NO21G01970, NO21G01970 (gene) Nannochloropsis oceanica

Overview
NameNO21G01970
Unique NameNO21G01970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1090
Alignment locationchr21:577755..578844 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr21genomechr21:577755..578844 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO21G01970 vs. NCBI_GenBank
Match: XP_005854336.1 (hypothetical protein NGA_0186000 [Nannochloropsis gaditana CCMP526] >EKU22020.1 hypothetical protein NGA_0186000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 171.0 bits (432), Expect = 4.400e-39
Identity = 76/174 (43.68%), Postives = 119/174 (68.39%), Query Frame = 0 
Query:   64 ADKEDCNKIAEMFTLRLDKMWEYAHGHVSDTLRNPKVVLGLGWHDESNVPIGEVDVQFRAVSLVKVLVWPRWTVPYVDVKVQSAPAAKAFKSAFNALSTTAVHSTVIRRVQELSDPVTVTEDAGEIGGGRFDKVEKGVRGLLYYTLPLLFMGVPFPLMMLVNSKRKGLWGQEMK 238
            +D E C+ + + FT R DK++++  GHV DTLR P++VL +GWH+E++ P GE+DVQF+A+S+ ++   P WT PY+DV +Q+ PA++ F+SAF +L+TTA  ST +R +Q L + +  T+ AG++  G FD++ +G+  L+ Y  PLLF G P PL++ V  K +G    E K
Sbjct:   16 SDAEVCDVVEDTFTFRFDKLYDFVRGHVVDTLRKPRLVLAVGWHEETSTPTGELDVQFQAISVARISFRPHWTAPYLDVSMQT-PASRVFQSAFASLATTAALSTALRNIQALPESLEYTKGAGDVFNGTFDRIRRGLWDLIDYGKPLLFAGAPLPLVLFVTRKDQGSCSNERK 188
[Close]
BLAST of NO21G01970 vs. NCBI_GenBank
Match: EWM22697.1 (hypothetical protein Naga_100340g7 [Nannochloropsis gaditana])

HSP 1 Score: 171.0 bits (432), Expect = 4.400e-39
Identity = 76/174 (43.68%), Postives = 119/174 (68.39%), Query Frame = 0 
Query:   64 ADKEDCNKIAEMFTLRLDKMWEYAHGHVSDTLRNPKVVLGLGWHDESNVPIGEVDVQFRAVSLVKVLVWPRWTVPYVDVKVQSAPAAKAFKSAFNALSTTAVHSTVIRRVQELSDPVTVTEDAGEIGGGRFDKVEKGVRGLLYYTLPLLFMGVPFPLMMLVNSKRKGLWGQEMK 238
            +D E C+ + + FT R DK++++  GHV DTLR P++VL +GWH+E++ P GE+DVQF+A+S+ ++   P WT PY+DV +Q+ PA++ F+SAF +L+TTA  ST +R +Q L + +  T+ AG++  G FD++ +G+  L+ Y  PLLF G P PL++ V  K +G    E K
Sbjct:   64 SDAEVCDVVEDTFTFRFDKLYDFVRGHVVDTLRKPRLVLAVGWHEETSTPTGELDVQFQAISVARISFRPHWTAPYLDVSMQT-PASRVFQSAFASLATTAALSTALRNIQALPESLEYTKGAGDVFNGTFDRIRRGLWDLIDYGKPLLFAGAPLPLVLFVTRKDQGSCSNERK 236
The following BLAST results are available for this feature:
BLAST of NO21G01970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854336.14.400e-3943.68hypothetical protein NGA_0186000 [Nannochloropsis ... [more]
EWM22697.14.400e-3943.68hypothetical protein Naga_100340g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR040ncniR040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR062ngnoR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO21G01970.1NO21G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100340g7gene7743Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO21G01970.1NO21G01970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO21G01970 ID=NO21G01970|Name=NO21G01970|organism=Nannochloropsis oceanica|type=gene|length=1090bp
ACAGGACATCGCTTGCCGCACCTTTTCCCACCCTATTCCGCGCCATGACA
TTGTCTGACTTTTTCTCCTACTCATCCTCTGTGCCTGCCGGCACCATCAG
CACTTCTACAAAAGCGACCGAGACTCAGGAACCCTCGCCCTGCGACGCCG
ACATAACGACGGCCACCTTCCTTATCGAGCCGCACCACCACCAAGAGCAG
GAGCGAGGGTACGAGGTTGACAAGTACGATGGAGCAGATAAAGAGGACTG
CAATAAAATTGCGGAGATGTTCACCCTTCGACTGGATAAGATGTGGGAGT
ACGCGCATGGGCATGTAAGCGACACATTGCGGAACCCAAAGGTGGTCTTG
GGGCTGGGGTGGCACGATGAGTCGAATGTGCCAATTGGCGAGGTAGACGT
GCAGTTCAGGGCCGTGTCTCTTGTCAAGGTGTTAGTCTGgtaagtattat
atgattatgcttattgaatgtgggagatgagtttgcagggacgtgtcaaa
ggaaaaagggttttggtgcgcaggtgtgtatgtgaggggaacgagcgcga
ggaagacaaggacgtttaataactcatcattctacgacattaaactcgca
cacacaattcacagGCCACGCTGGACCGTCCCTTATGTGGACGTCAAGGT
GCAAAGTGCTCCGGCTGCCAAAGCCTTCAAGAGCGCCTTCAATGCCCTTA
GTACCACTGCCGTGCATTCCACCGTCATCCGACGCGTACAAGAGCTGTCG
GATCCCGTGACAGTGACGGAGGACGCGGGCGAAATTGGAGGGGGGAGATT
TGATAAGGTGGAAAAAGGTGTGAGGGGATTATTGTATTACACCTTACCAC
TGTTATTCATGGGGGTCCCCTTCCCACTGATGATGCTGGTGAACAGCAAG
CGGAAGGGACTGTGGGGACAAGAGATGAAGTGAGGAAGGTGACTTGTGAC
TGGGTACGTGTATCAATAGAAAAGAAGCAAAACACAATGAGTAATATCTC
ATGAGGGGAAGGCATGACGGGTGATGACTGAATTGATGTACCAGCGATAG
CAAAGAAGTAAAAACAAGGAATATGAAGGAATGAAAAGAG
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protein sequence of NO21G01970.1

>NO21G01970.1-protein ID=NO21G01970.1-protein|Name=NO21G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MTLSDFFSYSSSVPAGTISTSTKATETQEPSPCDADITTATFLIEPHHHQ
EQERGYEVDKYDGADKEDCNKIAEMFTLRLDKMWEYAHGHVSDTLRNPKV
VLGLGWHDESNVPIGEVDVQFRAVSLVKVLVWPRWTVPYVDVKVQSAPAA
KAFKSAFNALSTTAVHSTVIRRVQELSDPVTVTEDAGEIGGGRFDKVEKG
VRGLLYYTLPLLFMGVPFPLMMLVNSKRKGLWGQEMK*
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Synonyms
Publications