NO21G02200.1, NO21G02200.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02200.1
Unique NameNO21G02200.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1631
Alignment locationchr21:646215..648417 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:646215..648417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO21G02200.1 vs.
Match: EWM22724.1 (qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 3.800e-69
Identity = 157/223 (70.40%), Postives = 186/223 (83.41%), Query Frame = 0 
Query:    1 MSFTAKEWTEEYKRSRAFVINLRSSSSAPASSSSS-SRQQLANLEQSIDKLDYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINSSNRSTS--AGGGVGAASSSFSGGGVGGGGGMGPRTLAQQRREIISEQDELLEDLGKGVDRLKMKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRLYLCIVVLLIVLVVLLVIGFT 221
            M+FTA+EWTEEY R +   I+LR+S + P+SSSS+ S QQLANLEQS+DKLDYRLG MEQNPGQFG+++S+VVRRRELVKGLR Q S++ +S+  T+    G     S++  GGGV G    G RTLAQQRREII EQDELLEDLGKGVDRLKM+GL IRDET +H KLL+DIDGDVEAAASSLR+EARHAQR+REQSTVCRLY+CI +LLI+LV+LLVIGFT
Sbjct:   40 MAFTAQEWTEEYGRVKTSAIDLRASFATPSSSSSNPSTQQLANLEQSVDKLDYRLGTMEQNPGQFGISQSDVVRRRELVKGLRHQLSLLGTSSHGTNGLVTGTTRDGSAASGGGGVPG----GLRTLAQQRREIIHEQDELLEDLGKGVDRLKMQGLVIRDETGIHHKLLEDIDGDVEAAASSLRMEARHAQRIREQSTVCRLYICIAILLIILVLLLVIGFT 258
The following BLAST results are available for this feature:
BLAST of NO21G02200.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 3.80e-69 / Id = 70.40SequenceEWM22724.1
Match NameE-valueIdentityDescription
EWM22724.13.800e-6970.40qc- syp6 tlg1p syntaxin 6 family [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02200NO21G02200Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02200.1NO21G02200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02200.1.cds1NO21G02200.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02200.1.cds2NO21G02200.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02200.1 ID=NO21G02200.1|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp
GGGCACCACGAATAATTGCCACGCACCTTGCCATTGCCTTGACTGCTGTA
TTTGCGGGTTTGTCGGTTGGGGTTAGTGTGGAAAGCGGAGTGATTGATCG
GTGTGTGGTGGTGGGGGGGAGGTCAAGTGATAAGGGGGAAAAACCATGAG
ACTGAAACGCAGGATCAATGCGACGAGCAACACTTCGCTACCGCATATGA
CAATTCTATTGTCAAAATGGAAAGCCTACATGTTCTGATGCTTTATGTGA
GTGGTTTCGGGATTAGGCCTCGAGAGCAGTAATGATGGCCTTGGGATGAA
GAAAGCTTGACGACACTACCGCTTTGTCGGAGACACAGTTCCATGGACCC
AACACTTTCCACTCGCACCTACAAACATCATACACATTGCACACAGGCAG
CCGCTGCACACAGCACTAGGCAATCACCATGTCCTTCACCGCGAAGGAAT
GGACGGAGGAGTACAAACGCTCAAGGGCATTTGTCATAAACCTTAGAAGC
TCATCCTCCGCCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAGCAACTGGC
GAATCTCGAGCAGAGCATCGACAAGCTCGACTACCGCTTGGGATTGATGG
AGCAAAATCCTGGGCAATTTGGCGTAACCGAGTCCGAGGTCGTGCGTCGC
CGGGAGCTGGTCAAGGGCCTGCGTACACAAGCCTCTGTCATCAACAGTAG
CAATCGTAGTACCAGTGCTGGTGGAGGAGTTGGCGCTGCTTCCTCTTCGT
TTTCTGGAGGAGGGGTGGGAGGAGGAGGAGGGATGGGACCTCGGACGCTG
GCGCAGCAACGAAGGGAGATTATTAGTGAGCAGGATGAGTTGTTAGAGGA
TCTGGGGAAGGGTGTGGATAGGTTGAAGATGAAGGGGCTGACAATAAGGG
ACGAGACGACGATGCATCAGAAGCTGTTGGATGATATCGATGGCGATGTG
GAGGCGGCAGCGTCGTCCTTGAGGTTGGAAGCGCGGCATGCACAACGCCT
TCGGGAGCAGAGCACTGTGTGTCGGTTGTATTTGTGCATCGTCGTGTTGC
TGATTGTTTTAGTGGTGTTGCTCGTAATTGGCTTTACGTGAAAGGGGCTG
TCAATAAATTGAGGCGAGTAGGCGAGGAGAGAGGAAGAGATAGGCGGTGC
TATGGCCCTGGTGTGTAAAAGAAGGAGGGAAAAAATGGAAAATAAGTCAT
GATGATGATACTTTTCAAACGGGAAAGGGATAACGGGACTTGAGCGGCGA
AAAGGGCATGGTTTGGAGGCCATTTACAACCACTGAGGGCCAGGGTTGTG
TACTCAGAATATAGCAAACATAATCTTTTGTCGTATACATGAGAAGATTT
TATCCTCACTTTGCATGGCATTTGTAGAACCCATACACGCCCACTTGGCA
CAGATTTGAAGGCACATATTTTCTTGTTGGGGAGGTTGATGAGCCTTCAC
AACATGGTACTTCTCGAGCCAAAAACCAATAGAAACGCTGTGTGCCCGAG
AAGTTCATCGATTTCAATAGTTTCTGCTACTACTTAATGAAGCCTAGCTC
GTGGTTTTGATATCTGTGGGCAGTTTTTGAGTGGGAGAGGGTGCAAAGGG
AAAGAAGGATGATGACGCAACGTTTTGTGAG
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protein sequence of NO21G02200.1

>NO21G02200.1-protein ID=NO21G02200.1-protein|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MSFTAKEWTEEYKRSRAFVINLRSSSSAPASSSSSSRQQLANLEQSIDKL
DYRLGLMEQNPGQFGVTESEVVRRRELVKGLRTQASVINSSNRSTSAGGG
VGAASSSFSGGGVGGGGGMGPRTLAQQRREIISEQDELLEDLGKGVDRLK
MKGLTIRDETTMHQKLLDDIDGDVEAAASSLRLEARHAQRLREQSTVCRL
YLCIVVLLIVLVVLLVIGFT*
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mRNA from alignment at chr21:646215..648417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02200.1 ID=NO21G02200.1|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=mRNA|length=2203bp|location=Sequence derived from alignment at chr21:646215..648417+ (Nannochloropsis oceanica)
GGGCACCACGAATAATTGCCACGCACCTTGCCATTGCCTTGACTGCTGTA
TTTGCGGGTTTGTCGGTTGGGGTTAGTGTGGAAAGCGGAGTGATTGATCG
GTGTGTGGTGGTGGGGGGGAGGTCAAGTGATAAGGGGGAAAAACCATGAG
ACTGAAACGCAGGATCAATGCGACGAGCAACACTTCGCTACCGCATATGA
CAATTCTATTGTCAAAATGGAAAGCCTACATGTTCTGATGCTTTATGTGA
GTGGTTTCGGGATTAGGCCTCGAGAGCAGTAATGATGGCCTTGGGATGAA
GAAAGCTTGACGACACTACCGCTTTGTCGGAGACACAGTTCCATGGACCC
AACACTTTCCACTCGCACCTACAAACATCATACACATTGCACACAGGCAG
CCGCTGCACACAGCACTAGGCAATCACCATGTCCTTCACCGCGAAGGAAT
GGACGGAGGAGTACAAACGCTCAAGGGCATTTGTCATAAACCTTAGAAGC
TCATCCTCCGCCCCTGCCTCCTCTTCCTCCTCGTCGCGGCAGCAACTGGC
GAATCTCGAGCAGAGCATCGACAAGCTCGACTACCGCTTGGGATTGATGG
AGCAAAATCCTGGGCAATTTGGCGTGTACGTTCTGGAAGAAGGGAGGGAG
GGAAGGAGGGAAAGAGGGACCTTGTGTAGGGCGGGCTTTTCAAAGTCTGT
TCACCGCTGAGGGGAAAGCAGCGGGAGAAGGGGGGAAGTTTGTTTGGGGG
CCTAAGCGGACGAGAGACGACGGCAGTGCGCTATCCCACAACCTAGGTGT
AAATATGTATGTGACGTGTTTGTTCCGCACGAGAGGGAATTGGGAATGAT
TTGATCACTCCCGTCTGCCACCGTCGTCATGGGTGCCAGGGTTGTTGGCA
CATATTACATCCCCAAGACTCATGAGAAAGAGAAATAGGGTAGTGGTAGT
GTAGATGGCGAAGACGTAGGGCTTGTCGCTGTTTTAAGTCTTCACCAATT
CCTGAACAGTCTCTCCCCTCTCCCCGATCCCGCGCCTGCACCTTCACTGC
CTCCTTCCCAAACACAGCCTTACCCTTACTTGGTGGTTTCGAATAGCCTT
GATTTTCTCATCGCTCGGTTTATGTCTCTTCCTCAGTCACTTACACCACT
CCGTCCTTCCTTCCCTTCCTCCCTCCCTGCCTGCCTCCTTCCCATAGAAC
CGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCCTGCGTACAC
AAGCCTCTGTCATCAACAGTAGCAATCGTAGTACCAGTGCTGGTGGAGGA
GTTGGCGCTGCTTCCTCTTCGTTTTCTGGAGGAGGGGTGGGAGGAGGAGG
AGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGATTATTAGTG
AGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGATAGGTTGAAG
ATGAAGGGGCTGACAATAAGGGACGAGACGACGATGCATCAGAAGCTGTT
GGATGATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCTTGAGGTTGG
AAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTGTGTCGGTTG
TATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTTGCTCGTAAT
TGGCTTTACGTGAAAGGGGCTGTCAATAAATTGAGGCGAGTAGGCGAGGA
GAGAGGAAGAGATAGGCGGTGCTATGGCCCTGGTGTGTAAAAGAAGGAGG
GAAAAAATGGAAAATAAGTCATGATGATGATACTTTTCAAACGGGAAAGG
GATAACGGGACTTGAGCGGCGAAAAGGGCATGGTTTGGAGGCCATTTACA
ACCACTGAGGGCCAGGGTTGTGTACTCAGAATATAGCAAACATAATCTTT
TGTCGTATACATGAGAAGATTTTATCCTCACTTTGCATGGCATTTGTAGA
ACCCATACACGCCCACTTGGCACAGATTTGAAGGCACATATTTTCTTGTT
GGGGAGGTTGATGAGCCTTCACAACATGGTACTTCTCGAGCCAAAAACCA
ATAGAAACGCTGTGTGCCCGAGAAGTTCATCGATTTCAATAGTTTCTGCT
ACTACTTAATGAAGCCTAGCTCGTGGTTTTGATATCTGTGGGCAGTTTTT
GAGTGGGAGAGGGTGCAAAGGGAAAGAAGGATGATGACGCAACGTTTTGT
GAG
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Coding sequence (CDS) from alignment at chr21:646215..648417+

>NO21G02200.1 ID=NO21G02200.1|Name=NO21G02200.1|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at chr21:646215..648417+ (Nannochloropsis oceanica)
ATGTCCTTCACCGCGAAGGAATGGACGGAGGAGTACAAACGCTCAAGGGC
ATTTGTCATAAACCTTAGAAGCTCATCCTCCGCCCCTGCCTCCTCTTCCT
CCTCGTCGCGGCAGCAACTGGCGAATCTCGAGCAGAGCATCGACAAGCTC
GACTACCGCTTGGGATTGATGGAGCAAAATCCTGGGCAATTTGGCGTAAC
CGAGTCCGAGGTCGTGCGTCGCCGGGAGCTGGTCAAGGGCCTGCGTACAC
AAGCCTCTGTCATCAACAGTAGCAATCGTAGTACCAGTGCTGGTGGAGGA
GTTGGCGCTGCTTCCTCTTCGTTTTCTGGAGGAGGGGTGGGAGGAGGAGG
AGGGATGGGACCTCGGACGCTGGCGCAGCAACGAAGGGAGATTATTAGTG
AGCAGGATGAGTTGTTAGAGGATCTGGGGAAGGGTGTGGATAGGTTGAAG
ATGAAGGGGCTGACAATAAGGGACGAGACGACGATGCATCAGAAGCTGTT
GGATGATATCGATGGCGATGTGGAGGCGGCAGCGTCGTCCTTGAGGTTGG
AAGCGCGGCATGCACAACGCCTTCGGGAGCAGAGCACTGTGTGTCGGTTG
TATTTGTGCATCGTCGTGTTGCTGATTGTTTTAGTGGTGTTGCTCGTAAT
TGGCTTTACGTGA
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Synonyms
Publications