NO21G02100, NO21G02100 (gene) Nannochloropsis oceanica

Overview
NameNO21G02100
Unique NameNO21G02100
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3423
Alignment locationchr21:619852..623274 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:619852..623274 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf
Homology
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BLAST of NO21G02100 vs. NCBI_GenBank
Match: XP_005855848.1 (hypothetical protein NGA_0569900, partial [Nannochloropsis gaditana CCMP526] >EKU20521.1 hypothetical protein NGA_0569900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 6.000e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:   73 TGWNHLSVEMMHQIARFCQLQDVARFHLLCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSW 141
            TGW  L ++++HQI+  C LQDVA F  +CR W   L+QS  FYPEIC+ HWA+PLCD +  +Y+GSW
Sbjct:    7 TGWATLPIDLLHQISWLCALQDVANFQGVCRTWRSILDQSPSFYPEICRHHWAAPLCDPTSPSYKGSW 74
The following BLAST results are available for this feature:
BLAST of NO21G02100 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855848.16.000e-1554.41hypothetical protein NGA_0569900, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G02100.1NO21G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO21G02100.2NO21G02100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602745gene_8179Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G02100.1NO21G02100.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO21G02100.2NO21G02100.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G02100 ID=NO21G02100|Name=NO21G02100|organism=Nannochloropsis oceanica|type=gene|length=3423bp
GGACGACGGGGGTAGCACATCGTCCCTTTTTTCTTCCACATTTGCATTTT
CCGCTATTTCCTCTGCCCATGGCTCACATCTTACCTTACGTATGCTTAAG
GCCCCGCTTATGCCACTCCTTTCCCTGTCCAGGGGAAAAACTGGGGGAGG
TTACCGAAGAGAAGGCGGCTTCTTGCAGAGGTGTCGGTACTGGAGAGGTG
CACTGATGCTTGCACTTTATTGCGCTCTCAACGAGGGGCGGAAATTGTCA
TGGAAGAAGAAAATTTCGGCCACAAAGGCCACCGACAAGCCTGCCGGGGG
GGCAGTGATGGTGACGGTGTCGGCTTATTTCGCTCCCGTTTGTCAGAAGC
GCTCACTTCCCTACCACACCACCACTTTCCTAATCACAGGCACGCAACCA
TGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAAG
CTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGCA
TCAGgtgagagcagaggggggaactgcggacggaggggaattctaggagg
gtgagacaagctgaaaggaaaatgacggagggcggtagaaagtgctgttg
gttttggggactgtgagaagtagttgctgcaacgcagtagggatgaagag
gaggaggaggaggggggggtcgggaaaggaggagaaggaaatggaggagg
aggaggaggaggagaaggaggtgtaggacgacgatggagcaacaagagga
ggatgatgctcacatcaacctctcccactcaccttcagATCGCTCGTTTT
TGCCAGTTACAAGACGTGGCACGGTTTCATTTGCTGTGCCGGGCCTGGTG
CGAGGGCTTGGAGCAATCGGCATTTTTTTATCCCGAGgtaaggaaagcaa
gggaatgaaagaggatgaatgggcattggaaggctttatggttcaaggag
agtattatttaaacattttggtggtaaactgcactcttacacacccaaag
ggaggcagtacagaagtatgaaactttatcaatcgtaatcagtcaagtat
ctctatcctccttatctcaaaccagatcgtaatcggtgaagtttctccac
tctctaacctttatttctcctaaaatctctataccccccatatctccaaa
aaccagATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCT
TGCTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCG
CCACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACT
TCGTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGG
GGAAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTC
GGGGGCTTTTTGAGgtagggagggagggagggagggagggacgaatggag
gaagggagggaggtatagatagataggaaagtgcgttgcgaatgtaggtg
tattcactaccctccctccttcctccctccctcccttcatcgggacagGC
ATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATTGGAGCTCGGGAAAG
TCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCGAAGCCACGGGGAGG
ATTCTACGGACGTCGGCCTTGATGgtgaggacggaaaggaggacggaaag
gaggaaggtggtgggagatgcctgggctgtagtgatgatgattcaaccgg
actctccctccctgcctccctccctccttccctccctccctccagCGCGC
GTGCCTCTTCGACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACG
ACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGgtacgga
cgtgtcctccccccctccccctccctcctccatcttcctgccccctctca
tcgtcgtcttactcccccttcttccctcccccctccttccctccctcccg
aagGCGTCGAAGTGCCATTGATTTTGTCTCTGATTTCTACGTCGCCAAGT
CCGTCCTTTCCCCCTCCCGCTCCCTCCCGCCCTCCCTCCCTCCCTCTACC
ACCTCTTCTTCTACGCGCGACAAACAACAACAACAACAACAACAACAACA
ACAACAAGAAGGAGAAGGAGGGGAAGGAAAGGAAAAAGAAGAACAACAGC
AGCAGGAGGAGGAGCGACAGTCGGCTCGGCTGTTCGCTCCGGGTCTGGTA
AAGGCGCTGGACATAACGATTGGAAGCACCATTGAAGGTAGTGGAGGGAG
GGGGTGTGAAGGAAGGAGGGAAGGGAGGAGTGGAGGGAGGGAGGGATGGG
TGGAGGGAGGGAGGATGACTTCTTGGACTTCTGCCAGCGATCCAGCTTTG
TTGCGTGTGTCCCCCTCCCGCAATGCTAATCGTCCCCTCCCTCGTTCTCT
CCCTCGTTCCCTCCCTCGTTCCCTCCCTCGTTCCCTCCCTCGTCCCCCCC
CTCGTTTCCTTCCTCCCTACAAACAGAGGCCCTGGAGCTGTTTGTGCCCC
CTGTACCGGGCATTCCGGCGGGGCACTGGTGGTGGTGGGGTAGCATCCAA
ATTGTCAATTATCATCACTGTTGAGATGGGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGTGTCAGCGCACAGCATGTGCTGGCTATAGGCCAAG
CAGTCAAGAAATACACGTTTAAATATTGTAAAAGAGAAAAATGTATATTA
CACTCGTACGGGAGACAGACAAAAACATGTGATGAGGCGTAAGAGAGGAA
GAAATGAAGGGAGGGAAGGAGCTAGGAAAGAGGGAAGGAGGGAAGGGTAA
ATAAGGTGTTGTATGGTATGGGTCGTTTTGATAGCTGATGGAGTATGATA
CAGGAAAGGAAAAGTGAGTCTCCAGACGTCCAGGATGAGCTCCGCATCAC
GAGTTTTGTTCTTTTATTTCACATATCGTGCTTTTTCTTGTTGCTTATGG
TGCACGCCGAAGCCGGCCGATGCTGCACTATGCGGGCGGGGTGTTCTGGC
CTTATGCGTTAAATTTGTTTGGAGGCTTTTGCGGCTCTGACACATGTATC
CCCGGCGTCGATCGCAACATATTTTCATGGTTTGGAAAGAAAATTGTTTT
GATGTCCCTTACAGTCGGAATGGGCCTTCGCTTCGCTTCTCTCTCGCTCC
TCCGTCCTCCTTCGTCCTTGTCTCGGATTCATCCCGGTTCTCTCTCTCTT
TCTGCATGCCTCACTGAACAACCCCCGCAACCACCTTCATCATTATGGTG
TTTCTCTAGCACGCGGTCGTGGGCAAGTTGCGAGCGGCGCCGGGTGCTTT
TGTTTTCTCCAACAAGGCGTTGTAAACCAGCATCATTATCATCATGCTTC
TCACACAGCACTCCCGCCTACAA
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protein sequence of NO21G02100.1

>NO21G02100.1-protein ID=NO21G02100.1-protein|Name=NO21G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MEEENFGHKGHRQACRGGSDGDGVGLFRSRLSEALTSLPHHHFPNHRHAT
MVVVDSASAVHSLAPKKLPLGPTGWNHLSVEMMHQIARFCQLQDVARFHL
LCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSWRMLFLSSVAA
TAPISELLDQGITALTSLKEREEGVEEGREEEGEEVEGEVKVLSQTKSVR
GLFEAFMKATFDLGRKLELGKVSPHSRAFQAYLEATGRILRTSALMVRTE
RRTERRKVVGDAWAVVMMIQPDSPSLPPSLLPSLPPARVPLRLHPSHRRA
EHALRRLERRLRRVAFCALASKCH*
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protein sequence of NO21G02100.2

>NO21G02100.2-protein ID=NO21G02100.2-protein|Name=NO21G02100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MEEENFGHKGHRQACRGGSDGDGVGLFRSRLSEALTSLPHHHFPNHRHAT
MVVVDSASAVHSLAPKKLPLGPTGWNHLSVEMMHQIARFCQLQDVARFHL
LCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSWRMLFLSSVAA
TAPISELLDQGITALTSLKEREEGVEEGREEEGEEVEGEVKVLSQTKSVR
GLFEAFMKATFDLGRKLELGKVSPHSRAFQAYLEATGRILRTSALMRACL
FDFIRHTEELSMHYDVWNGGFVEWPSVPWRRSAIDFVSDFYVAKSVLSPS
RSLPPSLPPSTTSSSTRDKQQQQQQQQQQQEGEGGEGKEKEEQQQQEEER
QSARLFAPGLVKALDITIGSTIEGSGGRGCEGRREGRSGGREGWVEGGRM
TSWTSASDPALLRVSPSRNANRPLPRSLPRSLPRSLPRSLPRPPPRFLPP
YKQRPWSCLCPLYRAFRRGTGGGGVASKLSIIITVEMGKEGGREGGREGV
SAHSMCWL*
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Synonyms
Publications