NO21G02210, NO21G02210 (gene) Nannochloropsis oceanica

Overview
NameNO21G02210
Unique NameNO21G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1412
Alignment locationchr21:648424..649835 +

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Properties
Property NameValue
DescriptionDNA LIGASE 6
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:648424..649835 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036866RibonucZ/Hydroxyglut_hydro
Vocabulary: Molecular Function
TermDefinition
GO:0016874ligase activity
Homology
BLAST of NO21G02210 vs. NCBI_GenBank
Match: EWM22722.1 (dna ligase [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 5.400e-29
Identity = 95/277 (34.30%), Postives = 119/277 (42.96%), Query Frame = 0
Query:   52 DWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWK--QGGR-EGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWE 326
            +W+TG I+CS ITARLL  +M +Q +Y+ ALPM +EV L      W   +GGR EG L+VTLLDANHCPGACMLLF+V                                                                                            + L+LHCGDMR+HP+ML Y ALL     S       HP                       A  RK+DT++LDTTY HP++ FA Q+DAI+ +GDLIL RLR+EG E
Sbjct:    2 EWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLP-----WNPGRGGREEGGLSVTLLDANHCPGACMLLFRV----------------------------------------------------------------RTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTAS-------HPPR--------------------PARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGRE 182          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: CEM39468.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 129.0 bits (323), Expect = 3.200e-26
Identity = 96/322 (29.81%), Postives = 127/322 (39.44%), Query Frame = 0
Query:    1 MNKDISVHQVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREE 323
            MNKDISVH++  T  LVD FR+   P    RT   FFLSH+HGDHY G+   W+ G I CS ITARLL+ +M + PRY+ A+ +D    +    +G K         VTL+DA+HCPGA M LF++                                                                                           S K +LH GD RFHP++L +PAL             QH                           +KID ++LDTTY HP++ F PQ+ AI+ + D+I E L  E
Sbjct:    1 MNKDISVHEISGTTFLVDFFRR---PLTPPRT---FFLSHYHGDHYSGITDRWDRGVIHCSPITARLLLEIMAVAPRYVKAMALDVAHDMG---DGHK---------VTLIDAHHCPGAVMFLFEL------------------------------------------------------------------------------------------SSGKAFLHTGDFRFHPRILQHPAL-------------QH---------------------------KKIDGIYLDTTYSHPKHVFPPQETAIQSIVDVIQETLASE 174          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_021888311.1 (DNA ligase 6 [Carica papaya])

HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19
Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 0
Query:   10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128
            +PNT  LVDAFR    P+      A FFLSHFH DHY GL+A W+ G IFCS IT+RLL+ V+ +   +I +LP+ + V +                 VTL+DANHCPGA   LFKVP
Sbjct:   56 IPNTRFLVDAFR---FPS-SSNFSASFFLSHFHSDHYAGLSASWSKGIIFCSHITSRLLIDVLQVSSPFIFSLPLQQPVVID-------------GCEVTLVDANHCPGAVQFLFKVP 156          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: GAQ90890.1 (putative DNA ligase 1 [Klebsormidium nitens])

HSP 1 Score: 106.7 bits (265), Expect = 1.700e-19
Identity = 90/352 (25.57%), Postives = 125/352 (35.51%), Query Frame = 0
Query:    9 QVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDAGRAGSAASSVFPPSSVPPAEEGLQENDRPK 361
            ++P T  +VD FR      V       +FL+HFH DHYQG+  +W  G IFCSE TAR++V V+ + P ++  LPMD+EV +                 VTL+DANHCPGA   LF++P                                                                                            K Y+HCGDMRF  +M + P L    AP +                             GA      D V+LDTTYC+PRY F  Q+ ++E +   +  R++E  W    DA       S     ++     EG+   D P+
Sbjct:   84 RLPGTRFVVDGFR------VAGAWSHSYFLTHFHSDHYQGITDNWRKGVIFCSETTARMVVQVLEVPPHFVVPLPMDREVEID-------------GCGVTLIDANHCPGAIQFLFRIP----------------------------------------------------------------------------------------GAPEKRYVHCGDMRFCTQMTANPCL----APYV-----------------------------GA------DAVYLDTTYCNPRYVFPLQEASVEYIAATVAARMQE--WRAEYDAWIKEQPNSGAAAETNPAGDGEGVGSGDPPE 287          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: GAV87473.1 (DNA_ligase_A_M domain-containing protein/DNA_ligase_A_N domain-containing protein/DNA_ligase_A_C domain-containing protein/DRMBL domain-containing protein/Lactamase_B_2 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 105.9 bits (263), Expect = 2.900e-19
Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 0
Query:   10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128
            +PNT  L+DAFR              +FLSHFH DHY GL+  W+ G IFCS+I+ARLL+ V+ + P++I  LP  + V +          G E    VTL+DANHCPGA  LLFKVP
Sbjct:   46 IPNTRFLIDAFR-----LASSDISVSYFLSHFHSDHYSGLSPSWSKGIIFCSQISARLLIQVLKVPPQFIFPLPNHETVVID---------GSE----VTLVDANHCPGAVQLLFKVP 145          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_004364857.2 (ATP dependent DNA ligase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 102.8 bits (255), Expect = 2.500e-18
Identity = 75/296 (25.34%), Postives = 100/296 (33.78%), Query Frame = 0
Query:   35 LFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDA 331
            LFFLSHFH DHY GL   W  G +FCS  TARL++ V+ +  R I  L  +  VT+               + VTL+DANHCPGA M+LFKV                                                                                              +YLH GD R+HP+M  YPAL+Q                                         +I+T+FLDTTYC+P+Y    Q   I+ + + +   +R E    G +A
Sbjct:  107 LFFLSHFHADHYAGLTKTWRAGPVFCSPTTARLVIKVLEVDERMIRPLEFNTPVTIDN-------------VQVTLMDANHCPGAAMMLFKVSNGL------------------------------------------------------------------------------------------VYLHTGDFRYHPRMNDYPALIQ--------------------------------------AQNQIETLFLDTTYCNPKYTLPAQDAPIDFVAETVFNMMRSELQPAGDNA 261          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: KJE90730.1 (ATP dependent DNA ligase [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 102.8 bits (255), Expect = 2.500e-18
Identity = 75/296 (25.34%), Postives = 100/296 (33.78%), Query Frame = 0
Query:   35 LFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDA 331
            LFFLSHFH DHY GL   W  G +FCS  TARL++ V+ +  R I  L  +  VT+               + VTL+DANHCPGA M+LFKV                                                                                              +YLH GD R+HP+M  YPAL+Q                                         +I+T+FLDTTYC+P+Y    Q   I+ + + +   +R E    G +A
Sbjct:  129 LFFLSHFHADHYAGLTKTWRAGPVFCSPTTARLVIKVLEVDERMIRPLEFNTPVTIDN-------------VQVTLMDANHCPGAAMMLFKVSNGL------------------------------------------------------------------------------------------VYLHTGDFRYHPRMNDYPALIQ--------------------------------------AQNQIETLFLDTTYCNPKYTLPAQDAPIDFVAETVFNMMRSELQPAGDNA 283          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_010693565.1 (PREDICTED: DNA ligase 6 [Beta vulgaris subsp. vulgaris] >KMT18610.1 hypothetical protein BVRB_2g027400 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 102.1 bits (253), Expect = 4.200e-18
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0
Query:   10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128
            +P T  ++D FR     ++       +FLSHFH DHY GL + WN G IFCSEITARL+V V+ +   ++  LPM++ V +  D E            VTL+DANHCPGA   LFKVP
Sbjct:   39 IPKTRFIIDGFRNSGEHSLS------YFLSHFHADHYSGLTSTWNRGIIFCSEITARLVVKVLEVSELFVFRLPMNETVVID-DCE------------VTLIDANHCPGAVQFLFKVP 137          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_017179793.1 (PREDICTED: DNA ligase 6 isoform X1 [Malus domestica])

HSP 1 Score: 101.7 bits (252), Expect = 5.500e-18
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPE 129
            +P T   VDAFR     +V       +FLSHFH DHY GL+ +W  G +FCS ITARLL  V+ + P ++ ALP+ + V +               + V L+DANHCPGA   LFK+P+
Sbjct:   51 IPKTRFAVDAFRHAGDHSVS------YFLSHFHSDHYGGLSPNWAKGVVFCSPITARLLTEVLKVSPHFVVALPLGEAVVID-------------GVKVVLIDANHCPGAVQFLFKIPD 150          
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_017179794.1 (PREDICTED: DNA ligase 6 isoform X2 [Malus domestica])

HSP 1 Score: 101.7 bits (252), Expect = 5.500e-18
Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 0
Query:   10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPE 129
            +P T   VDAFR     +V       +FLSHFH DHY GL+ +W  G +FCS ITARLL  V+ + P ++ ALP+ + V +               + V L+DANHCPGA   LFK+P+
Sbjct:   51 IPKTRFAVDAFRHAGDHSVS------YFLSHFHSDHYGGLSPNWAKGVVFCSPITARLLTEVLKVSPHFVVALPLGEAVVID-------------GVKVVLIDANHCPGAVQFLFKIPD 150          
The following BLAST results are available for this feature:
BLAST of NO21G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 5.40e-29 / Id = 34.30Expect = 3.20e-26 / Id = 29.81Expect = 1.30e-19 / Id = 47.46Expect = 1.70e-19 / Id = 25.57Expect = 2.90e-19 / Id = 46.61Expect = 2.50e-18 / Id = 25.34Expect = 2.50e-18 / Id = 25.34Expect = 4.20e-18 / Id = 44.92Expect = 5.50e-18 / Id = 42.02Expect = 5.50e-18 / Id = 42.02SequenceEWM22722.1CEM39468.1XP_021888311.1GAQ90890.1GAV87473.1XP_004364857.2KJE90730.1XP_010693565.1XP_017179793.1XP_017179794.1
Match NameE-valueIdentityDescription
EWM22722.15.400e-2934.30dna ligase [Nannochloropsis gaditana][more]
CEM39468.13.200e-2629.81unnamed protein product [Vitrella brassicaformis C... [more]
XP_021888311.11.300e-1947.46DNA ligase 6 [Carica papaya][more]
GAQ90890.11.700e-1925.57putative DNA ligase 1 [Klebsormidium nitens][more]
GAV87473.12.900e-1946.61DNA_ligase_A_M domain-containing protein/DNA_ligas... [more]
XP_004364857.22.500e-1825.34ATP dependent DNA ligase [Capsaspora owczarzaki AT... [more]
KJE90730.12.500e-1825.34ATP dependent DNA ligase [Capsaspora owczarzaki AT... [more]
XP_010693565.14.200e-1844.92PREDICTED: DNA ligase 6 [Beta vulgaris subsp. vulg... [more]
XP_017179793.15.500e-1842.02PREDICTED: DNA ligase 6 isoform X1 [Malus domestic... [more]
XP_017179794.15.500e-1842.02PREDICTED: DNA ligase 6 isoform X2 [Malus domestic... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02210.1NO21G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|656232gene_8190Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100653g1gene7718Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02210.1NO21G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02210 ID=NO21G02210|Name=NO21G02210|organism=Nannochloropsis oceanica|type=gene|length=1412bp
CCTCGTGCCACCACCGCCGTGTACCATCGCCGCTCTCGAGATTCACTCAG
ACCATCACTACATTTAAAAAACCGTACAGATCTTCCATGCCGTACCGCCG
GTGGAGCGGAAAGTGTGGCGTGTGACTGGAAAGCAGTAACTAGAAGCGCC
ACATCAGCAGCAACAGCTGCACCAACAGACATTCCCACCACCGAACAACC
AACATGAATAAGGATATATCAGTCCACCAAGTCCCCAACACCGCCATCCT
GGTCGACGCCTTTCGTCAATATCACCATCCTGCCGTTGGCCTGCGGACTG
AAGCCCTCTTTTTCCTTTCCCACTTTCACGGGGACCACTACCAAGGCCTG
AATGCCGATTGGAACACGGGTCGCATCTTTTGTTCGGAGATCACAGCTAG
GCTGTTGGTGGGTGTCATGTGCATCCAACCCCGGTACATTTGTGCCTTGC
CCATGGACAAAGAAGTGACCTTGTCCCGCGACAAGGAGGGTTGGAAGCAG
GGCGGGAGGGAGGGAGCGTTGACGGTGACGTTGTTGGACGCCAACCATTG
TCCGGGAGCGTGCATGTTGTTATTCAAGGTCCCTGAAAATCCTCCTGAAG
AGGAAGGTAAAGAAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAG
AAGAGGAGGAGGAGGAGAAGGAGGGAGAGGCCGTCGTGGTGTTGGCCGCG
GTGCTGCTGCTGTTGATGACGAGAATCGGTATGCGAAAAGGGAAAAAGGC
GGTAGCACGGACAGCAGCAGCTGCGACAGTAGCAGCAGTAGCAGCAGTTA
CAGCAGTTACAAGCTGTATCTCCATTGTGGCGACATGCGATTTCATCCCA
AGATGCTCTCCTATCCTGCCCTGCTGCAGCAACCAGCGCCGTCGCTGCAG
CAGCAGATGATACAGCACCCCCAAAATAGCAGCAACAGCAACAGCCGCAC
AGCCGACAAGAACGAAGGGCGGGAAGGAGAAAAGGGAGCCGCAGTGGCGC
GAAAGATCGACACGGTGTTCCTAGACACGACGTATTGCCACCCTCGGTAT
GATTTCGCCCCACAACAAGACGCAATCGAGCTGATGGGAGACCTGATCTT
AGAGAGGTTGAGAGAGGAAGGGTGGGAGGGAGGGAAGGATGCAGGGAGGG
CAGGCTCCGCGGCTTCCTCCGTCTTTCCCCCTTCCTCCGTGCCTCCCGCT
GAGGAAGGCCTCCAAGAAAATGACAGACCGAAAACAGGACACGGTCTCCC
GTCCTCCCCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGAGCAGGGGACA
CAGGCGGCACAAAACCCTCTTCCTCCTCAGCGCCTATAACCTTGGGAAAG
AGCGCGTTTTGA
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protein sequence of NO21G02210.1

>NO21G02210.1-protein ID=NO21G02210.1-protein|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MNKDISVHQVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLN
ADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQG
GREGALTVTLLDANHCPGACMLLFKVPENPPEEEGKERGGGGGGGGGGGG
GGGGGGGGGGGEEGGRRGGGGEGGRGRRGVGRGAAAVDDENRYAKREKGG
STDSSSCDSSSSSSSYSSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQ
QMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYD
FAPQQDAIELMGDLILERLREEGWEGGKDAGRAGSAASSVFPPSSVPPAE
EGLQENDRPKTGHGLPSSPLPPSLPPSLRAGDTGGTKPSSSSAPITLGKS
AF*
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Synonyms
Publications