NO21G01990, NO21G01990 (gene) Nannochloropsis oceanica

Overview
NameNO21G01990
Unique NameNO21G01990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2079
Alignment locationchr21:579855..581933 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:579855..581933 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO21G01990 vs. NCBI_GenBank
Match: XP_005854338.1 (hypothetical protein NGA_0186400, partial [Nannochloropsis gaditana CCMP526] >EKU22022.1 hypothetical protein NGA_0186400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 340.5 bits (872), Expect = 7.400e-90
Identity = 173/228 (75.88%), Postives = 191/228 (83.77%), Query Frame = 0
Query:   25 VVVGRDRVNIGGVRTCSTSSHGTLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNWDPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEIEQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDSHPEG 253
            +V  R+ VN+GGVRTC+TSSHGTLELRAYPL                  A+ VWDTRGFTPSTYT EELA IL G YPER WDPVGRDAGREAEV   G  TR LREQQACVVVLPEG+LQS+VE++QLRRQL LVQRAG+NPLVLLTHVDLAYPSLR DPSG+GVG+L EA+REAARQLGVE NRVLHMVPYKDEETRRF+IDRL+YKVL+KALQLAAE+V+SHPEG
Sbjct:  347 LVSEREHVNLGGVRTCATSSHGTLELRAYPLHP-------------TVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEG 561          
BLAST of NO21G01990 vs. NCBI_GenBank
Match: EWM22693.1 (hypothetical protein Naga_100340g8 [Nannochloropsis gaditana])

HSP 1 Score: 340.5 bits (872), Expect = 7.400e-90
Identity = 173/228 (75.88%), Postives = 191/228 (83.77%), Query Frame = 0
Query:   25 VVVGRDRVNIGGVRTCSTSSHGTLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNWDPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEIEQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDSHPEG 253
            +V  R+ VN+GGVRTC+TSSHGTLELRAYPL                  A+ VWDTRGFTPSTYT EELA IL G YPER WDPVGRDAGREAEV   G  TR LREQQACVVVLPEG+LQS+VE++QLRRQL LVQRAG+NPLVLLTHVDLAYPSLR DPSG+GVG+L EA+REAARQLGVE NRVLHMVPYKDEETRRF+IDRL+YKVL+KALQLAAE+V+SHPEG
Sbjct:  305 LVSEREHVNLGGVRTCATSSHGTLELRAYPLHP-------------TVSAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEG 519          
BLAST of NO21G01990 vs. NCBI_GenBank
Match: XP_004356453.1 (hypothetical protein ACA1_171260 [Acanthamoeba castellanii str. Neff] >ELR24553.1 hypothetical protein ACA1_171260 [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 85.1 bits (209), Expect = 5.600e-13
Identity = 68/220 (30.91%), Postives = 104/220 (47.27%), Query Frame = 0
Query:   28 GRDRVNIGGVRTCSTSSHGTLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNWDPVGRDA--GREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEIEQLRRQLVLVQ-RAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAE 245
            G   V   GV  C  + H T +L  Y +              G   AL+  DT G T +TY  ++L  ++ G +P RNW   G D    + A+  R    TR  R     + ++    L  + E E ++     +Q +A  NPLVL++ VD   P+ R +P G    +++  K++    LG+  NRV  +V YKDE  R F IDR  Y+++  AL+ A+E
Sbjct:  145 GMSVVETAGVGGC--ARHNTRQLATYTID-------------GENFALV--DTWGLTLTTYLNDDLENVVDGVFP-RNW---GMDMIYDQHAKAIRDNASTRPERAVHVILFMITHSALDKNDECELIKANYARLQDKAARNPLVLISKVDEIVPAFRSNPLG-DYPEVRALKQKVTDLLGIPENRVYAVVNYKDESERSFQIDRNTYRIVEHALRTASE 342          
BLAST of NO21G01990 vs. NCBI_GenBank
Match: XP_005777694.1 (hypothetical protein EMIHUDRAFT_237890 [Emiliania huxleyi CCMP1516] >EOD25265.1 hypothetical protein EMIHUDRAFT_237890 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 74.3 bits (181), Expect = 9.900e-10
Identity = 68/244 (27.87%), Postives = 101/244 (41.39%), Query Frame = 0
Query:   18 KLWFLERVVVGRDRVNIGGVRTCSTSSHG-----TLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNW------DPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSS--VEIEQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDS 249
            K  F   ++      N G    C+   HG     T+ LRA                   E  L VWDT+G TP  Y   EL  I++G  P   W      DP      ++  VE      R  R   A V +LP   L  +    ++++R Q   + R G+NP+VL+  +D A  ++R++PS         A + AA  LG+    V   + Y D  ++ F IDR +  VL + L +A    +S
Sbjct:  140 KTSFTNSILALMSHANSGEALPCAEPVHGGGDHCTVTLRAIDFP--------------NELPLRVWDTKGLTPENYKGPELEAIMKGKLP-HGWDMDCHIDPAMLSESQDLTVE----AKRFGRTPHAVVFMLPFSELDDTDGEFMQKIRDQFGKIVRLGINPIVLVAKLDEADDAVRKNPSSSN-STKDAALKAAADFLGIPFGNVYPCINYLDLTSKSFEIDRNLAVVLHRILSMAKHRCES 363          
BLAST of NO21G01990 vs. NCBI_GenBank
Match: XP_005766143.1 (hypothetical protein EMIHUDRAFT_246646 [Emiliania huxleyi CCMP1516] >EOD13714.1 hypothetical protein EMIHUDRAFT_246646 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.1 bits (157), Expect = 6.000e-7
Identity = 60/217 (27.65%), Postives = 92/217 (42.40%), Query Frame = 0
Query:   42 TSSHGTLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNWD--------PVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSS--VEIEQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDS 249
            +  H T+ LR      LP               L +WDT+G T   Y   EL  I++GS P   WD         +      + EV R G      R   A V +LP G L  +    ++++  Q   + R G+NP+VL+  +D A   +R DP     G      + AA  LG+ +  V   + Y D  ++ F IDR +  +L + L +A +  +S
Sbjct:  168 SDDHCTVSLRCIDADGLP---------------LRMWDTKGLTTENYKGPELEAIMKGSLP-HGWDMDRHIDQTMLSESPDSKVEVIRFG------RTPHAVVFMLPYGELDDTDGEFMQKILDQFSKIVRLGINPIVLVAKLDDADKKVRADPCASN-GTKGAKLKAAAEFLGIPVGNVYPCINYLD-LSKSFEIDRNLAIILHRILSMAKQRCES 360          
The following BLAST results are available for this feature:
BLAST of NO21G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005854338.17.400e-9075.88hypothetical protein NGA_0186400, partial [Nannoch... [more]
EWM22693.17.400e-9075.88hypothetical protein Naga_100340g8 [Nannochloropsi... [more]
XP_004356453.15.600e-1330.91hypothetical protein ACA1_171260 [Acanthamoeba cas... [more]
XP_005777694.19.900e-1027.87hypothetical protein EMIHUDRAFT_237890 [Emiliania ... [more]
XP_005766143.16.000e-727.65hypothetical protein EMIHUDRAFT_246646 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01990.1NO21G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673455gene_8166Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100340g8gene7742Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01990.1NO21G01990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01990 ID=NO21G01990|Name=NO21G01990|organism=Nannochloropsis oceanica|type=gene|length=2079bp
ATGTCAACCGTGGACTTGAACGAAACCCTCACTATGACAGCCGAGGAGAA
CAAGCTCTGGTTCCTGGAGCGGGTCGTTGTCGGGCGgttagtcaaggggg
aatgcaaggtcattcctctccgtttacgtgtccgaggcaccctctcagtg
ccctacgaagacgccatccccgaccgttacaccctaacgttaagccacgc
ctcacctcttcgctttctccctccttccacctccacctcctccttgactt
cctcatcctctctttcctcctacactacttctcctcctccccccctcatc
atccgctacacgtttccccactctttccgcttcttcctcaaaggtctccc
cggccttgcccctcgtcgtgtggtaacccttcccccccttccctcccccc
ttccctccctaccccccccctcatcgtctactggctcccaccaaccttgt
gctgattggcccggcaggtgcaggcaagagcaccctgctctcccacctcc
tcacccttgtgtctgacagAGACCGAGTCAACATAGGAGGGGTACGGACG
TGTTCCACCTCGTCGCACGGGACTCTTGAATTAAGAGCCTACCCGCTGCA
ACAACTGCCACTCGACGATAACGAGGGAGGGGCGGAGGGAGGGAGGGAGT
GCGCGCTGTTGGTGTGGGACACGAGGGGGTTCACGCCCAGCACGTACACA
AGGGAGGAGTTGGCCCGGATCCTGAGGGGATCTTACCCGGAAAGAAATTG
GGATCCAGTCGGGAGGGATGCAGGGAGAGAGGCAGAAGTGGAGCGGGCGG
GGAGGAGGACGCGGAGGCTGAGGGAGCAACAGGCTTGCGTAGTGGTGCTG
CCGGAGGGACTGCTGCAGAGCTCGGTGGAAATCGAGCAGTTGAGGCGACA
GCTGGTGCTGGTGCAGAGGGCGGGGATGAATCCGTTGGTGCTACTGACGC
ACGTGGACCTTGCGTATCCGTCATTGCGGCAAGACCCGTCGGGAAAGGGG
GTGGGGGACTTGCAGGAGGCGAAGAGGGAGGCCGCGCGGCAGCTGGGCGT
GGAGCTGAACCGCGTGCTGCATATGGTGCCATATAAGGACGAGGAGACCA
Ggtgcgtcttcccggggtgtgggtgtgtctccttccctccttccttccct
ccctccctctcaccgtatgtctgtcatgtttttcctgagtgggtggatgt
ttgtgcttgttcctccctctcttcccttcctttcttcgtcctgcaggcgc
ttagctattggccgtctctcctgcacaaaaagctattcaaactcctaaaa
cgcacagatagtgctgctgctgccactgtcattgtttttgttactggaca
atacacatctattaattaaatcgccttctcgctcgctttctcctccccac
tccattctccactctctttcctcctcactccccccagGCGTTTTGCAATC
GATCGCCTTATCTACAAGGTGCTGTCTAAGGCTCTTCAGCTCGCGGCTGA
ATTCGTTGACTCTCACCCAGAGGGTGGCGAGAGCGGGAGGGAGGACGAGG
TGGAGGAAGGGGGAGAGGGACAGGGAGGGCCTTCGCCACCGTCGTTTGTG
TTACCGAGCACTGTGACGTTGCAGCAGCAGCAGCAACAGCAACAACAACA
GCGGCGGCAGCAGCAGCAGCAGCAGCAGCAATGGCAGCAACAGCAGCAGC
AGCAGGTGTACGTGCCTCACGCCCCCAATTCTACTGCTTCTACAACTACA
GTAGAAGGAACGGGAGGGAGAAATAGCGGGCGACGACGGCGACTGGTCAG
GGTGGAGGGAGGGAGGGAGGACGAGGAAGAGGAGGTAGAGACAGTAATGA
TGGGAGCTTTAGAAGTTCAGGATGAGGAGAAGGAGGAGGAGGAAGGGCAA
GAGGAAAGCGAGAGAGAAGGGGAGAGAGAAAGGCAGGAAGAATTAGATGA
TGGAGTGTCGTCATTGCATGGCTCACTGACGTTTAGCGACGAGGGAACGG
TGCCAGAGCCCTATATGAGAGGGAACTCGACTTGACGAGGTGCACAAGAG
GGAAATAAATAATGTAGATCAAACGAAAA
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protein sequence of NO21G01990.1

>NO21G01990.1-protein ID=NO21G01990.1-protein|Name=NO21G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MSTVDLNETLTMTAEENKLWFLERVVVGRDRVNIGGVRTCSTSSHGTLEL
RAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGS
YPERNWDPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEI
EQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREA
ARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDSHP
EGGESGREDEVEEGGEGQGGPSPPSFVLPSTVTLQQQQQQQQQQRRQQQQ
QQQQWQQQQQQQVYVPHAPNSTASTTTVEGTGGRNSGRRRRLVRVEGGRE
DEEEEVETVMMGALEVQDEEKEEEEGQEESEREGERERQEELDDGVSSLH
GSLTFSDEGTVPEPYMRGNST*
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Synonyms
Publications