NO21G02200, NO21G02200 (gene) Nannochloropsis oceanica

Overview
NameNO21G02200
Unique NameNO21G02200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2203
Alignment locationchr21:646215..648417 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:646215..648417 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO21G02200 vs. NCBI_GenBank
Match: XP_005855843.1 (hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526] >EKU20516.1 hypothetical protein NGA_0569400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 214.2 bits (544), Expect = 4.200e-52
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0
Query:    1 MSFTAKEWTEEYKRSRAFVINLR-SXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221
            M+FTA+EWTEEY R +   I+LR S               LANLEQS+DKLDYRLG MEQNPGQFG+++S+VVRRRELVKGLR Q S++                                          II EQDELLEDLGKGVDRLKM+GL IRDET +H KLL+DIDGDVEAAASSLR+EARHAQR+REQSTVCRLY+CI  XXXXXXXXXXIGFT
Sbjct:    1 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLG--TSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAIXXXXXXXXXXIGFT 219          
BLAST of NO21G02200 vs. NCBI_GenBank
Match: EWM22724.1 (qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis gaditana])

HSP 1 Score: 214.2 bits (544), Expect = 4.200e-52
Identity = 132/221 (59.73%), Postives = 149/221 (67.42%), Query Frame = 0
Query:    1 MSFTAKEWTEEYKRSRAFVINLR-SXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221
            M+FTA+EWTEEY R +   I+LR S               LANLEQS+DKLDYRLG MEQNPGQFG+++S+VVRRRELVKGLR Q S++                                          II EQDELLEDLGKGVDRLKM+GL IRDET +H KLL+DIDGDVEAAASSLR+EARHAQR+REQSTVCRLY+CI  XXXXXXXXXXIGFT
Sbjct:   40 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLG--TSSHGTNGLVTGTTRDGSAASGGGGVPGGLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAIXXXXXXXXXXIGFT 258          
BLAST of NO21G02200 vs. NCBI_GenBank
Match: CBN75499.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 78.2 bits (191), Expect = 3.600e-11
Identity = 36/74 (48.65%), Postives = 54/74 (72.97%), Query Frame = 0
Query:  132 ISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIV 206
            + E D +L DLG+GV RLK + + I +ET++H +LLDD++GD E A+S L  EARHA+++RE+S    LY+ I+
Sbjct:   66 MKEHDRMLADLGRGVGRLKTQSVMINEETSLHVRLLDDMEGDAERASSGLLTEARHAEKIREKSKTFNLYVIIL 139          
BLAST of NO21G02200 vs. NCBI_GenBank
Match: XP_002295831.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64548.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 67.8 bits (164), Expect = 4.900e-8
Identity = 47/165 (28.48%), Postives = 77/165 (46.67%), Query Frame = 0
Query:   41 ANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIV 206
            ++++  +++LD +L  +E   G   +T +E+ RRR L+ GLR Q                                               + +QD+++++L  GV RLK +   I  ET  H +LLD++D +V+ A   L  E R A RLRE+S+V +L+L IV
Sbjct:   42 SSIQTGVNRLDAQLNALE---GNLTMTPAEIGRRRNLLDGLRGQLG-------------------------SSGASQPGYGRGGESSTAAALRQQDDMIDELAVGVGRLKNQTNLIHQETNAHVRLLDEMDTNVDLANQGLEDETRRAMRLREESSVWKLHLIIV 178          
BLAST of NO21G02200 vs. NCBI_GenBank
Match: GAX23906.1 (hypothetical protein FisN_20Hh113 [Fistulifera solaris])

HSP 1 Score: 64.7 bits (156), Expect = 4.100e-7
Identity = 55/220 (25.00%), Postives = 85/220 (38.64%), Query Frame = 0
Query:    1 MSFTAKEWTEEYKRSRAFVINLRSXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221
            MS T  +W  EY R       +R+               L +    +  L   L  +EQ   ++ + ++E  RRR L++ LR+Q                                               +  QD+L++DL  GV RL+ +   I +E  MH  LL D++ +++AA  SL+ E R A RLRE S+V RL L +            +G T
Sbjct:    1 MSIT--DWDNEYARLARAASQMRT-------------SGLVSRSGDVQSLQQGLQRLEQQLSEYNLPQTEAQRRRRLIQHLRSQ-------------------------QPSGGYQPPQPTDAPLSHVTLAMQRQDDLIDDLAIGVGRLRNQTSAIGEEARMHVTLLGDMENNLDAAQDSLQEETRRAMRLREDSSVWRLQLIVAGLFILLVFLILMGLT 180          
BLAST of NO21G02200 vs. NCBI_GenBank
Match: GAX11832.1 (hypothetical protein FisN_20Lh113 [Fistulifera solaris])

HSP 1 Score: 63.9 bits (154), Expect = 7.000e-7
Identity = 55/220 (25.00%), Postives = 84/220 (38.18%), Query Frame = 0
Query:    1 MSFTAKEWTEEYKRSRAFVINLRSXXXXXXXXXXXXXXXLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVXXXXXXXXXXXIGFT 221
            MS T  +W  EY R       +R+               L +    +  L   L  +EQ    + + ++E  RRR L++ LR+Q                                               +  QD+L++DL  GV RL+ +   I +E  MH  LL D++ +++AA  SL+ E R A RLRE S+V RL L +            +G T
Sbjct:    1 MSIT--DWDNEYARLARAASQMRT-------------SGLVSRSGDVQSLQQGLQRLEQQLSDYNLPQTEAQRRRRLIQHLRSQ-------------------------QPSGGYEPPQPTDAPVSQVTLAMQRQDDLIDDLAIGVGRLRNQTSAIGEEARMHVTLLGDMENNLDAAQDSLQEETRRAMRLREDSSVWRLQLIVAGLFILLVFLILMGLT 180          
The following BLAST results are available for this feature:
BLAST of NO21G02200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceXP_005855843.1EWM22724.1CBN75499.1XP_002295831.1GAX23906.1GAX11832.1
Match NameE-valueIdentityDescription
XP_005855843.14.200e-5259.73hypothetical protein NGA_0569400 [Nannochloropsis ... [more]
EWM22724.14.200e-5259.73qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis ... [more]
CBN75499.13.600e-1148.65Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
XP_002295831.14.900e-828.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
GAX23906.14.100e-725.00hypothetical protein FisN_20Hh113 [Fistulifera sol... [more]
GAX11832.17.000e-725.00hypothetical protein FisN_20Lh113 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02200.1NO21G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|632949gene_8189Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR12gene7719Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02200.1NO21G02200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02200 ID=NO21G02200|Name=NO21G02200|organism=Nannochloropsis oceanica|type=gene|length=2203bp
GGGCACCACGAATAATTGCCACGCACCTTGCCATTGCCTTGACTGCTGTA
TTTGCGGGTTTGTCGGTTGGGGTTAGTGTGGAAAGCGGAGTGATTGATCG
GTGTGTGGTGGTGGGGGGGAGGTCAAGTGATAAGGGGGAAAAACCATGAG
ACTGAAACGCAGGATCAATGCGACGAGCAACACTTCGCTACCGCATATGA
CAATTCTATTGTCAAAATGGAAAGCCTACATGTTCTGATGCTTTATGTGA
GTGGTTTCGGGATTAGGCCTCGAGAGCAGTAATGATGGCCTTGGGATGAA
GAAAGCTTGACGACACTACCGCTTTGTCGGAGACACAGTTCCATGGACCC
AACACTTTCCACTCGCACCTACAAACATCATACACATTGCACACAGGCAG
CCGCTGCACACAGCACTAGGCAATCACCATGTCCTTCACCGCGAAGGAAT
GGACGGAGGAGTACAAACGCTCAAGGGCATTTGTCATAAACCTTAGAAGC
TCATCCTCCGCCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAGCAACTGGC
GAATCTCGAGCAGAGCATCGACAAGCTCGACTACCGCTTGGGATTGATGG
AGCAAAATCCTGGGCAATTTGGCGTgtacgttctggaagaagggagggag
ggaaggagggaaagagggaccttgtgtagggcgggcttttcaaagtctgt
tcaccgctgaggggaaagcagcgggagaaggggggaagtttgtttggggg
cctaagcggacgagagacgacggcagtgcgctatcccacaacctaggtgt
aaatatgtatgtgacgtgtttgttccgcacgagagggaattgggaatgat
ttgatcactcccgtctgccaccgtcgtcatgggtgccagggttgttggca
catattacatccccaagactcatgagaaagagaaatagggtagtggtagt
gtagatggcgaagacgtagggcttgtcgctgttttaagtcttcaccaatt
cctgaacagtctctcccctctccccgatcccgcgcctgcaccttcactgc
ctccttcccaaacacagccttacccttacttggtggtttcgaatagcctt
gattttctcatcgctcggtttatgtctcttcctcagtcacttacaccact
ccgtccttccttcccttcctccctccctgcctgcctccttcccatagAAC
CGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCCTGCGTACAC
AAGCCTCTGTCATCAACAGTAGCAATCGTAGTACCAGTGCTGGTGGAGGA
GTTGGCGCTGCTTCCTCTTCGTTTTCTGGAGGAGGGGTGGGAGGAGGAGG
AGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGATTATTAGTG
AGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGATAGGTTGAAG
ATGAAGGGGCTGACAATAAGGGACGAGACGACGATGCATCAGAAGCTGTT
GGATGATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCTTGAGGTTGG
AAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTGTGTCGGTTG
TATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTTGCTCGTAAT
TGGCTTTACGTGAAAGGGGCTGTCAATAAATTGAGGCGAGTAGGCGAGGA
GAGAGGAAGAGATAGGCGGTGCTATGGCCCTGGTGTGTAAAAGAAGGAGG
GAAAAAATGGAAAATAAGTCATGATGATGATACTTTTCAAACGGGAAAGG
GATAACGGGACTTGAGCGGCGAAAAGGGCATGGTTTGGAGGCCATTTACA
ACCACTGAGGGCCAGGGTTGTGTACTCAGAATATAGCAAACATAATCTTT
TGTCGTATACATGAGAAGATTTTATCCTCACTTTGCATGGCATTTGTAGA
ACCCATACACGCCCACTTGGCACAGATTTGAAGGCACATATTTTCTTGTT
GGGGAGGTTGATGAGCCTTCACAACATGGTACTTCTCGAGCCAAAAACCA
ATAGAAACGCTGTGTGCCCGAGAAGTTCATCGATTTCAATAGTTTCTGCT
ACTACTTAATGAAGCCTAGCTCGTGGTTTTGATATCTGTGGGCAGTTTTT
GAGTGGGAGAGGGTGCAAAGGGAAAGAAGGATGATGACGCAACGTTTTGT
GAG
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protein sequence of NO21G02200.1

>NO21G02200.1-protein ID=NO21G02200.1-protein|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MSFTAKEWTEEYKRSRAFVINLRSSSSAPASSSSSSRQQLANLEQSIDKL
DYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINSSNRSTSAGGG
VGAASSSFSGGGVGGGGGMGPRTLAQQRREIISEQDELLEDLGKGVDRLK
MKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRL
YLCIVVLLIVLVVLLVIGFT*
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Synonyms
Publications