NO21G02210.1, NO21G02210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02210.1
Unique NameNO21G02210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1412
Alignment locationchr21:648424..649835 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:648424..649835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02210.1 vs.
Match: CEM39468.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 114.4 bits (285), Expect = 8.300e-22
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0 
Query:    1 MNKDISVHQVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLNADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQGGREGALTVTLLDANHCPGACMLLFKV 127
            MNKDISVH++  T  LVD FR+   P    RT   FFLSH+HGDHY G+   W+ G I CS ITARLL+ +M + PRY+ A+ +D    +    +G K         VTL+DA+HCPGA M LF++
Sbjct:    1 MNKDISVHEISGTTFLVDFFRR---PLTPPRT---FFLSHYHGDHYSGITDRWDRGVIHCSPITARLLLEIMAVAPRYVKAMALDVAHDMG---DGHK---------VTLIDAHHCPGAVMFLFEL 108
The following BLAST results are available for this feature:
BLAST of NO21G02210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400SequenceCEM39468.1
Match NameE-valueIdentityDescription
CEM39468.18.300e-2247.62unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02210NO21G02210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02210.1NO21G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02210.1.cds1NO21G02210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02210.1 ID=NO21G02210.1|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
CCTCGTGCCACCACCGCCGTGTACCATCGCCGCTCTCGAGATTCACTCAG
ACCATCACTACATTTAAAAAACCGTACAGATCTTCCATGCCGTACCGCCG
GTGGAGCGGAAAGTGTGGCGTGTGACTGGAAAGCAGTAACTAGAAGCGCC
ACATCAGCAGCAACAGCTGCACCAACAGACATTCCCACCACCGAACAACC
AACATGAATAAGGATATATCAGTCCACCAAGTCCCCAACACCGCCATCCT
GGTCGACGCCTTTCGTCAATATCACCATCCTGCCGTTGGCCTGCGGACTG
AAGCCCTCTTTTTCCTTTCCCACTTTCACGGGGACCACTACCAAGGCCTG
AATGCCGATTGGAACACGGGTCGCATCTTTTGTTCGGAGATCACAGCTAG
GCTGTTGGTGGGTGTCATGTGCATCCAACCCCGGTACATTTGTGCCTTGC
CCATGGACAAAGAAGTGACCTTGTCCCGCGACAAGGAGGGTTGGAAGCAG
GGCGGGAGGGAGGGAGCGTTGACGGTGACGTTGTTGGACGCCAACCATTG
TCCGGGAGCGTGCATGTTGTTATTCAAGGTCCCTGAAAATCCTCCTGAAG
AGGAAGGTAAAGAAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAG
AAGAGGAGGAGGAGGAGAAGGAGGGAGAGGCCGTCGTGGTGTTGGCCGCG
GTGCTGCTGCTGTTGATGACGAGAATCGGTATGCGAAAAGGGAAAAAGGC
GGTAGCACGGACAGCAGCAGCTGCGACAGTAGCAGCAGTAGCAGCAGTTA
CAGCAGTTACAAGCTGTATCTCCATTGTGGCGACATGCGATTTCATCCCA
AGATGCTCTCCTATCCTGCCCTGCTGCAGCAACCAGCGCCGTCGCTGCAG
CAGCAGATGATACAGCACCCCCAAAATAGCAGCAACAGCAACAGCCGCAC
AGCCGACAAGAACGAAGGGCGGGAAGGAGAAAAGGGAGCCGCAGTGGCGC
GAAAGATCGACACGGTGTTCCTAGACACGACGTATTGCCACCCTCGGTAT
GATTTCGCCCCACAACAAGACGCAATCGAGCTGATGGGAGACCTGATCTT
AGAGAGGTTGAGAGAGGAAGGGTGGGAGGGAGGGAAGGATGCAGGGAGGG
CAGGCTCCGCGGCTTCCTCCGTCTTTCCCCCTTCCTCCGTGCCTCCCGCT
GAGGAAGGCCTCCAAGAAAATGACAGACCGAAAACAGGACACGGTCTCCC
GTCCTCCCCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGAGCAGGGGACA
CAGGCGGCACAAAACCCTCTTCCTCCTCAGCGCCTATAACCTTGGGAAAG
AGCGCGTTTTGA
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protein sequence of NO21G02210.1

>NO21G02210.1-protein ID=NO21G02210.1-protein|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MNKDISVHQVPNTAILVDAFRQYHHPAVGLRTEALFFLSHFHGDHYQGLN
ADWNTGRIFCSEITARLLVGVMCIQPRYICALPMDKEVTLSRDKEGWKQG
GREGALTVTLLDANHCPGACMLLFKVPENPPEEEGKERGGGGGGGGGGGG
GGGGGGGGGGGEEGGRRGGGGEGGRGRRGVGRGAAAVDDENRYAKREKGG
STDSSSCDSSSSSSSYSSYKLYLHCGDMRFHPKMLSYPALLQQPAPSLQQ
QMIQHPQNSSNSNSRTADKNEGREGEKGAAVARKIDTVFLDTTYCHPRYD
FAPQQDAIELMGDLILERLREEGWEGGKDAGRAGSAASSVFPPSSVPPAE
EGLQENDRPKTGHGLPSSPLPPSLPPSLRAGDTGGTKPSSSSAPITLGKS
AF*
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mRNA from alignment at chr21:648424..649835+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02210.1 ID=NO21G02210.1|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at chr21:648424..649835+ (Nannochloropsis oceanica)
CCTCGTGCCACCACCGCCGTGTACCATCGCCGCTCTCGAGATTCACTCAG
ACCATCACTACATTTAAAAAACCGTACAGATCTTCCATGCCGTACCGCCG
GTGGAGCGGAAAGTGTGGCGTGTGACTGGAAAGCAGTAACTAGAAGCGCC
ACATCAGCAGCAACAGCTGCACCAACAGACATTCCCACCACCGAACAACC
AACATGAATAAGGATATATCAGTCCACCAAGTCCCCAACACCGCCATCCT
GGTCGACGCCTTTCGTCAATATCACCATCCTGCCGTTGGCCTGCGGACTG
AAGCCCTCTTTTTCCTTTCCCACTTTCACGGGGACCACTACCAAGGCCTG
AATGCCGATTGGAACACGGGTCGCATCTTTTGTTCGGAGATCACAGCTAG
GCTGTTGGTGGGTGTCATGTGCATCCAACCCCGGTACATTTGTGCCTTGC
CCATGGACAAAGAAGTGACCTTGTCCCGCGACAAGGAGGGTTGGAAGCAG
GGCGGGAGGGAGGGAGCGTTGACGGTGACGTTGTTGGACGCCAACCATTG
TCCGGGAGCGTGCATGTTGTTATTCAAGGTCCCTGAAAATCCTCCTGAAG
AGGAAGGTAAAGAAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAG
AAGAGGAGGAGGAGGAGAAGGAGGGAGAGGCCGTCGTGGTGTTGGCCGCG
GTGCTGCTGCTGTTGATGACGAGAATCGGTATGCGAAAAGGGAAAAAGGC
GGTAGCACGGACAGCAGCAGCTGCGACAGTAGCAGCAGTAGCAGCAGTTA
CAGCAGTTACAAGCTGTATCTCCATTGTGGCGACATGCGATTTCATCCCA
AGATGCTCTCCTATCCTGCCCTGCTGCAGCAACCAGCGCCGTCGCTGCAG
CAGCAGATGATACAGCACCCCCAAAATAGCAGCAACAGCAACAGCCGCAC
AGCCGACAAGAACGAAGGGCGGGAAGGAGAAAAGGGAGCCGCAGTGGCGC
GAAAGATCGACACGGTGTTCCTAGACACGACGTATTGCCACCCTCGGTAT
GATTTCGCCCCACAACAAGACGCAATCGAGCTGATGGGAGACCTGATCTT
AGAGAGGTTGAGAGAGGAAGGGTGGGAGGGAGGGAAGGATGCAGGGAGGG
CAGGCTCCGCGGCTTCCTCCGTCTTTCCCCCTTCCTCCGTGCCTCCCGCT
GAGGAAGGCCTCCAAGAAAATGACAGACCGAAAACAGGACACGGTCTCCC
GTCCTCCCCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGAGCAGGGGACA
CAGGCGGCACAAAACCCTCTTCCTCCTCAGCGCCTATAACCTTGGGAAAG
AGCGCGTTTTGA
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Coding sequence (CDS) from alignment at chr21:648424..649835+

>NO21G02210.1 ID=NO21G02210.1|Name=NO21G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr21:648424..649835+ (Nannochloropsis oceanica)
ATGAATAAGGATATATCAGTCCACCAAGTCCCCAACACCGCCATCCTGGT
CGACGCCTTTCGTCAATATCACCATCCTGCCGTTGGCCTGCGGACTGAAG
CCCTCTTTTTCCTTTCCCACTTTCACGGGGACCACTACCAAGGCCTGAAT
GCCGATTGGAACACGGGTCGCATCTTTTGTTCGGAGATCACAGCTAGGCT
GTTGGTGGGTGTCATGTGCATCCAACCCCGGTACATTTGTGCCTTGCCCA
TGGACAAAGAAGTGACCTTGTCCCGCGACAAGGAGGGTTGGAAGCAGGGC
GGGAGGGAGGGAGCGTTGACGGTGACGTTGTTGGACGCCAACCATTGTCC
GGGAGCGTGCATGTTGTTATTCAAGGTCCCTGAAAATCCTCCTGAAGAGG
AAGGTAAAGAAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGAAGGAGGAAGAAG
AGGAGGAGGAGGAGAAGGAGGGAGAGGCCGTCGTGGTGTTGGCCGCGGTG
CTGCTGCTGTTGATGACGAGAATCGGTATGCGAAAAGGGAAAAAGGCGGT
AGCACGGACAGCAGCAGCTGCGACAGTAGCAGCAGTAGCAGCAGTTACAG
CAGTTACAAGCTGTATCTCCATTGTGGCGACATGCGATTTCATCCCAAGA
TGCTCTCCTATCCTGCCCTGCTGCAGCAACCAGCGCCGTCGCTGCAGCAG
CAGATGATACAGCACCCCCAAAATAGCAGCAACAGCAACAGCCGCACAGC
CGACAAGAACGAAGGGCGGGAAGGAGAAAAGGGAGCCGCAGTGGCGCGAA
AGATCGACACGGTGTTCCTAGACACGACGTATTGCCACCCTCGGTATGAT
TTCGCCCCACAACAAGACGCAATCGAGCTGATGGGAGACCTGATCTTAGA
GAGGTTGAGAGAGGAAGGGTGGGAGGGAGGGAAGGATGCAGGGAGGGCAG
GCTCCGCGGCTTCCTCCGTCTTTCCCCCTTCCTCCGTGCCTCCCGCTGAG
GAAGGCCTCCAAGAAAATGACAGACCGAAAACAGGACACGGTCTCCCGTC
CTCCCCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCGAGCAGGGGACACAG
GCGGCACAAAACCCTCTTCCTCCTCAGCGCCTATAACCTTGGGAAAGAGC
GCGTTTTGA
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Synonyms
Publications