NO21G02280, NO21G02280 (gene) Nannochloropsis oceanica

Overview
NameNO21G02280
Unique NameNO21G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1174
Alignment locationchr21:689133..690306 -

Link to JBrowse

Properties
Property NameValue
DescriptionMitogen-activated protein kinase kinase 1 interacting
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:689133..690306 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0032006regulation of TOR signaling
GO:0032006regulation of TOR signaling
GO:0016310phosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR015019LAMTOR3
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
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BLAST of NO21G02280 vs. NCBI_GenBank
Match: EWM22740.1 (Mitogen-activated protein kinase kinase 1 interacting [Nannochloropsis gaditana])

HSP 1 Score: 196.8 bits (499), Expect = 6.100e-47
Identity = 118/206 (57.28%), Postives = 141/206 (68.45%), Query Frame = 0 
Query:    1 MRQELTTVDPVVQQSFDQLLIRHPDVEIILLSTAEGIPLMHAVRPSFSSFP---PASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLSPLVLSFVGYAATATAMEL---------GQENDLASCTPSLTGGXXXXXXXXXXXXXLGSVFPLQLMNVGMILDSQHVYAEALAPLRAAVEASEREA-AKGRIL 194
            MR+ELT+VDPVVQQ+FDQLL+RHPDVE ILLSTA+GIPLM AVRP+   FP    +SS+S +E++++A+FSIA DQARKLG+G+C SIVSLYQGLTLV +NL+PLVLSFVGYA   +A  +         GQE          +               L    PLQLMNVGMILDSQ  + EALAPLR  VEASERE+   GR L
Sbjct:    1 MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPLGGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASERESTTSGRSL 206
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BLAST of NO21G02280 vs. NCBI_GenBank
Match: CCA26418.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 64.3 bits (155), Expect = 4.700e-7
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:   22 RHPDVEIILLSTAEGIPLMHAVRPSFSSFPPASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLSPLVLSFVGYAATATAM 117
            R  D++ IL+ T EG+PL+H V P  SS     S    ET +  I + AADQ  KL  G+ K++ + Y+   L+HVN  PLV++ +   +  +A+
Sbjct:   12 RFDDIQAILICTWEGVPLVHVVEPERSS----GSYEAAETLLPTILARAADQVGKLRFGAVKNVTAYYKNTVLIHVNDMPLVITIIAIRSPQSAV 102
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BLAST of NO21G02280 vs. NCBI_GenBank
Match: XP_013755860.1 (mitogen-activated protein kinase scaffold protein 1 [Thecamonas trahens ATCC 50062] >KNC51731.1 mitogen-activated protein kinase scaffold protein 1 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 63.9 bits (154), Expect = 6.200e-7
Identity = 37/102 (36.27%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   16 FDQLLIRHPDVEIILLSTAEGIPLMHAVRP---------SFSSFPPASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLSPLVLSFVG 109
            F++LL R   +E ILL+ ++G  L+   RP         +  +   A   +VLE  ++ +F +A DQA KLG G+  S++S Y+   +V +N++PLVLSF+G
Sbjct:    8 FEELLTRVHGLESILLTDSQGAVLLQVTRPVAEDKVEGAADGAEADAGEATVLEPAMSGVFVMACDQAAKLGIGATSSMISYYENNVIVQLNVAPLVLSFIG 109
The following BLAST results are available for this feature:
BLAST of NO21G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22740.16.100e-4757.28Mitogen-activated protein kinase kinase 1 interact... [more]
CCA26418.14.700e-736.84conserved hypothetical protein [Albugo laibachii N... [more]
XP_013755860.16.200e-736.27mitogen-activated protein kinase scaffold protein ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL027nonsL027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR090ncniR090Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006261NSK006261Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02280.1NO21G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|42726gene_11728Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100209g7gene7711Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02280.1NO21G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02280 ID=NO21G02280|Name=NO21G02280|organism=Nannochloropsis oceanica|type=gene|length=1174bp
AGTACAGGCGCTATCATTTCCACCAAAAGCAGCATCATCATCAGCAGCAT
TTGTAGCCGGGGGTCACCATGCGGCAAGAGCTCACGACCGTGgtaagaga
ggaggagactcttctccctcctccctccctccctccctccttccctactt
gctctcctaccatcgtcgcaaatccgttgcttatgcggctgtctcgttac
aacccgctcaccaagattttaacaagctcctggctctttcttctgcacac
tttccccctgtgttccctcctgttttggccctcggtcatccactgatgtc
ccgccttccctccgttcgtactcttcctatgcgtagGACCCCGTCGTCCA
ACAATCTTTTGACCAGCTCCTCATCCGGCATCCAGACGTGGAAATTATTC
TTCTCAGCACCGCAGAGGGCATCCCATTGATGCACGgtacgtctataaac
aaatcctcccctccctccttccctccctcccacaatcctcccccccccac
acgtttcctatctcacttttcgaaactccccttcctctgaagattcaccc
tagttcctctcccaacattctaaataattcaacacaagcagCCGTCCGTC
CCTCTTTTTCCTCTTTCCCTCCCGCCTCCTCCATATCCGTCCTCGAGACC
CGAATCACTGCCATCTTCAGTATTGCCGCCGACCAAGCTCGAAAACTGGG
CCATGGCTCCTGTAAATCCATCGTCTCTCTATATCAGGGCTTGACGCTTG
TGCACGTCAATCTGTCTCCACTTGTTCTTTCTTTTGTGGGATACGCCGCG
ACTGCAACTGCCATGGAGCTTGGGCAAGAGAACGATTTGGCCTCGTGCAC
ACCATCCTTGACAGGAGGGGGAGCGGAGGGGGGGCTGGAGGGAGGGAGGG
AAGGAGTGTTGGGGTCGGTTTTTCCATTGCAATTGATGAATGTGGGCATG
ATATTGGATTCGCAGCATGTATATGCAGAGGCGCTGGCGCCATTGAGAGC
AGCAGTTGAAGCGTCGGAAAGGGAGGCAGCCAAAGGAAGGATACTGTAAG
GGGAGCTGCAAGGTTGAGGAGGAAGAAAGGGCGATCGAATAGCCATGAGT
AGGTAAATGTGAAAATGATATCACAAATTTAAAGAAAAAGAAAAGAGAAA
TACAAGGAAGCCCGGAAGCCAGCC
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protein sequence of NO21G02280.1

>NO21G02280.1-protein ID=NO21G02280.1-protein|Name=NO21G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MRQELTTVDPVVQQSFDQLLIRHPDVEIILLSTAEGIPLMHAVRPSFSSF
PPASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLS
PLVLSFVGYAATATAMELGQENDLASCTPSLTGGGAEGGLEGGREGVLGS
VFPLQLMNVGMILDSQHVYAEALAPLRAAVEASEREAAKGRIL*
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Synonyms
Publications