NO21G02280.1, NO21G02280.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02280.1
Unique NameNO21G02280.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length775
Alignment locationchr21:689133..690306 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:689133..690306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G02280.1 vs.
Match: EWM22740.1 (Mitogen-activated protein kinase kinase 1 interacting [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 2.000e-50
Identity = 124/206 (60.19%), Postives = 147/206 (71.36%), Query Frame = 0 
Query:    1 MRQELTTVDPVVQQSFDQLLIRHPDVEIILLSTAEGIPLMHAVRPSFSSFPPA---SSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLSPLVLSFVGYAATATAMEL---------GQENDLASCTPSLTGGGAEGGLEGGREGVLGSVFPLQLMNVGMILDSQHVYAEALAPLRAAVEASEREA-AKGRIL 194
            MR+ELT+VDPVVQQ+FDQLL+RHPDVE ILLSTA+GIPLM AVRP+   FP +   SS+S +E++++A+FSIA DQARKLG+G+C SIVSLYQGLTLV +NL+PLVLSFVGYA   +A  +         GQE          +      G EGGRE  L    PLQLMNVGMILDSQ  + EALAPLR  VEASERE+   GR L
Sbjct:    1 MRKELTSVDPVVQQAFDQLLLRHPDVEAILLSTADGIPLMRAVRPTSPCFPSSTASSSLSTIESKVSAVFSIAVDQARKLGNGTCNSIVSLYQGLTLVQINLAPLVLSFVGYATIPSAATVLASTSEGKPGQEEQRHHEEGHDSSVAVPLGGEGGREAGLVPPLPLQLMNVGMILDSQAEFREALAPLRGVVEASERESTTSGRSL 206
The following BLAST results are available for this feature:
BLAST of NO21G02280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22740.12.000e-5060.19Mitogen-activated protein kinase kinase 1 interact... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02280NO21G02280Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02280.1NO21G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02280.1.cds1NO21G02280.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02280.1.cds2NO21G02280.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02280.1.cds3NO21G02280.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02280.1 ID=NO21G02280.1|Name=NO21G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=775bp
AGTACAGGCGCTATCATTTCCACCAAAAGCAGCATCATCATCAGCAGCAT
TTGTAGCCGGGGGTCACCATGCGGCAAGAGCTCACGACCGTGGACCCCGT
CGTCCAACAATCTTTTGACCAGCTCCTCATCCGGCATCCAGACGTGGAAA
TTATTCTTCTCAGCACCGCAGAGGGCATCCCATTGATGCACGCCGTCCGT
CCCTCTTTTTCCTCTTTCCCTCCCGCCTCCTCCATATCCGTCCTCGAGAC
CCGAATCACTGCCATCTTCAGTATTGCCGCCGACCAAGCTCGAAAACTGG
GCCATGGCTCCTGTAAATCCATCGTCTCTCTATATCAGGGCTTGACGCTT
GTGCACGTCAATCTGTCTCCACTTGTTCTTTCTTTTGTGGGATACGCCGC
GACTGCAACTGCCATGGAGCTTGGGCAAGAGAACGATTTGGCCTCGTGCA
CACCATCCTTGACAGGAGGGGGAGCGGAGGGGGGGCTGGAGGGAGGGAGG
GAAGGAGTGTTGGGGTCGGTTTTTCCATTGCAATTGATGAATGTGGGCAT
GATATTGGATTCGCAGCATGTATATGCAGAGGCGCTGGCGCCATTGAGAG
CAGCAGTTGAAGCGTCGGAAAGGGAGGCAGCCAAAGGAAGGATACTGTAA
GGGGAGCTGCAAGGTTGAGGAGGAAGAAAGGGCGATCGAATAGCCATGAG
TAGGTAAATGTGAAAATGATATCACAAATTTAAAGAAAAAGAAAAGAGAA
ATACAAGGAAGCCCGGAAGCCAGCC
back to top

protein sequence of NO21G02280.1

>NO21G02280.1-protein ID=NO21G02280.1-protein|Name=NO21G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MRQELTTVDPVVQQSFDQLLIRHPDVEIILLSTAEGIPLMHAVRPSFSSF
PPASSISVLETRITAIFSIAADQARKLGHGSCKSIVSLYQGLTLVHVNLS
PLVLSFVGYAATATAMELGQENDLASCTPSLTGGGAEGGLEGGREGVLGS
VFPLQLMNVGMILDSQHVYAEALAPLRAAVEASEREAAKGRIL*
back to top

mRNA from alignment at chr21:689133..690306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02280.1 ID=NO21G02280.1|Name=NO21G02280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp|location=Sequence derived from alignment at chr21:689133..690306- (Nannochloropsis oceanica)
AGTACAGGCGCTATCATTTCCACCAAAAGCAGCATCATCATCAGCAGCAT
TTGTAGCCGGGGGTCACCATGCGGCAAGAGCTCACGACCGTGGTAAGAGA
GGAGGAGACTCTTCTCCCTCCTCCCTCCCTCCCTCCCTCCTTCCCTACTT
GCTCTCCTACCATCGTCGCAAATCCGTTGCTTATGCGGCTGTCTCGTTAC
AACCCGCTCACCAAGATTTTAACAAGCTCCTGGCTCTTTCTTCTGCACAC
TTTCCCCCTGTGTTCCCTCCTGTTTTGGCCCTCGGTCATCCACTGATGTC
CCGCCTTCCCTCCGTTCGTACTCTTCCTATGCGTAGGACCCCGTCGTCCA
ACAATCTTTTGACCAGCTCCTCATCCGGCATCCAGACGTGGAAATTATTC
TTCTCAGCACCGCAGAGGGCATCCCATTGATGCACGGTACGTCTATAAAC
AAATCCTCCCCTCCCTCCTTCCCTCCCTCCCACAATCCTCCCCCCCCCAC
ACGTTTCCTATCTCACTTTTCGAAACTCCCCTTCCTCTGAAGATTCACCC
TAGTTCCTCTCCCAACATTCTAAATAATTCAACACAAGCAGCCGTCCGTC
CCTCTTTTTCCTCTTTCCCTCCCGCCTCCTCCATATCCGTCCTCGAGACC
CGAATCACTGCCATCTTCAGTATTGCCGCCGACCAAGCTCGAAAACTGGG
CCATGGCTCCTGTAAATCCATCGTCTCTCTATATCAGGGCTTGACGCTTG
TGCACGTCAATCTGTCTCCACTTGTTCTTTCTTTTGTGGGATACGCCGCG
ACTGCAACTGCCATGGAGCTTGGGCAAGAGAACGATTTGGCCTCGTGCAC
ACCATCCTTGACAGGAGGGGGAGCGGAGGGGGGGCTGGAGGGAGGGAGGG
AAGGAGTGTTGGGGTCGGTTTTTCCATTGCAATTGATGAATGTGGGCATG
ATATTGGATTCGCAGCATGTATATGCAGAGGCGCTGGCGCCATTGAGAGC
AGCAGTTGAAGCGTCGGAAAGGGAGGCAGCCAAAGGAAGGATACTGTAAG
GGGAGCTGCAAGGTTGAGGAGGAAGAAAGGGCGATCGAATAGCCATGAGT
AGGTAAATGTGAAAATGATATCACAAATTTAAAGAAAAAGAAAAGAGAAA
TACAAGGAAGCCCGGAAGCCAGCC
back to top

Coding sequence (CDS) from alignment at chr21:689133..690306-

>NO21G02280.1 ID=NO21G02280.1|Name=NO21G02280.1|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at chr21:689133..690306- (Nannochloropsis oceanica)
ATGCGGCAAGAGCTCACGACCGTGGACCCCGTCGTCCAACAATCTTTTGA
CCAGCTCCTCATCCGGCATCCAGACGTGGAAATTATTCTTCTCAGCACCG
CAGAGGGCATCCCATTGATGCACGCCGTCCGTCCCTCTTTTTCCTCTTTC
CCTCCCGCCTCCTCCATATCCGTCCTCGAGACCCGAATCACTGCCATCTT
CAGTATTGCCGCCGACCAAGCTCGAAAACTGGGCCATGGCTCCTGTAAAT
CCATCGTCTCTCTATATCAGGGCTTGACGCTTGTGCACGTCAATCTGTCT
CCACTTGTTCTTTCTTTTGTGGGATACGCCGCGACTGCAACTGCCATGGA
GCTTGGGCAAGAGAACGATTTGGCCTCGTGCACACCATCCTTGACAGGAG
GGGGAGCGGAGGGGGGGCTGGAGGGAGGGAGGGAAGGAGTGTTGGGGTCG
GTTTTTCCATTGCAATTGATGAATGTGGGCATGATATTGGATTCGCAGCA
TGTATATGCAGAGGCGCTGGCGCCATTGAGAGCAGCAGTTGAAGCGTCGG
AAAGGGAGGCAGCCAAAGGAAGGATACTGTAA
back to top
Synonyms
Publications