NO21G02340, NO21G02340 (gene) Nannochloropsis oceanica

Overview
NameNO21G02340
Unique NameNO21G02340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1411
Alignment locationchr21:702433..703843 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:702433..703843 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO21G02340 vs. NCBI_GenBank
Match: XP_005855351.1 (hypothetical protein NGA_0119300 [Nannochloropsis gaditana CCMP526] >EKU21008.1 hypothetical protein NGA_0119300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 226.9 bits (577), Expect = 6.900e-56
Identity = 133/224 (59.38%), Postives = 159/224 (70.98%), Query Frame = 0 
Query:    1 MPDNENNRDMPPAKSEGLGLEKLET--EAASSSFPSSSSYDTTAAALSILKRCEARYKQEVLHVGRNLRTFFETHLXXXXXXXXXXXXXXXXXXXXXXNLGSLYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSMLAATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLKECVQDGGCRRLLAGGKVEGGRG 223
            M +  ++RDMP ++S+GLGLEKL++  E ++S F SS       AA++ LKRCE RYK E+  +GRNLRTFFET L                       L S+YSDYNLTIFSHSLIGGAFGYVLAR+VTTRL PS RLFA+VSFTGLSSMLAA+AAT+LAT+DLVKKA +VV  +   KEG  +  +WPYL+ CRPV QLKECV DG CR LL GGKV+GG G
Sbjct:    1 MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQL------------DPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQK--SWPYLLTCRPVLQLKECV-DGPCRDLLLGGKVQGGVG 209
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BLAST of NO21G02340 vs. NCBI_GenBank
Match: EWM29474.1 (hypothetical protein Naga_100128g4 [Nannochloropsis gaditana])

HSP 1 Score: 226.9 bits (577), Expect = 6.900e-56
Identity = 133/224 (59.38%), Postives = 159/224 (70.98%), Query Frame = 0 
Query:    1 MPDNENNRDMPPAKSEGLGLEKLET--EAASSSFPSSSSYDTTAAALSILKRCEARYKQEVLHVGRNLRTFFETHLXXXXXXXXXXXXXXXXXXXXXXNLGSLYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSMLAATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLKECVQDGGCRRLLAGGKVEGGRG 223
            M +  ++RDMP ++S+GLGLEKL++  E ++S F SS       AA++ LKRCE RYK E+  +GRNLRTFFET L                       L S+YSDYNLTIFSHSLIGGAFGYVLAR+VTTRL PS RLFA+VSFTGLSSMLAA+AAT+LAT+DLVKKA +VV  +   KEG  +  +WPYL+ CRPV QLKECV DG CR LL GGKV+GG G
Sbjct:   65 MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQL------------DPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQK--SWPYLLTCRPVLQLKECV-DGPCRDLLLGGKVQGGVG 273
[Close]
BLAST of NO21G02340 vs. NCBI_GenBank
Match: EWM20202.1 (hypothetical protein Naga_100973g3 [Nannochloropsis gaditana])

HSP 1 Score: 156.8 bits (395), Expect = 8.800e-35
Identity = 84/123 (68.29%), Postives = 98/123 (79.67%), Query Frame = 0 
Query:  100 SLYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSMLAATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLKECVQDGGCRRLLAGGKVEGGRG 223
            ++YSDYNLTIFSHSLIGGAFGYVLAR+VTTRL  SPRL A VSFTGLSS+LAA+AAT+LAT+DLVKKA + VV +   K+   ++   PYL+ CRP+ QLKEC  DG CR LL GGKV GG G
Sbjct:   37 NMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGISPRLVAFVSFTGLSSVLAASAATSLATADLVKKAMETVVADGSKKQATQKSS--PYLLTCRPLPQLKECGDDGPCRDLLLGGKVRGGIG 157
The following BLAST results are available for this feature:
BLAST of NO21G02340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005855351.16.900e-5659.38hypothetical protein NGA_0119300 [Nannochloropsis ... [more]
EWM29474.16.900e-5659.38hypothetical protein Naga_100128g4 [Nannochloropsi... [more]
EWM20202.18.800e-3568.29hypothetical protein Naga_100973g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL031nonsL031Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR090ncniR090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR092ngnoR092Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007707NSK007707Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02340.1NO21G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647370gene_11733Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100128g4gene1148Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02340.1NO21G02340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02340 ID=NO21G02340|Name=NO21G02340|organism=Nannochloropsis oceanica|type=gene|length=1411bp
CTTTTTTTTTACGCTCCCTCAGTCCCTCGCATTGGCGATATGCAGCCGTG
GTAATGATGCATGTCCTCCACCTTGTCTTGCTTTTAGTGCTCTCTCTCTC
TCACACTTGCGTCCACGCCTCATGCACTCATGCTCCCTTTGTCATTCATT
TAGTTCTCAAAGCAAGACCTCAGGCGACCGCGGCCCGGCGCAAGAGGAGG
GAGGCGTCGTCACTCTTCAAGTTGTTCCTTGAGCAGTCTTGGACCTCGCC
CTCAAGCAGCAGGACACAGAACCTCACTTTCGAGCACGCACGTCCCGAAG
CGGCCACAGCATCCCCCGGATCCAATCCCACCGGCAGCCAACCAGCTGGA
AACTAGTCCAAACGAgtaagccattgccatcctcgtctcaaatcctctcc
ccaataagcttgaaagctcacggaagaagccgacatcaactccctctttc
cctcccctatccttgcttgattcacagACCAAAGAAAATATAGTCATGCC
CGACAATGAAAACAATCGGGACATGCCTCCCGCCAAGAGCGAAGGCCTGG
GCCTCGAGAAACTGGAGACCGAAGCTGCATCTTCCTCCTTCCCTTCCTCC
TCCTCTTACGACACCACCGCTGCAGCTCTCAGCATTCTCAAGCGCTGTGA
AGCCCGGTACAAACAAGAGGTCTTGCACGTCGGGCGCAACCTCCGCACCT
TTTTTGAGACCCACCTCGACACCTTTTCCTCCACCTCCTCCTCCTCCTCA
CAAGCAGGCTCCACCGCCACTGCCACGGACACAAACCTCGGTAGTCTCTA
CAGTGATTACAACTTGACCATTTTCTCTCACTCCCTCATCGGCGGTGCTT
TCGGTTACGTGCTCGCCCGAGCGGTTACCACTCGTTTGGCACCGTCCCCG
CGTCTTTTTGCCCTGGTCAGCTTTACGGGCTTGTCCTCCATGCTTGCAGC
TACTGCAGCCACGACGCTCGCCACCTCGGACCTGGTGAAGAAAGCTACAC
AGGTTGTAGTGGAGGAGAAGGGCGGGAAGGAAGGAGGGATGGAGGCACCG
GCGTGGCCCTATTTGATCGTGTGCCGTCCGGTCACGCAGTTGAAAGAGTG
TGTGCAGGACGGAGGGTGCCGTCGGTTACTGGCAGGGGGGAAGGTGGAGG
GGGGGAGGGGCTGCTGCTGGCCTACAAGAGGTGTAGGGCGAGAGCGGAGG
TGTGGGCGACGCAGGATGAGTTCCTAGCCATGCAGGAGGAGGAGGTCGGG
GGGAAGGGAGGGAGGGAGGAGGAGGACGAGGACGAGGAAGGGAGGTTTAT
GGGGGAGGGGGATGAAAGGTTTTGGGGAGAGGGAGGGATGGAAGGGACAA
GAGGGGAAAATGAGAGCAGAAGCAACACCAATGCCGGAAGGAAATGGCAG
TGAGGGAGGGA
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protein sequence of NO21G02340.1

>NO21G02340.1-protein ID=NO21G02340.1-protein|Name=NO21G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPDNENNRDMPPAKSEGLGLEKLETEAASSSFPSSSSYDTTAAALSILKR
CEARYKQEVLHVGRNLRTFFETHLDTFSSTSSSSSQAGSTATATDTNLGS
LYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSML
AATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLK
ECVQDGGCRRLLAGGKVEGGRGCCWPTRGVGRERRCGRRRMSS*
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Synonyms
Publications