NO21G02100.2, NO21G02100.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G02100.2
Unique NameNO21G02100.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2505
Alignment locationchr21:619852..623274 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:619852..623274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G02100.2 vs.
Match: XP_005855848.1 (hypothetical protein NGA_0569900, partial [Nannochloropsis gaditana CCMP526]; EKU20521.1 hypothetical protein NGA_0569900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 91.3 bits (225), Expect = 9.500e-15
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:   73 TGWNHLSVEMMHQIARFCQLQDVARFHLLCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSW 141
            TGW  L ++++HQI+  C LQDVA F  +CR W   L+QS  FYPEIC+ HWA+PLCD +  +Y+GSW
Sbjct:    7 TGWATLPIDLLHQISWLCALQDVANFQGVCRTWRSILDQSPSFYPEICRHHWAAPLCDPTSPSYKGSW 74
The following BLAST results are available for this feature:
BLAST of NO21G02100.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400SequenceXP_005855848.1
Match NameE-valueIdentityDescription
XP_005855848.19.500e-1554.41hypothetical protein NGA_0569900, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G02100NO21G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G02100.2NO21G02100.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G02100.2.cds1NO21G02100.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02100.2.cds2NO21G02100.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02100.2.cds3NO21G02100.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02100.2.cds4NO21G02100.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02100.2.cds5NO21G02100.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G02100.2.cds6NO21G02100.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G02100.2 ID=NO21G02100.2|Name=NO21G02100.2|organism=Nannochloropsis oceanica|type=mRNA|length=2505bp
GGACGACGGGGGTAGCACATCGTCCCTTTTTTCTTCCACATTTGCATTTT
CCGCTATTTCCTCTGCCCATGGCTCACATCTTACCTTACGTATGCTTAAG
GCCCCGCTTATGCCACTCCTTTCCCTGTCCAGGGGAAAAACTGGGGGAGG
TTACCGAAGAGAAGGCGGCTTCTTGCAGAGGTGTCGGTACTGGAGAGGTG
CACTGATGCTTGCACTTTATTGCGCTCTCAACGAGGGGCGGAAATTGTCA
TGGAAGAAGAAAATTTCGGCCACAAAGGCCACCGACAAGCCTGCCGGGGG
GGCAGTGATGGTGACGGTGTCGGCTTATTTCGCTCCCGTTTGTCAGAAGC
GCTCACTTCCCTACCACACCACCACTTTCCTAATCACAGGCACGCAACCA
TGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAAG
CTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGCA
TCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTGC
TGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCCC
GAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCTTGC
TGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCGCCA
CTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACTTCG
TTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGGGGA
AGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTCGGG
GGCTTTTTGAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATTG
GAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCGA
AGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGCGCGCGTGCCTCT
TCGACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACGACGTCTGG
AACGGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGGCGTCGAAGTGCCAT
TGATTTTGTCTCTGATTTCTACGTCGCCAAGTCCGTCCTTTCCCCCTCCC
GCTCCCTCCCGCCCTCCCTCCCTCCCTCTACCACCTCTTCTTCTACGCGC
GACAAACAACAACAACAACAACAACAACAACAACAACAAGAAGGAGAAGG
AGGGGAAGGAAAGGAAAAAGAAGAACAACAGCAGCAGGAGGAGGAGCGAC
AGTCGGCTCGGCTGTTCGCTCCGGGTCTGGTAAAGGCGCTGGACATAACG
ATTGGAAGCACCATTGAAGGTAGTGGAGGGAGGGGGTGTGAAGGAAGGAG
GGAAGGGAGGAGTGGAGGGAGGGAGGGATGGGTGGAGGGAGGGAGGATGA
CTTCTTGGACTTCTGCCAGCGATCCAGCTTTGTTGCGTGTGTCCCCCTCC
CGCAATGCTAATCGTCCCCTCCCTCGTTCTCTCCCTCGTTCCCTCCCTCG
TTCCCTCCCTCGTTCCCTCCCTCGTCCCCCCCCTCGTTTCCTTCCTCCCT
ACAAACAGAGGCCCTGGAGCTGTTTGTGCCCCCTGTACCGGGCATTCCGG
CGGGGCACTGGTGGTGGTGGGGTAGCATCCAAATTGTCAATTATCATCAC
TGTTGAGATGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTGT
CAGCGCACAGCATGTGCTGGCTATAGGCCAAGCAGTCAAGAAATACACGT
TTAAATATTGTAAAAGAGAAAAATGTATATTACACTCGTACGGGAGACAG
ACAAAAACATGTGATGAGGCGTAAGAGAGGAAGAAATGAAGGGAGGGAAG
GAGCTAGGAAAGAGGGAAGGAGGGAAGGGTAAATAAGGTGTTGTATGGTA
TGGGTCGTTTTGATAGCTGATGGAGTATGATACAGGAAAGGAAAAGTGAG
TCTCCAGACGTCCAGGATGAGCTCCGCATCACGAGTTTTGTTCTTTTATT
TCACATATCGTGCTTTTTCTTGTTGCTTATGGTGCACGCCGAAGCCGGCC
GATGCTGCACTATGCGGGCGGGGTGTTCTGGCCTTATGCGTTAAATTTGT
TTGGAGGCTTTTGCGGCTCTGACACATGTATCCCCGGCGTCGATCGCAAC
ATATTTTCATGGTTTGGAAAGAAAATTGTTTTGATGTCCCTTACAGTCGG
AATGGGCCTTCGCTTCGCTTCTCTCTCGCTCCTCCGTCCTCCTTCGTCCT
TGTCTCGGATTCATCCCGGTTCTCTCTCTCTTTCTGCATGCCTCACTGAA
CAACCCCCGCAACCACCTTCATCATTATGGTGTTTCTCTAGCACGCGGTC
GTGGGCAAGTTGCGAGCGGCGCCGGGTGCTTTTGTTTTCTCCAACAAGGC
GTTGTAAACCAGCATCATTATCATCATGCTTCTCACACAGCACTCCCGCC
TACAA
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protein sequence of NO21G02100.2

>NO21G02100.2-protein ID=NO21G02100.2-protein|Name=NO21G02100.2|organism=Nannochloropsis oceanica|type=polypeptide|length=509bp
MEEENFGHKGHRQACRGGSDGDGVGLFRSRLSEALTSLPHHHFPNHRHAT
MVVVDSASAVHSLAPKKLPLGPTGWNHLSVEMMHQIARFCQLQDVARFHL
LCRAWCEGLEQSAFFYPEICQTHWASPLCDLSLAAYRGSWRMLFLSSVAA
TAPISELLDQGITALTSLKEREEGVEEGREEEGEEVEGEVKVLSQTKSVR
GLFEAFMKATFDLGRKLELGKVSPHSRAFQAYLEATGRILRTSALMRACL
FDFIRHTEELSMHYDVWNGGFVEWPSVPWRRSAIDFVSDFYVAKSVLSPS
RSLPPSLPPSTTSSSTRDKQQQQQQQQQQQEGEGGEGKEKEEQQQQEEER
QSARLFAPGLVKALDITIGSTIEGSGGRGCEGRREGRSGGREGWVEGGRM
TSWTSASDPALLRVSPSRNANRPLPRSLPRSLPRSLPRSLPRPPPRFLPP
YKQRPWSCLCPLYRAFRRGTGGGGVASKLSIIITVEMGKEGGREGGREGV
SAHSMCWL*
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mRNA from alignment at chr21:619852..623274+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G02100.2 ID=NO21G02100.2|Name=NO21G02100.2|organism=Nannochloropsis oceanica|type=mRNA|length=3423bp|location=Sequence derived from alignment at chr21:619852..623274+ (Nannochloropsis oceanica)
GGACGACGGGGGTAGCACATCGTCCCTTTTTTCTTCCACATTTGCATTTT
CCGCTATTTCCTCTGCCCATGGCTCACATCTTACCTTACGTATGCTTAAG
GCCCCGCTTATGCCACTCCTTTCCCTGTCCAGGGGAAAAACTGGGGGAGG
TTACCGAAGAGAAGGCGGCTTCTTGCAGAGGTGTCGGTACTGGAGAGGTG
CACTGATGCTTGCACTTTATTGCGCTCTCAACGAGGGGCGGAAATTGTCA
TGGAAGAAGAAAATTTCGGCCACAAAGGCCACCGACAAGCCTGCCGGGGG
GGCAGTGATGGTGACGGTGTCGGCTTATTTCGCTCCCGTTTGTCAGAAGC
GCTCACTTCCCTACCACACCACCACTTTCCTAATCACAGGCACGCAACCA
TGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAAG
CTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGCA
TCAGGTGAGAGCAGAGGGGGGAACTGCGGACGGAGGGGAATTCTAGGAGG
GTGAGACAAGCTGAAAGGAAAATGACGGAGGGCGGTAGAAAGTGCTGTTG
GTTTTGGGGACTGTGAGAAGTAGTTGCTGCAACGCAGTAGGGATGAAGAG
GAGGAGGAGGAGGGGGGGGTCGGGAAAGGAGGAGAAGGAAATGGAGGAGG
AGGAGGAGGAGGAGAAGGAGGTGTAGGACGACGATGGAGCAACAAGAGGA
GGATGATGCTCACATCAACCTCTCCCACTCACCTTCAGATCGCTCGTTTT
TGCCAGTTACAAGACGTGGCACGGTTTCATTTGCTGTGCCGGGCCTGGTG
CGAGGGCTTGGAGCAATCGGCATTTTTTTATCCCGAGGTAAGGAAAGCAA
GGGAATGAAAGAGGATGAATGGGCATTGGAAGGCTTTATGGTTCAAGGAG
AGTATTATTTAAACATTTTGGTGGTAAACTGCACTCTTACACACCCAAAG
GGAGGCAGTACAGAAGTATGAAACTTTATCAATCGTAATCAGTCAAGTAT
CTCTATCCTCCTTATCTCAAACCAGATCGTAATCGGTGAAGTTTCTCCAC
TCTCTAACCTTTATTTCTCCTAAAATCTCTATACCCCCCATATCTCCAAA
AACCAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCT
TGCTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCG
CCACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACT
TCGTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGG
GGAAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTC
GGGGGCTTTTTGAGGTAGGGAGGGAGGGAGGGAGGGAGGGACGAATGGAG
GAAGGGAGGGAGGTATAGATAGATAGGAAAGTGCGTTGCGAATGTAGGTG
TATTCACTACCCTCCCTCCTTCCTCCCTCCCTCCCTTCATCGGGACAGGC
ATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATTGGAGCTCGGGAAAG
TCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCGAAGCCACGGGGAGG
ATTCTACGGACGTCGGCCTTGATGGTGAGGACGGAAAGGAGGACGGAAAG
GAGGAAGGTGGTGGGAGATGCCTGGGCTGTAGTGATGATGATTCAACCGG
ACTCTCCCTCCCTGCCTCCCTCCCTCCTTCCCTCCCTCCCTCCAGCGCGC
GTGCCTCTTCGACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACG
ACGTCTGGAACGGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGGTACGGA
CGTGTCCTCCCCCCCTCCCCCTCCCTCCTCCATCTTCCTGCCCCCTCTCA
TCGTCGTCTTACTCCCCCTTCTTCCCTCCCCCCTCCTTCCCTCCCTCCCG
AAGGCGTCGAAGTGCCATTGATTTTGTCTCTGATTTCTACGTCGCCAAGT
CCGTCCTTTCCCCCTCCCGCTCCCTCCCGCCCTCCCTCCCTCCCTCTACC
ACCTCTTCTTCTACGCGCGACAAACAACAACAACAACAACAACAACAACA
ACAACAAGAAGGAGAAGGAGGGGAAGGAAAGGAAAAAGAAGAACAACAGC
AGCAGGAGGAGGAGCGACAGTCGGCTCGGCTGTTCGCTCCGGGTCTGGTA
AAGGCGCTGGACATAACGATTGGAAGCACCATTGAAGGTAGTGGAGGGAG
GGGGTGTGAAGGAAGGAGGGAAGGGAGGAGTGGAGGGAGGGAGGGATGGG
TGGAGGGAGGGAGGATGACTTCTTGGACTTCTGCCAGCGATCCAGCTTTG
TTGCGTGTGTCCCCCTCCCGCAATGCTAATCGTCCCCTCCCTCGTTCTCT
CCCTCGTTCCCTCCCTCGTTCCCTCCCTCGTTCCCTCCCTCGTCCCCCCC
CTCGTTTCCTTCCTCCCTACAAACAGAGGCCCTGGAGCTGTTTGTGCCCC
CTGTACCGGGCATTCCGGCGGGGCACTGGTGGTGGTGGGGTAGCATCCAA
ATTGTCAATTATCATCACTGTTGAGATGGGGAAGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGTGTCAGCGCACAGCATGTGCTGGCTATAGGCCAAG
CAGTCAAGAAATACACGTTTAAATATTGTAAAAGAGAAAAATGTATATTA
CACTCGTACGGGAGACAGACAAAAACATGTGATGAGGCGTAAGAGAGGAA
GAAATGAAGGGAGGGAAGGAGCTAGGAAAGAGGGAAGGAGGGAAGGGTAA
ATAAGGTGTTGTATGGTATGGGTCGTTTTGATAGCTGATGGAGTATGATA
CAGGAAAGGAAAAGTGAGTCTCCAGACGTCCAGGATGAGCTCCGCATCAC
GAGTTTTGTTCTTTTATTTCACATATCGTGCTTTTTCTTGTTGCTTATGG
TGCACGCCGAAGCCGGCCGATGCTGCACTATGCGGGCGGGGTGTTCTGGC
CTTATGCGTTAAATTTGTTTGGAGGCTTTTGCGGCTCTGACACATGTATC
CCCGGCGTCGATCGCAACATATTTTCATGGTTTGGAAAGAAAATTGTTTT
GATGTCCCTTACAGTCGGAATGGGCCTTCGCTTCGCTTCTCTCTCGCTCC
TCCGTCCTCCTTCGTCCTTGTCTCGGATTCATCCCGGTTCTCTCTCTCTT
TCTGCATGCCTCACTGAACAACCCCCGCAACCACCTTCATCATTATGGTG
TTTCTCTAGCACGCGGTCGTGGGCAAGTTGCGAGCGGCGCCGGGTGCTTT
TGTTTTCTCCAACAAGGCGTTGTAAACCAGCATCATTATCATCATGCTTC
TCACACAGCACTCCCGCCTACAA
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Coding sequence (CDS) from alignment at chr21:619852..623274+

>NO21G02100.2 ID=NO21G02100.2|Name=NO21G02100.2|organism=Nannochloropsis oceanica|type=CDS|length=1527bp|location=Sequence derived from alignment at chr21:619852..623274+ (Nannochloropsis oceanica)
ATGGAAGAAGAAAATTTCGGCCACAAAGGCCACCGACAAGCCTGCCGGGG
GGGCAGTGATGGTGACGGTGTCGGCTTATTTCGCTCCCGTTTGTCAGAAG
CGCTCACTTCCCTACCACACCACCACTTTCCTAATCACAGGCACGCAACC
ATGGTAGTCGTGGATTCTGCATCTGCGGTGCATTCTCTGGCCCCCAAGAA
GCTGCCGCTGGGGCCGACAGGCTGGAATCACTTGTCTGTGGAAATGATGC
ATCAGATCGCTCGTTTTTGCCAGTTACAAGACGTGGCACGGTTTCATTTG
CTGTGCCGGGCCTGGTGCGAGGGCTTGGAGCAATCGGCATTTTTTTATCC
CGAGATCTGCCAAACGCACTGGGCATCCCCCTTATGCGACCTCTCCCTTG
CTGCTTACAGAGGCTCCTGGCGGATGCTCTTCCTTTCCTCGGTAGCCGCC
ACTGCGCCCATCTCCGAATTGCTGGATCAGGGCATCACGGCCTTGACTTC
GTTGAAAGAGAGGGAGGAGGGAGTGGAGGAGGGCAGGGAGGAGGAAGGGG
AAGAGGTGGAGGGCGAGGTCAAGGTGCTCTCGCAGACCAAATCGGTTCGG
GGGCTTTTTGAGGCATTCATGAAGGCCACGTTTGACCTGGGGAGGAAATT
GGAGCTCGGGAAAGTCTCCCCGCACAGCCGAGCCTTCCAAGCCTACCTCG
AAGCCACGGGGAGGATTCTACGGACGTCGGCCTTGATGCGCGCGTGCCTC
TTCGACTTCATCCGTCACACCGAAGAGCTGAGCATGCATTACGACGTCTG
GAACGGCGGCTTCGTCGAGTGGCCTTCTGTGCCTTGGCGTCGAAGTGCCA
TTGATTTTGTCTCTGATTTCTACGTCGCCAAGTCCGTCCTTTCCCCCTCC
CGCTCCCTCCCGCCCTCCCTCCCTCCCTCTACCACCTCTTCTTCTACGCG
CGACAAACAACAACAACAACAACAACAACAACAACAACAAGAAGGAGAAG
GAGGGGAAGGAAAGGAAAAAGAAGAACAACAGCAGCAGGAGGAGGAGCGA
CAGTCGGCTCGGCTGTTCGCTCCGGGTCTGGTAAAGGCGCTGGACATAAC
GATTGGAAGCACCATTGAAGGTAGTGGAGGGAGGGGGTGTGAAGGAAGGA
GGGAAGGGAGGAGTGGAGGGAGGGAGGGATGGGTGGAGGGAGGGAGGATG
ACTTCTTGGACTTCTGCCAGCGATCCAGCTTTGTTGCGTGTGTCCCCCTC
CCGCAATGCTAATCGTCCCCTCCCTCGTTCTCTCCCTCGTTCCCTCCCTC
GTTCCCTCCCTCGTTCCCTCCCTCGTCCCCCCCCTCGTTTCCTTCCTCCC
TACAAACAGAGGCCCTGGAGCTGTTTGTGCCCCCTGTACCGGGCATTCCG
GCGGGGCACTGGTGGTGGTGGGGTAGCATCCAAATTGTCAATTATCATCA
CTGTTGAGATGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTG
TCAGCGCACAGCATGTGCTGGCTATAG
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Synonyms
Publications