NO21G02340.1, NO21G02340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02340.1
Unique NameNO21G02340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1299
Alignment locationchr21:702433..703843 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:702433..703843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02340.1 vs.
Match: EWM29474.1 (hypothetical protein Naga_100128g4 [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 1.900e-58
Identity = 138/224 (61.61%), Postives = 165/224 (73.66%), Query Frame = 0 
Query:    1 MPDNENNRDMPPAKSEGLGLEKLET--EAASSSFPSSSSYDTTAAALSILKRCEARYKQEVLHVGRNLRTFFETHLDTFSSTSSSSSQAGSTATATDTNLGSLYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSMLAATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLKECVQDGGCRRLLAGGKVEGGRG 223
            M +  ++RDMP ++S+GLGLEKL++  E ++S F SS       AA++ LKRCE RYK E+  +GRNLRTFFET LD  S +S            TD  L S+YSDYNLTIFSHSLIGGAFGYVLAR+VTTRL PS RLFA+VSFTGLSSMLAA+AAT+LAT+DLVKKA +VV  +   KEG  +  +WPYL+ CRPV QLKECV DG CR LL GGKV+GG G
Sbjct:   65 MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSS------------TDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQK--SWPYLLTCRPVLQLKECV-DGPCRDLLLGGKVQGGVG 273
The following BLAST results are available for this feature:
BLAST of NO21G02340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29474.11.900e-5861.61hypothetical protein Naga_100128g4 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02340NO21G02340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02340.1NO21G02340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02340.1.cds1NO21G02340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02340.1 ID=NO21G02340.1|Name=NO21G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
CTTTTTTTTTACGCTCCCTCAGTCCCTCGCATTGGCGATATGCAGCCGTG
GTAATGATGCATGTCCTCCACCTTGTCTTGCTTTTAGTGCTCTCTCTCTC
TCACACTTGCGTCCACGCCTCATGCACTCATGCTCCCTTTGTCATTCATT
TAGTTCTCAAAGCAAGACCTCAGGCGACCGCGGCCCGGCGCAAGAGGAGG
GAGGCGTCGTCACTCTTCAAGTTGTTCCTTGAGCAGTCTTGGACCTCGCC
CTCAAGCAGCAGGACACAGAACCTCACTTTCGAGCACGCACGTCCCGAAG
CGGCCACAGCATCCCCCGGATCCAATCCCACCGGCAGCCAACCAGCTGGA
AACTAGTCCAAACGAACCAAAGAAAATATAGTCATGCCCGACAATGAAAA
CAATCGGGACATGCCTCCCGCCAAGAGCGAAGGCCTGGGCCTCGAGAAAC
TGGAGACCGAAGCTGCATCTTCCTCCTTCCCTTCCTCCTCCTCTTACGAC
ACCACCGCTGCAGCTCTCAGCATTCTCAAGCGCTGTGAAGCCCGGTACAA
ACAAGAGGTCTTGCACGTCGGGCGCAACCTCCGCACCTTTTTTGAGACCC
ACCTCGACACCTTTTCCTCCACCTCCTCCTCCTCCTCACAAGCAGGCTCC
ACCGCCACTGCCACGGACACAAACCTCGGTAGTCTCTACAGTGATTACAA
CTTGACCATTTTCTCTCACTCCCTCATCGGCGGTGCTTTCGGTTACGTGC
TCGCCCGAGCGGTTACCACTCGTTTGGCACCGTCCCCGCGTCTTTTTGCC
CTGGTCAGCTTTACGGGCTTGTCCTCCATGCTTGCAGCTACTGCAGCCAC
GACGCTCGCCACCTCGGACCTGGTGAAGAAAGCTACACAGGTTGTAGTGG
AGGAGAAGGGCGGGAAGGAAGGAGGGATGGAGGCACCGGCGTGGCCCTAT
TTGATCGTGTGCCGTCCGGTCACGCAGTTGAAAGAGTGTGTGCAGGACGG
AGGGTGCCGTCGGTTACTGGCAGGGGGGAAGGTGGAGGGGGGGAGGGGCT
GCTGCTGGCCTACAAGAGGTGTAGGGCGAGAGCGGAGGTGTGGGCGACGC
AGGATGAGTTCCTAGCCATGCAGGAGGAGGAGGTCGGGGGGAAGGGAGGG
AGGGAGGAGGAGGACGAGGACGAGGAAGGGAGGTTTATGGGGGAGGGGGA
TGAAAGGTTTTGGGGAGAGGGAGGGATGGAAGGGACAAGAGGGGAAAATG
AGAGCAGAAGCAACACCAATGCCGGAAGGAAATGGCAGTGAGGGAGGGA
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protein sequence of NO21G02340.1

>NO21G02340.1-protein ID=NO21G02340.1-protein|Name=NO21G02340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MPDNENNRDMPPAKSEGLGLEKLETEAASSSFPSSSSYDTTAAALSILKR
CEARYKQEVLHVGRNLRTFFETHLDTFSSTSSSSSQAGSTATATDTNLGS
LYSDYNLTIFSHSLIGGAFGYVLARAVTTRLAPSPRLFALVSFTGLSSML
AATAATTLATSDLVKKATQVVVEEKGGKEGGMEAPAWPYLIVCRPVTQLK
ECVQDGGCRRLLAGGKVEGGRGCCWPTRGVGRERRCGRRRMSS*
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mRNA from alignment at chr21:702433..703843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02340.1 ID=NO21G02340.1|Name=NO21G02340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at chr21:702433..703843- (Nannochloropsis oceanica)
CTTTTTTTTTACGCTCCCTCAGTCCCTCGCATTGGCGATATGCAGCCGTG
GTAATGATGCATGTCCTCCACCTTGTCTTGCTTTTAGTGCTCTCTCTCTC
TCACACTTGCGTCCACGCCTCATGCACTCATGCTCCCTTTGTCATTCATT
TAGTTCTCAAAGCAAGACCTCAGGCGACCGCGGCCCGGCGCAAGAGGAGG
GAGGCGTCGTCACTCTTCAAGTTGTTCCTTGAGCAGTCTTGGACCTCGCC
CTCAAGCAGCAGGACACAGAACCTCACTTTCGAGCACGCACGTCCCGAAG
CGGCCACAGCATCCCCCGGATCCAATCCCACCGGCAGCCAACCAGCTGGA
AACTAGTCCAAACGAGTAAGCCATTGCCATCCTCGTCTCAAATCCTCTCC
CCAATAAGCTTGAAAGCTCACGGAAGAAGCCGACATCAACTCCCTCTTTC
CCTCCCCTATCCTTGCTTGATTCACAGACCAAAGAAAATATAGTCATGCC
CGACAATGAAAACAATCGGGACATGCCTCCCGCCAAGAGCGAAGGCCTGG
GCCTCGAGAAACTGGAGACCGAAGCTGCATCTTCCTCCTTCCCTTCCTCC
TCCTCTTACGACACCACCGCTGCAGCTCTCAGCATTCTCAAGCGCTGTGA
AGCCCGGTACAAACAAGAGGTCTTGCACGTCGGGCGCAACCTCCGCACCT
TTTTTGAGACCCACCTCGACACCTTTTCCTCCACCTCCTCCTCCTCCTCA
CAAGCAGGCTCCACCGCCACTGCCACGGACACAAACCTCGGTAGTCTCTA
CAGTGATTACAACTTGACCATTTTCTCTCACTCCCTCATCGGCGGTGCTT
TCGGTTACGTGCTCGCCCGAGCGGTTACCACTCGTTTGGCACCGTCCCCG
CGTCTTTTTGCCCTGGTCAGCTTTACGGGCTTGTCCTCCATGCTTGCAGC
TACTGCAGCCACGACGCTCGCCACCTCGGACCTGGTGAAGAAAGCTACAC
AGGTTGTAGTGGAGGAGAAGGGCGGGAAGGAAGGAGGGATGGAGGCACCG
GCGTGGCCCTATTTGATCGTGTGCCGTCCGGTCACGCAGTTGAAAGAGTG
TGTGCAGGACGGAGGGTGCCGTCGGTTACTGGCAGGGGGGAAGGTGGAGG
GGGGGAGGGGCTGCTGCTGGCCTACAAGAGGTGTAGGGCGAGAGCGGAGG
TGTGGGCGACGCAGGATGAGTTCCTAGCCATGCAGGAGGAGGAGGTCGGG
GGGAAGGGAGGGAGGGAGGAGGAGGACGAGGACGAGGAAGGGAGGTTTAT
GGGGGAGGGGGATGAAAGGTTTTGGGGAGAGGGAGGGATGGAAGGGACAA
GAGGGGAAAATGAGAGCAGAAGCAACACCAATGCCGGAAGGAAATGGCAG
TGAGGGAGGGA
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Coding sequence (CDS) from alignment at chr21:702433..703843-

>NO21G02340.1 ID=NO21G02340.1|Name=NO21G02340.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr21:702433..703843- (Nannochloropsis oceanica)
ATGCCCGACAATGAAAACAATCGGGACATGCCTCCCGCCAAGAGCGAAGG
CCTGGGCCTCGAGAAACTGGAGACCGAAGCTGCATCTTCCTCCTTCCCTT
CCTCCTCCTCTTACGACACCACCGCTGCAGCTCTCAGCATTCTCAAGCGC
TGTGAAGCCCGGTACAAACAAGAGGTCTTGCACGTCGGGCGCAACCTCCG
CACCTTTTTTGAGACCCACCTCGACACCTTTTCCTCCACCTCCTCCTCCT
CCTCACAAGCAGGCTCCACCGCCACTGCCACGGACACAAACCTCGGTAGT
CTCTACAGTGATTACAACTTGACCATTTTCTCTCACTCCCTCATCGGCGG
TGCTTTCGGTTACGTGCTCGCCCGAGCGGTTACCACTCGTTTGGCACCGT
CCCCGCGTCTTTTTGCCCTGGTCAGCTTTACGGGCTTGTCCTCCATGCTT
GCAGCTACTGCAGCCACGACGCTCGCCACCTCGGACCTGGTGAAGAAAGC
TACACAGGTTGTAGTGGAGGAGAAGGGCGGGAAGGAAGGAGGGATGGAGG
CACCGGCGTGGCCCTATTTGATCGTGTGCCGTCCGGTCACGCAGTTGAAA
GAGTGTGTGCAGGACGGAGGGTGCCGTCGGTTACTGGCAGGGGGGAAGGT
GGAGGGGGGGAGGGGCTGCTGCTGGCCTACAAGAGGTGTAGGGCGAGAGC
GGAGGTGTGGGCGACGCAGGATGAGTTCCTAG
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Synonyms
Publications