NO21G01990.1, NO21G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO21G01990.1
Unique NameNO21G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1310
Alignment locationchr21:579855..581933 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:579855..581933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO21G01990.1 vs.
Match: EWM22693.1 (hypothetical protein Naga_100340g8 [Nannochloropsis gaditana])

HSP 1 Score: 340.5 bits (872), Expect = 7.400e-90
Identity = 173/228 (75.88%), Postives = 191/228 (83.77%), Query Frame = 0 
Query:   25 VVVGRDRVNIGGVRTCSTSSHGTLELRAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGSYPERNWDPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEIEQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREAARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDSHPEG 253
            +V  R+ VN+GGVRTC+TSSHGTLELRAYPL                  A+ VWDTRGFTPSTYT EELA IL G YPER WDPVGRDAGREAEV   G  TR LREQQACVVVLPEG+LQS+VE++QLRRQL LVQRAG+NPLVLLTHVDLAYPSLR DPSG+GVG+L EA+REAARQLGVE NRVLHMVPYKDEETRRF+IDRL+YKVL+KALQLAAE+V+SHPEG
Sbjct:  305 LVSEREHVNLGGVRTCATSSHGTLELRAYPLHPTV-------------SAVSVWDTRGFTPSTYTCEELANILAGDYPERRWDPVGRDAGREAEVREEGGATRALREQQACVVVLPEGILQSAVELDQLRRQLELVQRAGLNPLVLLTHVDLAYPSLRADPSGRGVGELGEARREAARQLGVEANRVLHMVPYKDEETRRFSIDRLVYKVLAKALQLAAEYVESHPEG 519
The following BLAST results are available for this feature:
BLAST of NO21G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22693.17.400e-9075.88hypothetical protein Naga_100340g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G01990NO21G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO21G01990.1NO21G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO21G01990.1.cds1NO21G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01990.1.cds2NO21G01990.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO21G01990.1.cds3NO21G01990.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO21G01990.1 ID=NO21G01990.1|Name=NO21G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
ATGTCAACCGTGGACTTGAACGAAACCCTCACTATGACAGCCGAGGAGAA
CAAGCTCTGGTTCCTGGAGCGGGTCGTTGTCGGGCGAGACCGAGTCAACA
TAGGAGGGGTACGGACGTGTTCCACCTCGTCGCACGGGACTCTTGAATTA
AGAGCCTACCCGCTGCAACAACTGCCACTCGACGATAACGAGGGAGGGGC
GGAGGGAGGGAGGGAGTGCGCGCTGTTGGTGTGGGACACGAGGGGGTTCA
CGCCCAGCACGTACACAAGGGAGGAGTTGGCCCGGATCCTGAGGGGATCT
TACCCGGAAAGAAATTGGGATCCAGTCGGGAGGGATGCAGGGAGAGAGGC
AGAAGTGGAGCGGGCGGGGAGGAGGACGCGGAGGCTGAGGGAGCAACAGG
CTTGCGTAGTGGTGCTGCCGGAGGGACTGCTGCAGAGCTCGGTGGAAATC
GAGCAGTTGAGGCGACAGCTGGTGCTGGTGCAGAGGGCGGGGATGAATCC
GTTGGTGCTACTGACGCACGTGGACCTTGCGTATCCGTCATTGCGGCAAG
ACCCGTCGGGAAAGGGGGTGGGGGACTTGCAGGAGGCGAAGAGGGAGGCC
GCGCGGCAGCTGGGCGTGGAGCTGAACCGCGTGCTGCATATGGTGCCATA
TAAGGACGAGGAGACCAGGCGTTTTGCAATCGATCGCCTTATCTACAAGG
TGCTGTCTAAGGCTCTTCAGCTCGCGGCTGAATTCGTTGACTCTCACCCA
GAGGGTGGCGAGAGCGGGAGGGAGGACGAGGTGGAGGAAGGGGGAGAGGG
ACAGGGAGGGCCTTCGCCACCGTCGTTTGTGTTACCGAGCACTGTGACGT
TGCAGCAGCAGCAGCAACAGCAACAACAACAGCGGCGGCAGCAGCAGCAG
CAGCAGCAGCAATGGCAGCAACAGCAGCAGCAGCAGGTGTACGTGCCTCA
CGCCCCCAATTCTACTGCTTCTACAACTACAGTAGAAGGAACGGGAGGGA
GAAATAGCGGGCGACGACGGCGACTGGTCAGGGTGGAGGGAGGGAGGGAG
GACGAGGAAGAGGAGGTAGAGACAGTAATGATGGGAGCTTTAGAAGTTCA
GGATGAGGAGAAGGAGGAGGAGGAAGGGCAAGAGGAAAGCGAGAGAGAAG
GGGAGAGAGAAAGGCAGGAAGAATTAGATGATGGAGTGTCGTCATTGCAT
GGCTCACTGACGTTTAGCGACGAGGGAACGGTGCCAGAGCCCTATATGAG
AGGGAACTCGACTTGACGAGGTGCACAAGAGGGAAATAAATAATGTAGAT
CAAACGAAAA
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protein sequence of NO21G01990.1

>NO21G01990.1-protein ID=NO21G01990.1-protein|Name=NO21G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MSTVDLNETLTMTAEENKLWFLERVVVGRDRVNIGGVRTCSTSSHGTLEL
RAYPLQQLPLDDNEGGAEGGRECALLVWDTRGFTPSTYTREELARILRGS
YPERNWDPVGRDAGREAEVERAGRRTRRLREQQACVVVLPEGLLQSSVEI
EQLRRQLVLVQRAGMNPLVLLTHVDLAYPSLRQDPSGKGVGDLQEAKREA
ARQLGVELNRVLHMVPYKDEETRRFAIDRLIYKVLSKALQLAAEFVDSHP
EGGESGREDEVEEGGEGQGGPSPPSFVLPSTVTLQQQQQQQQQQRRQQQQ
QQQQWQQQQQQQVYVPHAPNSTASTTTVEGTGGRNSGRRRRLVRVEGGRE
DEEEEVETVMMGALEVQDEEKEEEEGQEESEREGERERQEELDDGVSSLH
GSLTFSDEGTVPEPYMRGNST*
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mRNA from alignment at chr21:579855..581933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO21G01990.1 ID=NO21G01990.1|Name=NO21G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp|location=Sequence derived from alignment at chr21:579855..581933+ (Nannochloropsis oceanica)
ATGTCAACCGTGGACTTGAACGAAACCCTCACTATGACAGCCGAGGAGAA
CAAGCTCTGGTTCCTGGAGCGGGTCGTTGTCGGGCGGTTAGTCAAGGGGG
AATGCAAGGTCATTCCTCTCCGTTTACGTGTCCGAGGCACCCTCTCAGTG
CCCTACGAAGACGCCATCCCCGACCGTTACACCCTAACGTTAAGCCACGC
CTCACCTCTTCGCTTTCTCCCTCCTTCCACCTCCACCTCCTCCTTGACTT
CCTCATCCTCTCTTTCCTCCTACACTACTTCTCCTCCTCCCCCCCTCATC
ATCCGCTACACGTTTCCCCACTCTTTCCGCTTCTTCCTCAAAGGTCTCCC
CGGCCTTGCCCCTCGTCGTGTGGTAACCCTTCCCCCCCTTCCCTCCCCCC
TTCCCTCCCTACCCCCCCCCTCATCGTCTACTGGCTCCCACCAACCTTGT
GCTGATTGGCCCGGCAGGTGCAGGCAAGAGCACCCTGCTCTCCCACCTCC
TCACCCTTGTGTCTGACAGAGACCGAGTCAACATAGGAGGGGTACGGACG
TGTTCCACCTCGTCGCACGGGACTCTTGAATTAAGAGCCTACCCGCTGCA
ACAACTGCCACTCGACGATAACGAGGGAGGGGCGGAGGGAGGGAGGGAGT
GCGCGCTGTTGGTGTGGGACACGAGGGGGTTCACGCCCAGCACGTACACA
AGGGAGGAGTTGGCCCGGATCCTGAGGGGATCTTACCCGGAAAGAAATTG
GGATCCAGTCGGGAGGGATGCAGGGAGAGAGGCAGAAGTGGAGCGGGCGG
GGAGGAGGACGCGGAGGCTGAGGGAGCAACAGGCTTGCGTAGTGGTGCTG
CCGGAGGGACTGCTGCAGAGCTCGGTGGAAATCGAGCAGTTGAGGCGACA
GCTGGTGCTGGTGCAGAGGGCGGGGATGAATCCGTTGGTGCTACTGACGC
ACGTGGACCTTGCGTATCCGTCATTGCGGCAAGACCCGTCGGGAAAGGGG
GTGGGGGACTTGCAGGAGGCGAAGAGGGAGGCCGCGCGGCAGCTGGGCGT
GGAGCTGAACCGCGTGCTGCATATGGTGCCATATAAGGACGAGGAGACCA
GGTGCGTCTTCCCGGGGTGTGGGTGTGTCTCCTTCCCTCCTTCCTTCCCT
CCCTCCCTCTCACCGTATGTCTGTCATGTTTTTCCTGAGTGGGTGGATGT
TTGTGCTTGTTCCTCCCTCTCTTCCCTTCCTTTCTTCGTCCTGCAGGCGC
TTAGCTATTGGCCGTCTCTCCTGCACAAAAAGCTATTCAAACTCCTAAAA
CGCACAGATAGTGCTGCTGCTGCCACTGTCATTGTTTTTGTTACTGGACA
ATACACATCTATTAATTAAATCGCCTTCTCGCTCGCTTTCTCCTCCCCAC
TCCATTCTCCACTCTCTTTCCTCCTCACTCCCCCCAGGCGTTTTGCAATC
GATCGCCTTATCTACAAGGTGCTGTCTAAGGCTCTTCAGCTCGCGGCTGA
ATTCGTTGACTCTCACCCAGAGGGTGGCGAGAGCGGGAGGGAGGACGAGG
TGGAGGAAGGGGGAGAGGGACAGGGAGGGCCTTCGCCACCGTCGTTTGTG
TTACCGAGCACTGTGACGTTGCAGCAGCAGCAGCAACAGCAACAACAACA
GCGGCGGCAGCAGCAGCAGCAGCAGCAGCAATGGCAGCAACAGCAGCAGC
AGCAGGTGTACGTGCCTCACGCCCCCAATTCTACTGCTTCTACAACTACA
GTAGAAGGAACGGGAGGGAGAAATAGCGGGCGACGACGGCGACTGGTCAG
GGTGGAGGGAGGGAGGGAGGACGAGGAAGAGGAGGTAGAGACAGTAATGA
TGGGAGCTTTAGAAGTTCAGGATGAGGAGAAGGAGGAGGAGGAAGGGCAA
GAGGAAAGCGAGAGAGAAGGGGAGAGAGAAAGGCAGGAAGAATTAGATGA
TGGAGTGTCGTCATTGCATGGCTCACTGACGTTTAGCGACGAGGGAACGG
TGCCAGAGCCCTATATGAGAGGGAACTCGACTTGACGAGGTGCACAAGAG
GGAAATAAATAATGTAGATCAAACGAAAA
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Coding sequence (CDS) from alignment at chr21:579855..581933+

>NO21G01990.1 ID=NO21G01990.1|Name=NO21G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr21:579855..581933+ (Nannochloropsis oceanica)
ATGTCAACCGTGGACTTGAACGAAACCCTCACTATGACAGCCGAGGAGAA
CAAGCTCTGGTTCCTGGAGCGGGTCGTTGTCGGGCGAGACCGAGTCAACA
TAGGAGGGGTACGGACGTGTTCCACCTCGTCGCACGGGACTCTTGAATTA
AGAGCCTACCCGCTGCAACAACTGCCACTCGACGATAACGAGGGAGGGGC
GGAGGGAGGGAGGGAGTGCGCGCTGTTGGTGTGGGACACGAGGGGGTTCA
CGCCCAGCACGTACACAAGGGAGGAGTTGGCCCGGATCCTGAGGGGATCT
TACCCGGAAAGAAATTGGGATCCAGTCGGGAGGGATGCAGGGAGAGAGGC
AGAAGTGGAGCGGGCGGGGAGGAGGACGCGGAGGCTGAGGGAGCAACAGG
CTTGCGTAGTGGTGCTGCCGGAGGGACTGCTGCAGAGCTCGGTGGAAATC
GAGCAGTTGAGGCGACAGCTGGTGCTGGTGCAGAGGGCGGGGATGAATCC
GTTGGTGCTACTGACGCACGTGGACCTTGCGTATCCGTCATTGCGGCAAG
ACCCGTCGGGAAAGGGGGTGGGGGACTTGCAGGAGGCGAAGAGGGAGGCC
GCGCGGCAGCTGGGCGTGGAGCTGAACCGCGTGCTGCATATGGTGCCATA
TAAGGACGAGGAGACCAGGCGTTTTGCAATCGATCGCCTTATCTACAAGG
TGCTGTCTAAGGCTCTTCAGCTCGCGGCTGAATTCGTTGACTCTCACCCA
GAGGGTGGCGAGAGCGGGAGGGAGGACGAGGTGGAGGAAGGGGGAGAGGG
ACAGGGAGGGCCTTCGCCACCGTCGTTTGTGTTACCGAGCACTGTGACGT
TGCAGCAGCAGCAGCAACAGCAACAACAACAGCGGCGGCAGCAGCAGCAG
CAGCAGCAGCAATGGCAGCAACAGCAGCAGCAGCAGGTGTACGTGCCTCA
CGCCCCCAATTCTACTGCTTCTACAACTACAGTAGAAGGAACGGGAGGGA
GAAATAGCGGGCGACGACGGCGACTGGTCAGGGTGGAGGGAGGGAGGGAG
GACGAGGAAGAGGAGGTAGAGACAGTAATGATGGGAGCTTTAGAAGTTCA
GGATGAGGAGAAGGAGGAGGAGGAAGGGCAAGAGGAAAGCGAGAGAGAAG
GGGAGAGAGAAAGGCAGGAAGAATTAGATGATGGAGTGTCGTCATTGCAT
GGCTCACTGACGTTTAGCGACGAGGGAACGGTGCCAGAGCCCTATATGAG
AGGGAACTCGACTTGA
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Synonyms
Publications