NO21G02210, NO21G02210 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02210 vs. NCBI_GenBank
Match: EWM22722.1 (dna ligase [Nannochloropsis gaditana]) HSP 1 Score: 138.3 bits (347), Expect = 5.400e-29 Identity = 95/277 (34.30%), Postives = 119/277 (42.96%), Query Frame = 0 Query: 52 DWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWK--QGGR-EGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWE 326 +W+TG I+CS ITARLL +M +Q +Y+ ALPM +EV L W +GGR EG L+VTLLDANHCPGACMLLF+V + L+LHCGDMR+HP+ML Y ALL S HP A RK+DT++LDTTY HP++ FA Q+DAI+ +GDLIL RLR+EG E Sbjct: 2 EWSTGVIYCSTITARLLTNIMGVQAQYVRALPMHEEVPLP-----WNPGRGGREEGGLSVTLLDANHCPGACMLLFRV----------------------------------------------------------------RTCRGSSTRCNGDHSRGAEVSGRERDDEFTLHLHCGDMRYHPRMLHYAALLHDTTAS-------HPPR--------------------PARPRKLDTIYLDTTYAHPKHAFAAQEDAIQSVGDLILARLRKEGRE 182
BLAST of NO21G02210 vs. NCBI_GenBank
Match: CEM39468.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 129.0 bits (323), Expect = 3.200e-26 Identity = 96/322 (29.81%), Postives = 127/322 (39.44%), Query Frame = 0 Query: 1 MNKDISVHQVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREE 323 MNKDISVH++ T LVD FR+ P RT FFLSH+HGDHY G+ W+ G I CS ITARLL+ +M + PRY+ A+ +D + +G K VTL+DA+HCPGA M LF++ S K +LH GD RFHP++L +PAL QH +KID ++LDTTY HP++ F PQ+ AI+ + D+I E L E Sbjct: 1 MNKDISVHEISGTTFLVDFFRR---PLTPPRT---FFLSHYHGDHYSGITDRWDRGVIHCSPITARLLLEIMAVAPRYVKAMALDVAHDMG---DGHK---------VTLIDAHHCPGAVMFLFEL------------------------------------------------------------------------------------------SSGKAFLHTGDFRFHPRILQHPAL-------------QH---------------------------KKIDGIYLDTTYSHPKHVFPPQETAIQSIVDVIQETLASE 174
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_021888311.1 (DNA ligase 6 [Carica papaya]) HSP 1 Score: 107.1 bits (266), Expect = 1.300e-19 Identity = 56/118 (47.46%), Postives = 70/118 (59.32%), Query Frame = 0 Query: 10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128 +PNT LVDAFR P+ A FFLSHFH DHY GL+A W+ G IFCS IT+RLL+ V+ + +I +LP+ + V + VTL+DANHCPGA LFKVP Sbjct: 56 IPNTRFLVDAFR---FPS-SSNFSASFFLSHFHSDHYAGLSASWSKGIIFCSHITSRLLIDVLQVSSPFIFSLPLQQPVVID-------------GCEVTLVDANHCPGAVQFLFKVP 156
BLAST of NO21G02210 vs. NCBI_GenBank
Match: GAQ90890.1 (putative DNA ligase 1 [Klebsormidium nitens]) HSP 1 Score: 106.7 bits (265), Expect = 1.700e-19 Identity = 90/352 (25.57%), Postives = 125/352 (35.51%), Query Frame = 0 Query: 9 QVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDAGRAGSAASSVFPPSSVPPAEEGLQENDRPK 361 ++P T +VD FR V +FL+HFH DHYQG+ +W G IFCSE TAR++V V+ + P ++ LPMD+EV + VTL+DANHCPGA LF++P K Y+HCGDMRF +M + P L AP + GA D V+LDTTYC+PRY F Q+ ++E + + R++E W DA S ++ EG+ D P+ Sbjct: 84 RLPGTRFVVDGFR------VAGAWSHSYFLTHFHSDHYQGITDNWRKGVIFCSETTARMVVQVLEVPPHFVVPLPMDREVEID-------------GCGVTLIDANHCPGAIQFLFRIP----------------------------------------------------------------------------------------GAPEKRYVHCGDMRFCTQMTANPCL----APYV-----------------------------GA------DAVYLDTTYCNPRYVFPLQEASVEYIAATVAARMQE--WRAEYDAWIKEQPNSGAAAETNPAGDGEGVGSGDPPE 287
BLAST of NO21G02210 vs. NCBI_GenBank
Match: GAV87473.1 (DNA_ligase_A_M domain-containing protein/DNA_ligase_A_N domain-containing protein/DNA_ligase_A_C domain-containing protein/DRMBL domain-containing protein/Lactamase_B_2 domain-containing protein [Cephalotus follicularis]) HSP 1 Score: 105.9 bits (263), Expect = 2.900e-19 Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 0 Query: 10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128 +PNT L+DAFR +FLSHFH DHY GL+ W+ G IFCS+I+ARLL+ V+ + P++I LP + V + G E VTL+DANHCPGA LLFKVP Sbjct: 46 IPNTRFLIDAFR-----LASSDISVSYFLSHFHSDHYSGLSPSWSKGIIFCSQISARLLIQVLKVPPQFIFPLPNHETVVID---------GSE----VTLVDANHCPGAVQLLFKVP 145
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_004364857.2 (ATP dependent DNA ligase [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 102.8 bits (255), Expect = 2.500e-18 Identity = 75/296 (25.34%), Postives = 100/296 (33.78%), Query Frame = 0 Query: 35 LFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDA 331 LFFLSHFH DHY GL W G +FCS TARL++ V+ + R I L + VT+ + VTL+DANHCPGA M+LFKV +YLH GD R+HP+M YPAL+Q +I+T+FLDTTYC+P+Y Q I+ + + + +R E G +A Sbjct: 107 LFFLSHFHADHYAGLTKTWRAGPVFCSPTTARLVIKVLEVDERMIRPLEFNTPVTIDN-------------VQVTLMDANHCPGAAMMLFKVSNGL------------------------------------------------------------------------------------------VYLHTGDFRYHPRMNDYPALIQ--------------------------------------AQNQIETLFLDTTYCNPKYTLPAQDAPIDFVAETVFNMMRSELQPAGDNA 261
BLAST of NO21G02210 vs. NCBI_GenBank
Match: KJE90730.1 (ATP dependent DNA ligase [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 102.8 bits (255), Expect = 2.500e-18 Identity = 75/296 (25.34%), Postives = 100/296 (33.78%), Query Frame = 0 Query: 35 LFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQQMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYDFAPQQDAIELMGDLILERLREEGWEGGKDA 331 LFFLSHFH DHY GL W G +FCS TARL++ V+ + R I L + VT+ + VTL+DANHCPGA M+LFKV +YLH GD R+HP+M YPAL+Q +I+T+FLDTTYC+P+Y Q I+ + + + +R E G +A Sbjct: 129 LFFLSHFHADHYAGLTKTWRAGPVFCSPTTARLVIKVLEVDERMIRPLEFNTPVTIDN-------------VQVTLMDANHCPGAAMMLFKVSNGL------------------------------------------------------------------------------------------VYLHTGDFRYHPRMNDYPALIQ--------------------------------------AQNQIETLFLDTTYCNPKYTLPAQDAPIDFVAETVFNMMRSELQPAGDNA 283
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_010693565.1 (PREDICTED: DNA ligase 6 [Beta vulgaris subsp. vulgaris] >KMT18610.1 hypothetical protein BVRB_2g027400 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 102.1 bits (253), Expect = 4.200e-18 Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = 0 Query: 10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVP 128 +P T ++D FR ++ +FLSHFH DHY GL + WN G IFCSEITARL+V V+ + ++ LPM++ V + D E VTL+DANHCPGA LFKVP Sbjct: 39 IPKTRFIIDGFRNSGEHSLS------YFLSHFHADHYSGLTSTWNRGIIFCSEITARLVVKVLEVSELFVFRLPMNETVVID-DCE------------VTLIDANHCPGAVQFLFKVP 137
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_017179793.1 (PREDICTED: DNA ligase 6 isoform X1 [Malus domestica]) HSP 1 Score: 101.7 bits (252), Expect = 5.500e-18 Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 0 Query: 10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPE 129 +P T VDAFR +V +FLSHFH DHY GL+ +W G +FCS ITARLL V+ + P ++ ALP+ + V + + V L+DANHCPGA LFK+P+ Sbjct: 51 IPKTRFAVDAFRHAGDHSVS------YFLSHFHSDHYGGLSPNWAKGVVFCSPITARLLTEVLKVSPHFVVALPLGEAVVID-------------GVKVVLIDANHCPGAVQFLFKIPD 150
BLAST of NO21G02210 vs. NCBI_GenBank
Match: XP_017179794.1 (PREDICTED: DNA ligase 6 isoform X2 [Malus domestica]) HSP 1 Score: 101.7 bits (252), Expect = 5.500e-18 Identity = 50/119 (42.02%), Postives = 67/119 (56.30%), Query Frame = 0 Query: 10 VPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKVPE 129 +P T VDAFR +V +FLSHFH DHY GL+ +W G +FCS ITARLL V+ + P ++ ALP+ + V + + V L+DANHCPGA LFK+P+ Sbjct: 51 IPKTRFAVDAFRHAGDHSVS------YFLSHFHSDHYGGLSPNWAKGVVFCSPITARLLTEVLKVSPHFVVALPLGEAVVID-------------GVKVVLIDANHCPGAVQFLFKIPD 150 The following BLAST results are available for this feature:
BLAST of NO21G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02210 ID=NO21G02210|Name=NO21G02210|organism=Nannochloropsis oceanica|type=gene|length=1412bpback to top protein sequence of NO21G02210.1 >NO21G02210.1-protein ID=NO21G02210.1-protein|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bpback to top Synonyms
Publications
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