGCGGAG
GCCGTTTTTGAGGGAACATACCTTGTCTTTAACAATGGCAACGACCGAG G
TACGTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCTAAT
CTTCTCACCCTTTCCCCTTCCCTTCCTGCCTACCTGCCTCCCTTCATCGC
AGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAAATCCGGGGCGC
CGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAG GTAAGAAGGGA
CGGAGGGAGGGACGGAGGGCGGGAGGGAGGGAGTGAGGGTAAATGGATAG
CCGGCAGGATCGATGAGAGCGGAAGAAGCATAGAAGGAGGGAGGGGCTGA
AGAAGAGTAGTCGCGAGCACGTCTCTAAAGACAAGACTCCATACCCTCCC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTATCCCAGG
CAAGATTCCCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCCA
TCACCATCCCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCACT
CAGCAGCAGCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCCC
TCCCGTGGAATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGGA
CGCGTCACGCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACG GTAGGTCT
CTCTTTGTCCTCCCTTTCTCCTTCCCCTCCTCCCTCCAACTCCTCCGGGT
CGATTACAAATGTTGAGCCAGACCTGAAACCTTAAATATACTCGGACTCT
GACTCTCCCTTCCTACCTCCCTCTCTCCCTCCTTTCTCCTTCCCTCAGGC
TACAATTGGTGGTCAAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGT
TGCCTCCTTTTTGTCAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCC
CCGAAACGACGGCGGAAG GTGAGGGAGGGAGGGAGGGAGGGAGGGAAAGA
GGGAAAGAGGGAAAGAGGGAAAGAGAAAGCAGCAATAGGGACCCTCGCTT
TTTTCGGGCGATTTTAACTCCGAGATGAGGGAAGAAGGGAGGGAGGGAGG
AAAGAGAATTGCCTAACCACGCTTTTTATTCCTTTCTTGTTCTGTAGGGC
TTTGGATTTTGACGTCGGAGTGCTGGAAGGAG GTAGGGATTACCAAAGCC
AGACATTGAGAAAGAGAGAGACGGAAGGAGGGAGGGAGGGAAGGCAGGAG
GGGACAAAAGCAAGCTAGATATAGACGTGACACAAGTCCTCCCTTCCTCC
CCTCCCTCCTTCCCTCCTTCCTACCTTCCTTCTCCTTTCTCAGTCATCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCTCTCCCTCTCTCC
CTTCCTCCCTTCCTCCAAGATCGCCAACGAGTCAACGAAGCCTCAAGTTC
TAGAAAGTGGCGGGCGGATCGAACGTGCGTACGTGGATGGGGCGGGAGGG
AACGAAGGAGGATCATGTGTGGATGGATGGTGGATATTGATGAATGTATC
CCAGGAAGCAGACGCGAAGGTGACGCAGGCTGATGCAAATTTTGGGTTAC
GAACGCTGGATAAGAATCCGAGGGATGAGCATTAG ACCTCTCCTTTTCTT
ACAGCTGTTTCTAGTGCACGGAGGGAGGGGAAAGGTTGCACAAAGGAGGG
GAAATGAAGGGAGGTAAAGATTAAGGTTAATGGACGTGGTATTGGACAAC
CGCCAATTCAATTACCTGTAGGGCAAACAAAGAAAACGAGCGAGAGAACG
CTGAGTACTGAGAAGTAAAAAATCAATCAAAGAGACAAGGGAAGACACAA
AGAAAACAAAAGAGACAATGACCCCGCATAAAGC back to top Coding sequence (CDS) from alignment at chr21:727458..730891+
>NO21G02410.1 ID=NO21G02410.1|Name=NO21G02410.1|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at chr21:727458..730891+ (Nannochloropsis oceanica) ATGACTGGCTGTCGCTGTATCTTGTTCCTTTTTCTGGCCATCGCTAGCAC GGCTTCAGCGCAGCGACAGCACCTGCAGCAAGGCTCCTCCCTCGGATCCA TGCCCACATTCCAAATTCAAAGCCACGCCGTCACACCCGCCACTGGTCCG ACCCCAATGCAATTTATACCGGTTGCATCACCCGCAGTGCCGACGCCTAA GGCAGCAGGAGGGAACACATCTCCTGAATCGCTCTACAAGCAGCAACGCG TGGAGTATACTTTCCCGGTGCCAGTCACACTAGCTCCAGTCCAACGGGAT GGGAATGGCTGGACCAAGGCCTTCGCCGCCATTCCTTGCTTGCAATGTTA CGTGACAGACGCCGGCTGTTATTATGAGTACACACAACAAGCCAAGACTC AGATCGCATTCCTATCCGGAGAGCAGTTCAAGAGGCTCCTCACCTCATGC GTATCTACTCCGGGCAAAGTCACTCAAAGCTGCTGGCAGGCCGCGGGGCT CGAGAATGTGAAGCTGGAGGATTATCAGTACGAGGTTTACGCCTACCACG ATAAGGGTGCGGAGGCCGTTTTTGAGGGAACATACCTTGTCTTTAACAAT GGCAACGACCGAGCTGACATTAACTATGGCATGGCCTACTTTGGCCTCAA ATCCGGGGCGCCGTCTGAGCCAGGGGGACTGGTCGTTGCGAAAGGAGAAG GCAAGATTCCCACCCGGCTAAAGGAGGTCGTCCAAGGGCTTAAGCATCCC ATCACCATCCCCAAAGCCACAAATACCATCGCTGCCGCCATTCCTCCCAC TCAGCAGCAGCAACAACAGCAGCGGCGACCAAAAGCCCTGCGTATTCCCC CTCCCGTGGAATTAAGGAACAAGGCGGAGGAAGGGAAGGAAGGAGAATGG ACGCGTCACGCCCTTGGCCTGGGTAACGAGGTAGCGGCCGACGGCTACAA TTGGTGGTCAAACGCAGGTGCGGAGTACGACGGAGGGTCTCTGGTTGCCT CCTTTTTGTCAGGAGAATTTTACACCAAACTCAGGCTCCTGTGCCCCGAA ACGACGGCGGAAGGGCTTTGGATTTTGACGTCGGAGTGCTGGAAGGAGAT CGCCAACGAGTCAACGAAGCCTCAAGTTCTAGAAAGTGGCGGGCGGATCG AACGTGCGTACGTGGATGGGGCGGGAGGGAACGAAGGAGGATCATGTGTG GATGGATGGTGGATATTGATGAATGTATCCCAGGAAGCAGACGCGAAGGT GACGCAGGCTGATGCAAATTTTGGGTTACGAACGCTGGATAAGAATCCGA GGGATGAGCATTAG back to top