NO21G02200, NO21G02200 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO21G02200 vs. NCBI_GenBank
Match: XP_005855843.1 (hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526] >EKU20516.1 hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 214.2 bits (544), Expect = 4.200e-52 Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0 Query: 1 MSFTAKEWTEEYKRSRAFVINLR-SXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221 M+FTA+EWTEEY R + I+LR S LANLEQS+DKLDYRLG MEQNPGQFG+++S+VVRRRELVKGLR Q S++ II EQDELLEDLGKGVDRLKM+GL IRDET +H KLL+DIDGDVEAAASSLR+EARHAQR+REQSTVCRLY+CI XXXXXXXXXXIGFT Sbjct: 1 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLG--TSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAIXXXXXXXXXXIGFT 219
BLAST of NO21G02200 vs. NCBI_GenBank
Match: EWM22724.1 (qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis gaditana]) HSP 1 Score: 214.2 bits (544), Expect = 4.200e-52 Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0 Query: 1 MSFTAKEWTEEYKRSRAFVINLR-SXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221 M+FTA+EWTEEY R + I+LR S LANLEQS+DKLDYRLG MEQNPGQFG+++S+VVRRRELVKGLR Q S++ II EQDELLEDLGKGVDRLKM+GL IRDET +H KLL+DIDGDVEAAASSLR+EARHAQR+REQSTVCRLY+CI XXXXXXXXXXIGFT Sbjct: 40 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLG--TSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAIXXXXXXXXXXIGFT 258
BLAST of NO21G02200 vs. NCBI_GenBank
Match: CBN75499.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 78.2 bits (191), Expect = 3.600e-11 Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 0 Query: 132 ISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIV 206 + E D +L DLG+GV RLK + + I +ET++H +LLDD++GD E A+S L EARHA+++RE+S LY+ I+ Sbjct: 66 MKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIIL 139
BLAST of NO21G02200 vs. NCBI_GenBank
Match: XP_002295831.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64548.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 67.8 bits (164), Expect = 4.900e-8 Identity = 47/165 (28.48%), Postives = 77/165 (46.67%), Query Frame = 0 Query: 41 ANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIV 206 ++++ +++LD +L +E G +T +E+ RRR L+ GLR Q + +QD+++++L GV RLK + I ET H +LLD++D +V+ A L E R A RLRE+S+V +L+L IV Sbjct: 42 SSIQTGVNRLDAQLNALE---GNLTMTPAEIGRRRNLLDGLRGQLG-------------------------SSGASQPGYGRGGESSTAAALRQQDDMIDELAVGVGRLKNQTNLIHQETNAHVRLLDEMDTNVDLANQGLEDETRRAMRLREESSVWKLHLIIV 178
BLAST of NO21G02200 vs. NCBI_GenBank
Match: GAX23906.1 (hypothetical protein FisN_20Hh113 [Fistulifera solaris]) HSP 1 Score: 64.7 bits (156), Expect = 4.100e-7 Identity = 55/220 (25.00%), Postives = 85/220 (38.64%), Query Frame = 0 Query: 1 MSFTAKEWTEEYKRSRAFVINLRSXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221 MS T +W EY R +R+ L + + L L +EQ ++ + ++E RRR L++ LR+Q + QD+L++DL GV RL+ + I +E MH LL D++ +++AA SL+ E R A RLRE S+V RL L + +G T Sbjct: 1 MSIT--DWDNEYARLARAASQMRT-------------SGLVSRSGDVQSLQQGLQRLEQQLSEYNLPQTEAQRRRRLIQHLRSQ-------------------------QPSGGYQPPQPTDAPLSHVTLAMQRQDDLIDDLAIGVGRLRNQTSAIGEEARMHVTLLGDMENNLDAAQDSLQEETRRAMRLREDSSVWRLQLIVAGLFILLVFLILMGLT 180
BLAST of NO21G02200 vs. NCBI_GenBank
Match: GAX11832.1 (hypothetical protein FisN_20Lh113 [Fistulifera solaris]) HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7 Identity = 55/220 (25.00%), Postives = 84/220 (38.18%), Query Frame = 0 Query: 1 MSFTAKEWTEEYKRSRAFVINLRSXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221 MS T +W EY R +R+ L + + L L +EQ + + ++E RRR L++ LR+Q + QD+L++DL GV RL+ + I +E MH LL D++ +++AA SL+ E R A RLRE S+V RL L + +G T Sbjct: 1 MSIT--DWDNEYARLARAASQMRT-------------SGLVSRSGDVQSLQQGLQRLEQQLSDYNLPQTEAQRRRRLIQHLRSQ-------------------------QPSGGYEPPQPTDAPVSQVTLAMQRQDDLIDDLAIGVGRLRNQTSAIGEEARMHVTLLGDMENNLDAAQDSLQEETRRAMRLREDSSVWRLQLIVAGLFILLVFLILMGLT 180 The following BLAST results are available for this feature:
BLAST of NO21G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6 Position : 0 Zoom : x 1
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO21G02200 ID=NO21G02200|Name=NO21G02200|organism=Nannochloropsis oceanica|type=gene|length=2203bpback to top protein sequence of NO21G02200.1 >NO21G02200.1-protein ID=NO21G02200.1-protein|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bpback to top Synonyms
Publications
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